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Research Article

A Genetic Atlas of Human Admixture History

Science
14 Feb 2014
Vol 343, Issue 6172
pp. 747-751

The in-Laws Through History

Admixture, the result of previously distant populations meeting and breeding, leaves a genetic signal within the descendants' genomes. However, over time the signal decays and can be hard to trace. Hellenthal et al. (p. 747) describe a method, using a technique called chromosome painting, to follow the genetic traces of admixture back to the nearest extant population. The approach revealed details of worldwide human admixture history over the past 4000 years.

Abstract

Modern genetic data combined with appropriate statistical methods have the potential to contribute substantially to our understanding of human history. We have developed an approach that exploits the genomic structure of admixed populations to date and characterize historical mixture events at fine scales. We used this to produce an atlas of worldwide human admixture history, constructed by using genetic data alone and encompassing over 100 events occurring over the past 4000 years. We identified events whose dates and participants suggest they describe genetic impacts of the Mongol empire, Arab slave trade, Bantu expansion, first millennium CE migrations in Eastern Europe, and European colonialism, as well as unrecorded events, revealing admixture to be an almost universal force shaping human populations.

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Supplementary Material

Summary

Materials and Methods
Supplementary Text
Figs. S1 to S21
Tables S1 to S16
Appendix
References (4182)

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Published In

Science
Volume 343 | Issue 6172
14 February 2014

Submission history

Received: 22 July 2013
Accepted: 20 December 2013
Published in print: 14 February 2014

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Acknowledgments

We are grateful for the John Fell Fund–University of Oxford, the NIH, the Wellcome Trust (S.M., grant 098387/Z/12/Z), the Biotechnology and Biological Sciences Research Council, the Royal Society/Wellcome Trust (G.H., grant 098386/Z/12/Z), and the Istituto Italiano di Antropologia for funding. J.F.W. is a director, stockholder, and employee of ScotlandsDNA (and formerly of EthnoAncestry). We thank S. Karachanak, D. Toncheva, P. Anagnostou, F. Cali, F. Brisighelli, V. Romano, G. LeFranc, C. Buresi, J. Ben Chibani, A. Haj-Khelil, S. Denden, R. Ploski, T. Hervig, T. Moen, P. Krajewski, and R. Herrera for providing samples for our genotyping and the blood donors and the staff of the Unità Operativa Complessa di Medicina Trasfusionale, Azienda Ospedaliera Umberto I, Siracusa (Italy). Data analyzed in this study may be downloaded via http://admixturemap.paintmychromosomes.com/. Raw genotype data are available at the Gene Expression Omnibus database online (www.ncbi.nlm.nih.gov/geo/), series accession number GSE53626.

Authors

Affiliations

Garrett Hellenthal
UCL Genetics Institute, University College London, Gower Street, London WC1E 6BT, UK.
George B. J. Busby
Department of Zoology, Oxford University, South Parks Road, Oxford OX1 3PS, UK.
Gavin Band
Wellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
James F. Wilson
Centre for Population Health Sciences, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, UK.
Cristian Capelli
Department of Zoology, Oxford University, South Parks Road, Oxford OX1 3PS, UK.
Daniel Falush*
Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany.
Simon Myers*, [email protected]
Wellcome Trust Centre for Human Genetics, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK.
Department of Statistics, Oxford University, 1 South Parks Road, Oxford OX1 3TG, UK.

Notes

*
These authors contributed equally to this work.
Corresponding author. E-mail: [email protected]

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