Functional and structural insights into activation of TRPV2 by weak acids
Abstract
Synopsis
Introduction
Results
Discussion
Methods
Reagent/resource
|
Reference or source
|
Identifier or catalog number
|
---|---|---|
Experimental models
|
||
Human Embryonic Kidney 293 (HEK293) cells
|
ATCC
|
Cat# CRL-1573
|
HEK293T cells
|
ATCC
|
Cat# CRL-3216
|
Saccharomyces cerevisiae BJ5457
|
ATCC
|
Cat# 208282
|
ND7/23 cells
|
The European Collection of Authenticated Cell Cultures (ECACC)
|
Cat# 92090903
|
Recombinant DNA
|
||
Purified rat TRPV2
|
Huynh et al, 2016https://doi.org/10.1038/ncomms11130
|
N/A
|
rat TRPV2-pCDNA3.1 plasmid
|
Caterina et al, 1999https://doi.org/10.1038/18906
|
N/A
|
mouse TRPV2-pCDNA3.1 plasmid
|
Kanzaki et al, 1999https://doi.org/10.1038/11086
|
N/A
|
human TRPV2-pCDNA3.1
|
This study and Fricke et al, 2019
|
N/A
|
Antibodies
|
||
1D4 primary antibody
|
Hodges et al, 1988
|
N/A
|
Oligonucleotides and sequence-based reagents
|
||
rTRPV2 E569A
|
Eurogentec
|
N/A
|
5'-CTGTGGAGTTGTTATCTGCAGGGGCTTTGGGACTT-3'
|
||
5'-AAGTCCCAAAGCCCCTGCAGATAACAACTCCACAG-3'
|
||
rTRPV2-D570A
|
||
5'-CACTGTGGAGTTGTTAGCTTCAGGGGCTTTGGG-3'
|
||
5'-CCCAAAGCCCCTGAAGCTAACAACTCCACAGTG-3'
|
||
rTRPV2 E577A
|
||
5'-CACCGTGGGCTGTGCCGTCACTGTGGA-3'
|
||
5'-TCCACAGTGACGGCACAGCCCACGGTG-3'
|
||
rTRPV2 E561A
|
||
5'-GGGACTTCGGGCCGCTCTGCTCAAGCT-3'
|
||
5'-AGCTTGAGCAGAGCGGCCCGAAGTCCC-3'
|
||
rTRPV2 K566A
|
||
5'-GTTATCTTCAGGGGCTGCGGGACTTCGGGCCTCT-3'
|
||
5'-AGAGGCCCGAAGTCCCGCAGCCCCTGAAGATAAC-3'
|
||
rTRPV2 E586A
|
||
5'-ATATGGAGCTGGCGCCTCCTCCTGGCC-3'
|
||
5'-GGCCAGGAGGAGGCGCCAGCTCCATAT-3'
|
||
rTRPV2-E561Q
|
||
5'-CTTCGGGCCTGTCTGCTCAAGCTTACTAGG-3'
|
||
5'-CCTAGTAAGCTTGAGCAGACAGGCCCGAAG-3'
|
||
rTRPV2 K566Q
|
||
5'-GTTATCTTCAGGGGCCTGGGGACTTCGGGCCTC-3'
|
||
5'-GAGGCCCGAAGTCCCCAGGCCCCTGAAGATAAC-3'
|
||
rTRPV2 E569Q
|
||
5'-CACTGTGGAGTTGTTATCCTGAGGGGCTTTGGGACTTCG-3'
|
||
5'-CGAAGTCCCAAAGCCCCTCAGGATAACAACTCCACAGTG-3'
|
||
rTRPV2-D570N
|
||
5'-CACTGTGGAGTTGTTATTTTCAGGGGCTTTGGGAC-3'
|
||
5'-GTCCCAAAGCCCCTGAAAATAACAACTCCACAGTG-3'
|
||
rTRPV2 E577Q
|
||
5'-CCACCGTGGGCTGCTGCGTCACTGTGGAG-3'
|
||
5'-CTCCACAGTGACGCAGCAGCCCACGGTGG-3'
|
||
rTRPV2 E586Q
|
||
5'-ATGGAGCTGGCTGCTCCTCCTGGCC-3'
|
||
5'-GGCCAGGAGGAGCAGCCAGCTCCAT-3'
|
||
rTRPV2-H521N
|
||
5'-CTGTAGATGCCTGTGTTCTGAAAGCCCCGTGTG-3'
|
||
5'-CACACGGGGCTTTCAGAACACAGGCATCTACAG-3'
|
||
rTRPV2 R535K
|
||
5'-ACGGAGCAGGTCTTTAAGGATGACCTTCTGGATCATGAC-3'
|
||
5'-GTCATGATCCAGAAGGTCATCCTTAAAGACCTGCTCCGT-3'
|
||
rTRPV2 R539K
|
||
5'-CCAGGTAGACCAGCAGGAACTTGAGCAGGTCTCGAAGGATG-3'
|
||
5'-CATCCTTCGAGACCTGCTCAAGTTCCTGCTGGTCTACCTGG-3'
|
||
rTRPV2-E495Q
|
||
5'-GGTAGGTACCACTGAGTCTCCATGAAGCGCAGCAC-3'
|
||
Chemicals, enzymes, and other reagents
|
||
SD-Leu Media
|
Fisher BoiReagents
|
Cat# MP114811075
|
Glycerol
|
Fisher BioReagents
|
Cat# BP229-4
|
Protease inhibitor cocktail
|
Sigma-Aldrich
|
Cat# P8215
|
CnBr-activated sepharose beads
|
Cytiva
|
Cat# 17043001
|
1D4 peptide
|
Genscript
|
N/A
|
Lauryl Maltose Neopentyl Glycol (LMNG)
|
Anatrace
|
Cat# NG310
|
Decyl Maltose Neopentyl Glycol (DMNG)
|
Anatrace
|
Cat# NG322
|
TCEP
|
Pierce
|
Cat# PG82090
|
Soy polar lipids
|
Avanti
|
Cat# 541602C
|
MSP2N2
|
Grinkova et al, 2010, Addgene
|
Cat# 29520
|
Bio-Beads SM-2 Absorbent media
|
BioRad
|
Cat# 1528920
|
diC8-PI(4,5)P2
|
Echelon Biosciences
|
Cat# P-4508
|
Ruthenium red
|
Sigma-Aldrich
|
Cat# 2751
|
Nanofectin
|
PAA
|
Cat#
|
jetPEI
|
Polyplus-transfection
|
Cat# 13-101-10N
|
Effectene Transfection Reagent
|
Qiagen
|
Cat# 301425
|
Poly-L-lysine
|
Sigma-Aldrich
|
Cat# P4707
|
Dulbecco’s modified Eagle medium
|
Gibco
|
Cat# 11995-065
|
fetal bovine serum
|
Biochrom
|
Cat# F2442
|
fetal bovine serum
|
Gibco
|
Cat# 12483-020
|
formic acid
|
Sigma-Aldrich
|
Cat# 64-18-6
|
lactic acid
|
Sigma-Aldrich
|
Cat# L1750
|
propionic acid
|
Sigma-Aldrich
|
Cat# P1386
|
benzoic acid
|
Sigma-Aldrich
|
Cat# 242381
|
β-hydroxybutyric acid
|
Sigma-Aldrich
|
Cat# H6501
|
acetic acid
|
Roth
|
Cat# 3738.4
|
Latrunculin A
|
Cayman Chemical
|
Cat# 10010630
|
Cytochalasin-D
|
Sigma-Aldrich
|
Cat# 8273
|
Nocodazole
|
Sigma-Aldrich
|
Cat# 1404
|
Cannabidiol
|
LGC GmbH
|
Cat#13956-29-1
|
2-APB
|
Tocris
|
Cat# 1224
|
Ionomycin calcium salt
|
Tocris
|
Cat# 1704/1
|
Pluronic F-127
|
Biotium Inc
|
Cat# 59000
|
BCECF-AM
|
Biotium Inc
|
Cat# 51010
|
FURA2-AM
|
Biotium Inc
|
Cat# 50029
|
Software
|
||
Patchmaster v2x90.5
|
HEKA Electronik
|
|
Relion-4.0
|
Kimanius et al, 2021
|
|
cryoSPARC v3.3.x and v4.0.x
|
||
COOT
|
Emsley et al, 2010
|
|
PHENIX
|
Afonine et al, 2018
|
|
HOLE
|
Smart et al, 1996
|
|
Chimera
|
Pettersen et al, 2004
|
|
ChimeraX
|
Goddard et al, 2018
|
|
PyMol 2.3
|
Schrodinger, Inc.
|
|
Origin 8.5.1
|
Origin Lab
|
|
Excel
|
Microsoft
|
|
VisiView 2.1.1
|
Visitron Systems GmbH
|
|
Other
|
||
Alkali-Cation Yeast Transformation Kit
|
MP Biomedicals
|
Cat# 112200200
|
QuikChange II XL Site-Directed Mutagenesis Kit
|
Agilent
|
Cat# 200522
|
Quantifoil 1.2/1.3 grid
|
Quantifoil Micro Tools
|
|
Superdex 200 column
|
Cytiva
|
Cat# 28990944
|
Chemicals
Cell culture
Ratiometric pH measurements
Patch clamp electrophysiology
Ratiometric Ca2+-imaging
Protein expression and purification
Cryo-EM sample preparation and data collection
Cryo-EM data processing
Model building
Molecular modeling and simulations
Weak acid-induced cell death
Statistical analysis
Data availability
Author contributions
Disclosure and competing interests statement
Acknowledgements
Supporting Information
References
Information & Authors
Information
Published In
This cover highlights the article The Crk4-Cyc4 complex regulates G2/M transition in Toxoplasma gondii by Lauren M. Hawkins, Elena S. Suvorova and colleagues. The image depicts the normal cell division of the Toxoplasma tachyzoites (top vacuole) and the changes in the parasite cytoskeleton (TgIMC1, green), centrosome (TgCEP250-L1, red), and nucleus (DAPI, blue) that are caused by depletion of TgiRD1.
Scientific image by the authors
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