Summary of Brassica oleracea, version 27.0
Tier 3 Uncurated Database

Database Authors: Bo Xue1, Sue Rhee1, Angela Xu1, Charles Hawkins1, Emily Fryer1

1Carnegie Institution for Science

Summary:
This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp16, Karp11] component of Pathway Tools software version 23.0 and MetaCyc [Caspi18] version 23.0 on 09-Jan-2020 20:51:32.

Sequence Source: Brassica_oleracea.BOL.pep.all.fa

Taxonomic Lineage: cellular organisms, Eukaryota, Viridiplantae, Streptophyta, Streptophytina, Embryophyta, Tracheophyta, Euphyllophyta, Spermatophyta, Magnoliopsida, Mesangiospermae, eudicotyledons, Gunneridae, Pentapetalae, rosids, malvids, Brassicales, Brassicaceae, Brassiceae, Brassica, Brassica oleracea

Synonyms: wild cabbage

Unification Links: NCBI-Taxonomy:3712

Replicon Total Genes Protein Genes RNA Genes Pseudogenes Size (bp) NCBI Link
1 Undisplayed Contigs/Replicons 0 12,262 0 0 0
Total: 12,262 12,262 0 0
Genes without a physical map position: 12,262

Genes: 12,262
Pathways: 431
Enzymatic Reactions: 2,860
Transport Reactions: 94
Polypeptides: 12,263
Protein Complexes: 0
Enzymes: 12,261
Transporters: 889
Compounds: 2,151
tRNAs: 0

Genetic Code Number:
1 -- Standard

PGDB Unique ID: 4J

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 27.0 (software by SRI International) on Thu Jun 6, 2024.