Summary of Anacardium occidentale, version 27.0
Tier 3 Uncurated Database

Database Authors: Bo Xue1, Seung Yon Rhee1, Angela Xu1, Charles Hawkins1, Emily Fryer1

1Carnegie Institution for Science

Summary:
This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp16, Karp11] component of Pathway Tools software version 23.0 and MetaCyc [Caspi18] version 23.0 on 09-Jan-2020 23:12:58.

Sequence Source: Aoccidentale_449_v0.9.protein.fa

Taxonomic Lineage: cellular organisms, Eukaryota, Viridiplantae, Streptophyta, Streptophytina, Embryophyta, Tracheophyta, Euphyllophyta, Spermatophyta, Magnoliopsida, Mesangiospermae, eudicotyledons, Gunneridae, Pentapetalae, rosids, malvids, Sapindales, Anacardiaceae, Anacardium, Anacardium occidentale

Synonyms: cashew, maranon

Unification Links: NCBI-Taxonomy:171929

Replicon Total Genes Protein Genes RNA Genes Pseudogenes Size (bp) NCBI Link
1 Undisplayed Contigs/Replicons 0 9,498 0 0 0
Total: 9,498 9,498 0 0
Genes without a physical map position: 9,498

Genes: 9,498
Pathways: 444
Enzymatic Reactions: 2,888
Transport Reactions: 84
Polypeptides: 18,887
Protein Complexes: 0
Enzymes: 18,877
Transporters: 1,543
Compounds: 2,215
tRNAs: 0

Genetic Code Number:
1 -- Standard

PGDB Unique ID: 6U

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 27.0 (software by SRI International) on Thu Jun 6, 2024.