Summary of Nicotiana tabacum, version 27.0
Tier 3 Uncurated Database

Database Authors: Bo Xue1, Sue Rhee1, Angela Xu1, Charles Hawkins1, Emily Fryer1

1Carnegie Institution for Science

Summary:
This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp16, Karp11] component of Pathway Tools software version 23.0 and MetaCyc [Caspi18] version 23.0 on 10-Jan-2020 09:48:21.

Sequence Source: Nitab-v4.5_proteins_Edwards2017.fa

Taxonomic Lineage: cellular organisms, Eukaryota, Viridiplantae, Streptophyta, Streptophytina, Embryophyta, Tracheophyta, Euphyllophyta, Spermatophyta, Magnoliopsida, Mesangiospermae, eudicotyledons, Gunneridae, Pentapetalae, asterids, lamiids, Solanales, Solanaceae, Nicotianoideae, Nicotianeae, Nicotiana, Nicotiana tabacum

Synonyms: American tobacco, common tobacco, tobacco

Unification Links: NCBI-Taxonomy:4097

Replicon Total Genes Protein Genes RNA Genes Pseudogenes Size (bp) NCBI Link
1 Undisplayed Contigs/Replicons 0 14,173 0 0 0
Total: 14,173 14,173 0 0
Genes without a physical map position: 14,173

Genes: 14,173
Pathways: 489
Enzymatic Reactions: 3,115
Transport Reactions: 89
Polypeptides: 14,176
Protein Complexes: 1
Enzymes: 14,174
Transporters: 1,526
Compounds: 2,460
tRNAs: 0

Genetic Code Number:
1 -- Standard

PGDB Unique ID: 5K

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 27.0 (software by SRI International) on Thu Jun 6, 2024.