Database Authors: Bo Xue1, Seung Yon Rhee1, Angela Xu1, Charles Hawkins1, Emily Fryer1
1Carnegie Institution for Science
Summary:
This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp16, Karp11] component of Pathway Tools software version 23.0 and MetaCyc [Caspi18] version 23.0 on 10-Jan-2020 12:22:53.
Sequence Source: Oryza_rufipogon.OR_W1943.pep.all.fa
Taxonomic Lineage: cellular organisms, Eukaryota, Viridiplantae, Streptophyta, Streptophytina, Embryophyta, Tracheophyta, Euphyllophyta, Spermatophyta, Magnoliopsida, Mesangiospermae, Liliopsida, Petrosaviidae, commelinids, Poales, Poaceae, BOP clade, Oryzoideae, Oryzeae, Oryzinae, Oryza, Oryza rufipogon
Synonyms: common wild rice, red rice, red rice
Unification Links: NCBI-Taxonomy:4529
Replicon | Total Genes | Protein Genes | RNA Genes | Pseudogenes | Size (bp) | NCBI Link |
1 Undisplayed Contigs/Replicons | 0 | 6,555 | 0 | 0 | 0 | |
Total: | 6,555 | 6,555 | 0 | 0 | ||
Genes without a physical map position: | 6,555 |
Genes: | 6,555 | ||
Pathways: | 442 | ||
Enzymatic Reactions: | 2,840 | ||
Transport Reactions: | 74 | ||
Polypeptides: | 8,833 | ||
Protein Complexes: | 0 | ||
Enzymes: | 8,831 | ||
Transporters: | 764 | ||
Compounds: | 2,191 | ||
tRNAs: | 0 |
Genetic Code Number:
1 -- Standard
PGDB Unique ID: 5P
References
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Page generated by Pathway Tools version 27.0 (software by SRI International) on Thu Jun 6, 2024.