Abstract
By the end of the twentieth century, neo-Darwinism had morphed from the New Synthesis to the Hardened Synthesis. At the same time, major contributions from molecular genetics and developmental biology made shortcomings and contradictions in the hardened synthesis evident. More fundamentally, insights from two seemingly disparate sources, phylogenetic systematics and complex systems theory, threatened to erode the foundation of the hardened synthesis by re-elevating the Nature of the Organism to its Darwinian status and returning history to its essential role in biological explanations. Yet, as the twenty-first century dawned, none of those insights were able to penetrate the core of the hardened synthesis. Staunch proponents maintained the status quo, arguing that any aspect of the nature of the organism, including their historicity and cohesive inheritance and developmental natures, could be subsumed by the consensus framework. As a result, none of the core shortcomings recognized in the last 20 years of the twentieth century have been resolved; they have simply been shunted aside by what has become the Extended Hardened Synthesis. Evolutionary theory cannot move forward without the true integration of novel insights. Three independent proposals for conceptual frameworks from the period 1980–1995 make virtually identical core assertions, have complementary foci of attention, and most importantly are radical in the sense that they returned to the roots of Darwinism. They sowed the seeds then for where we are today—on the brink of going “back to the future” to reset the evolutionary narrative, rediscovering and extending the panoramic and inclusive framework that Darwin proposed.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Alberch P, Gould SJ, Oster GF, Wake DB (1979) Size and shape in ontogeny and phylogeny. Paleobiology 5:296–315
Armbruster WS (1994) Early evolution of Dalechampia (Euphorbiaceae): insights from phylogeny, biogeography, and comparative biology. Ann Mo Bot Garden 81:302–316
Avise JC (1989) Gene trees and organismal histories: a phylogenetic approach to population biology. Evolution 43:1192–1208
Avise JC (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge
Bak P (1996) How nature works: the science of self-organized criticality. Copernicus, New York
Barrowclough GF, Gutierrez RJ, Groth GG (1999) Phylogeography of spotted owl (Strix occidentalis) populations based on mitochondrial DNA sequences: gene flow, genetic structure, and a novel biogeographic pattern. Evolution 53:919–931
Beatty J (1994) Theoretical pluralism in biology. In: Grande L, Rieppel O (eds) Interpreting the hierarchy of nature: from systematic patterns to evolutionary process theories. Academic, London, pp 33–57
Boas F (1896) The limitations of the comparative method in anthropology. Science 4:901–908
Boas F (1898) A precise criterion of species. Science 7:860–861
Boucot AJ (1975a) Standing diversity of fossil groups in successive intervals of geologic time viewed in the light of changing levels of provincialism. J Paleontol 49:1105–1111
Boucot AJ (1975b) Evolution and extinction rate controls. Elsevier, New York
Boucot AJ (1981) Principles of benthic marine paleoecology. Academic, New York
Boucot AJ (1982) Paleobiologic evidence of behavioral evolution and coevolution. By the author, Corvallis
Boucot AJ (1983) Does evolution take place in an ecological vacuum? J Paleontol 57:1–30
Boucot AJ (1990) Community evolution: its evolutionary and biostratigraphic significance. In: Miller W III (ed) Paleocommunity temporal dynamics: the long-term development of multi-species assemblies. The Paleontological Society Special Publication No 5, pp 48–70
Brooks DR (1979) Testing the context and extent of host-parasite coevolution. Syst Zool 28:299–307
Brooks DR (1985) Historical ecology: a new approach to studying the evolution of ecological associations. Ann Mo Bot Garden 72:660–680
Brooks DR (1990) Parsimony analysis in historical biogeography and coevolution: methodological and theoretical update. Syst Zool 39:14–30
Brooks DR (1992) Incorporating origins into evolutionary theory. In: Varela F, Dupuy JP (eds) Understanding origins: contemporary ideas on the genesis of life, mind and society. Reidel/Kluwer Associates, Amsterdam, pp 191–212
Brooks DR (1994) Entropy, information and evolving biological systems. Theor Hist Sci 4:31–49
Brooks DR (1997) Biological evolution as a microcosm of cosmological evolution. Bridges 4:9–35
Brooks DR (1998) The unified theory of evolution and selection processes. In: van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 113–128
Brooks DR (2000) The nature of the organism: life has a life of its own. Proc NY Acad Sci 901:257–265
Brooks DR, Agosta SJ (2012) Children of time: the extended synthesis and major metaphors of evolution. Fortschr Zool 29:497–514
Brooks DR, McLennan DA (1990) Searching for a general theory of biological evolution. J Ideas 1:35–46
Brooks DR, McLennan DA (1991) Phylogeny, ecology and behavior: a research program in comparative biology. University of Chicago Press, Chicago
Brooks DR, McLennan DA (1993a) Historical ecology: examining phylogenetic components of community evolution. In: Ricklefs RE, Schluter D (eds) Species diversity in ecological communities. University of Chicago Press, Chicago, pp 267–280
Brooks DR, McLennan DA (1993b) Parascript: parasites and the language of evolution. Smithsonian Institution Press, Washington, DC
Brooks DR, McLennan DA (1994) Historical ecology as a research programme: scope, limitations and the future. In: Eggleton P, Vane-Wright R (eds) Phylogenetics and ecology. Linnaean society symposium series no. 17. Academic Press, London, pp 1–27
Brooks DR, McLennan DA (1997) Biological signals as material phenomena. Rev pensee d’aujord d’hui 25:118–127. [in Japanese]
Brooks DR, McLennan DA (2002) The nature of diversity: an evolutionary voyage of discovery. University of Chicago Press, Chicago
Brooks DR, Wiley EO (1986) Evolution as entropy: toward a unified theory of biology, 1st edn. University of Chicago Press, Chicago
Brooks DR, Wiley EO (1988) Evolution as entropy: toward a unified theory of biology, 2nd edn. University of Chicago Press, Chicago
Brooks DR, Bandoni SM, Macdonald CM, O’Grady RT (1989) Aspects of the phylogeny of the Trematoda Rudolphi, 1808 (Platyhelminthes: Cercomeria). Can J Zool 67:2609–2624
Brooks DR, Hoberg EP, Boeger WA (2019) The Stockholm paradigm: climate change and emerging disease. University of Chicago Press, Chicago
Brown JH (1995) Macroecology. University of Chicago Press, Chicago
Brown JH, Maurer BA (1989) Macroecology: the division of food and space among species on continents. Science 243:1145–1150
Brundin L (1972) Evolution, causal biology and classification. Zool Scripta 1:107–120
Callebaut W, Müller GB, Newman SA (2007) The organismic systems approach: Evo-Devo and the streamlining of the naturalistic agenda. In: Sansom RE, Brandon B (eds) Integrating evolution and development. From theory to practice. MIT Press, Cambridge, MA, pp 25–92
Charlesworth B, Lande R, Slatkin M (1982) A neo-darwinian commentary on macroevolution. Evolution 36:474–498
Chernoff B (1982) Character variation among populations and the analysis of biogeography. Am Zool 22:425–439
Cheverud JM, Dow MM, Leutenegger W (1985) The quantitative assessment of phylogenetic constraints in comparative analyses: sexual dimorphism in body weight among primates. Evolution 39:1335–1351
Clutton-Brock TH, Harvey PH (1977) Primate ecology and social organization. J Zool Lond 183:1–39
Clutton-Brock TH, Harvey PH (1984) Comparative approaches to investigating adaptation. In: Krebs JR, Davies NB (eds) Behavioural ecology: an evolutionary approach, 2nd edn. Sinauer, Sunderland, pp 7–29
Coddington JA (1988) Cladistic tests of adaptational hypotheses. Cladistics 4:3–22
Coddington JA (1990) Bridges between evolutionary pattern and process. Cladistics 6:379–386
Coddington JA (1992) Avoiding phylogenetic bias. Trends Ecol Evol 7:68–69
Coddington JA (1994) The roles of homology and convergence in studies of adaptation. In: Eggleton P, Vane-Wright R (eds) Phylogenetics and ecology. Academic, London, pp 53–78
Collier J (1986) Entropy in evolution. Biol Philos 1:5–24
Collier J (1988) The dynamics of biological order. In: Weber BH, Depew DJ, Smith JD (eds) Information, entropy and evolution: new perspectives on physical and biological evolution. MIT Press, Cambridge, MA, pp 227–242
Collier J (1990) Two faces of Maxwell’s demon reveal the nature of irreversibility. Stud Hist Phil Sci 21:257–268
Collier J (1998) Information increase in biological systems: how does adaptation fit? In: van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 129–140
Collier J (2000) The dynamical basis of information and the origins of semiosis. In: Taborsky E (ed) Semiotics, evolution, energy. Shaker, Aachen, pp 111–138
Collier J, Hooker C (1999) Complexly organised dynamical systems. Open Syst Inf Dyn 6:241–302
Corning PA (1995) Synergy and self-organization in the evolution of complex systems. Syst Res 12:89–121
Cowan G, Pines D, Melzner D (eds) (1994) Complexity: metaphors, models and reality. Addison-Wesley, Reading
Crespi BJ (1996) Comparative analysis of the origins and losses of eusociality: causal mosaics and historical uniqueness. In: Martins EP (ed) Phylogenies and the comparative method in animal behavior. Oxford University Press, New York, pp 253–287
Croizat L, Nelson G, Rosen DE (1974) Centers of origin and related concepts. Syst Zool 23:265–287
Csanyi V (1989) Evolutionary systems and society: a general theory. Duke University Press, Durham
Darwin C (1872) Origin of species. John Murray, London
Day RL, Laland KN, Odling-Schmee FJ (2003) Rethinking adaptation: the niche-constructive perspective. Perspect Biol Med 46:80–95
Depew D, Weber B (1995) Darwinism evolving. Bradford Books, Cambridge
Dietz RS, Holden JC (1966) Miogeoclines (Miogeosynclines) in space and time. J Geol 74:566–583
Donoghue MJ (1990) Why parsimony? Evolution 44:1121–1123
Dunham AE, Miles DB (1985) Patterns of covariation in the life history traits of squamate reptiles: the effects of size and phylogeny reconsidered. Am Nat 126:231–257
Eldredge N (1979) Alternative approaches to evolutionary theory. In: Schwartz JH, Rollins HB (eds) Models and methodologies in evolutionary theory. Bull Carnegie Mus Nat Hist 13:7–19
Eldredge N (1985) The ontology of species. In: Vrba E (ed) Species and speciation, Transvaal Mus. Monogr. No., vol 4, pp 17–20
Eldredge N (1986) Information, economics and evolution. Ann Rev Ecol Syst 17:351–369
Eldredge N (1995) Reinventing Darwin: the great debate at the high table of evolutionary theory. Wiley, New York
Eldredge N, Gould SJ (1972) Punctuated equilibria: an alternative to phyletic gradualism. In: Schopf TJM (ed) Models in paleobiology. W.H. Freeman, San Francisco, pp 82–115
Eldredge N, Salthe SN (1984) Hierarchy and evolution. In: Dawkins R, Ridley M (eds) Oxford surveys in evolutionary biology, vol 1. Oxford University Press, Oxford, pp 182–206
Ellsworth DL, Honeycutt LR, Silvy NJ, Bickham JW, Klimstra WD (1994) Historical biogeography and contemporary patterns of mitochondrial DNA variation in white-tailed deer from the southeastern United States. Evolution 48:122–136
Endler JA (1977) Geographic variation, speciation, and clines. Monographs in population biology #10. Princeton University Press, Princeton
Febregas-Tejeda A, Vergara-Silva F (2018) The emerging structure of the extended evolutionary synthesis: where does evo-devo fit in? Theory Biosci 137:169–184
Felsenstein J (1982) Numerical methods for inferring phylogenetic trees. Q Rev Biol 57:379–404
Felsenstein J (1984) The statistical approach to inferring phylogeny and what it tells us about parsimony and compatibility. In: Duncan T, Stuessy TF (eds) Cladistics: perspectives on the reconstruction of evolutionary history. Columbia University Press, New York, pp 169–191
Felsenstein J (1985) Phylogenies and the comparative method. Am Nat 125:1–15
Felsenstein J (1988) The detection of phylogeny. In: Hawksworth DL (ed) Prospects in systematics. Systematics association. Clarendon, Oxford, pp 112–127
Fitter AH (1995) Interpreting quantitative and qualitative characteristics in comparative analyses. J Ecol 83:730
Frost DR, Kluge AG (1994) A consideration of epistemology in systematic biology, with special reference to species. Cladistics 10:259–293
Futuyma DJ (1989) Speciational trends and the role of species in macroevolution. Am Nat 134:318–321
Gaarder J (1999) Maya. H. Aschehoug (W. Nygaard), Oslo
Garland T Jr, Ives AR (2000) Using the past to predict the present: confidence intervals for regression equations in phylogenetic comparative methods. Am Nat 155:346–364
Garland T Jr, Midford PE, Ives AR (1999) An introduction to phylogenetically based statistical methods, with a new method for confidence intervals on ancestral values. Am Zool 39:374–388
Gittleman JL (1981) The phylogeny of parental care in fishes. Anim Behav 29:936–941
Gladyshev GP (1996) Thermodynamic direction of biological evolution: model and reality. Izvestiya Akad Nauk Ser Biol 4:389–397
Gladyshev GP, Kitaeva DK (1995) On thermodynamic direction of evolutionary processes. Izvestiya Rosk Akad Nauk Ser Biol 6:645–649
Goodwin BC (1982) Development and evolution. J Theor Biol 97:43–55
Goodwin BC, Trainor LEH (1983) The ontogeny and phylogeny of the pentadactyl limb. In: Goodwin BC, Holder N, Wylie CG (eds) Development and evolution. Cambridge University Press, Cambridge, pp 75–98
Gould SJ (1977) Ontogeny and phylogeny. Harvard University Press, Cambridge
Gould SJ (1980) Is a new and general theory of evolution emerging? Paleobiology 6:119–120
Gould SJ (1983) The hardening of the modern synthesis. In: Grene M (ed) Dimensions of Darwinism. Cambridge University Press, Cambridge, pp 71–93
Gould SJ (1986) Evolution and the triumph of homology, or why history matters. Am Sci 74:60–69
Gould SJ, Lewontin RC (1979) The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. Proc R Soc Lond B 205:581–598
Haldane JBS (1927) Possible worlds and other essays. Chatto and Windus, London
Hart MW, Byrne M, Smith MJ (1997) Molecular phylogenetic analysis of life-history evolution in asterinid starfish. Evolution 51:1848–1861
Harvey PH, Clutton-Brock T (1985) Life history variation in primates. Evolution 39:559–581
Harvey PH, Mace GM (1982) Comparisons between taxa and adaptive trends. In: King’s College Sociobiology Group (ed) Current problems in sociobiology. Cambridge University Press, Cambridge, pp 343–361
Harvey PH, Pagel M (1991) The comparative method in evolutionary biology. Oxford University Press, Oxford
Harvey PH, Read AF, Nee S (1995a) Why ecologists need to be phylogenetically challenged. J Ecol 83:535–536
Harvey PH, Read AF, Nee S (1995b) Further remarks on the role of phylogeny in comparative ecology. J Ecol 83:733–734
Hedin MC (1997) Speciational history in a diverse clade of habitat-specialized spiders (Araneae: Nesticidae: Nesticus): inferences from geographic-based sampling. Evolution 51:1929–1945
Hennig W (1950) Grundzüge einer theory der phylogenetischen Systematik. Deutscher Zentralverlag, Berlin
Hennig W (1966) Phylogenetic systematics. University of Illinois Press, Urbana
Herbert B, Anderson KJ (2006) Hunters of Dune. Tor, New York
Hewzulla D, Boulter MC, Benton MJ, Halley JM (1999) Evolutionary patterns from mass originations and mass extinctions. Philos Trans R Soc Lond B 354:463–469
Holland J (1995) Hidden order: how adaptation builds complexity. Addison-Wesley, Reading
Huang S (2011) The molecular and mathematical basis of Waddington’s epigenetic landscape: a framework for post-Darwinian biology? BioEssays 34:149–157. https://doi.org/10.1002/bies.201100031
Huey R, Garland T Jr, Turelli M (2019) Revisiting a key innovation in evolutionary biology: Felsenstein’s “phylogenies and the comparative method”. Am Nat 193:744–772
Hull DL (1988) Science as a process. University of Chicago Press, Chicago
Hunter E (1953) Blackboard jungle. Simon and Schuster, New York
Hutchinson GE (1957) Concluding remarks. Cold Spring Harb Symp Quant Biol 22:415–427
Huxley JS (ed) (1942) Evolution, the modern synthesis. Allen and Unwin, London
Juarrero A (1999) Dynamics in action: intentional behavior as a complex system, 1st edn. MIT, Boston
Juarrero A (2002) Dynamics in action: intentional behavior as a complex system, 2nd edn. MIT, Boston
Kampis G (1991) Self-modifying systems in biology and cognitive science: a new framework for dynamics, information and complexity. Pergamon, Oxford
Kampis G (1998) Evolution as its own cause and effect. In: van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 255–265
Kauffman SA (1986) Autocatalytic sets of proteins. J Theor Biol 119:1–24
Kauffman S (1993) The origins of order: self-organization and selection in evolution. Oxford University Press, Oxford
Kjellstrom G (1996) Evolution as a statistical optimization algorithm. Evol Theory 11:105–117
Kjellstrom G, Taxen L (1981) Stochastic optimization in system design. IEEE Trans Circuit Syst CAS-28:702–715
Klein NK, Brown WM (1994) Intraspecific molecular phylogeny in the yellow warbler (Dendroica petechia), and implications for avian biogeography in the West Indies. Evolution 48:1914–1932
Kluge AG (1990) Species as historical individuals. Biol Philos 5:417–431
Korb KB, Dorin A (2011) Evolution unbound: releasing the arrow of complexity. Biol Philos 26:317–338
Kornet DJ (1993a) Permanent splits as speciation events: a formal reconstruction of the internodal species concept. J Theor Biol 164:407–435
Kornet DJ (1993b) Reconstructing species: demarcations in genealogical networks (Ph.D. Dissertation). Leiden University, Leiden
Kornet DJ, McAllister JW (1993) The composite species concept. In: Kornet DJ (ed) Reconstructing species: demarcations in genealogical networks. Ph.D. Dissertation. Leiden University, Leiden, pp 61–89
Kornet DJ, Metz AJ, Schellinx HAJM (1995) Internodons as equivalence classes in the genealogical network: building-blocks for a rigorous species concept. J Math Biol 34:110–122
Laland KN, Odling-Smee J, Hoppitt W, Uller T (2013) More on how and why: a response to commentaries. Biol Philos 28:793–810
Laland K, Uller T, Feldman M, Sterelny K, Müller GB, Moczek A, Jablonka E, Odling-Smee J (2014) Does evolutionary theory need a re-think? Yes, urgently. Nature 514:161–164
Laland KN, Uller T, Feldman MW, Sterelny K, Muller GB, Moczek A, Jablonka E, Odling-Smee J (2015) The extended evolutionary synthesis: its structure, assumptions and predictions. Proc R Soc B 282:20151019. https://doi.org/10.1098/rspb.2015.1019
Landweber LF, Simon PJ, Wagner TA (1998) Ribozyme engineering and early evolution. Bioscience 48:94–103
Layzer D (1978) A macroscopic approach to population genetics. J Theor Biol 73:769–788
Layzer D (1980) Genetic variation and progressive evolution. Am Nat 115:809–826
Lessios HA, Kessing BD, Roberston DR, Paulay G (1999) Phylogeography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution 53:806–817
Lewontin RC (1966) The principle of historicity in evolution. In: Moorhead PS, Kaplan MM (eds) Mathematical challenges to the neo-Darwinian interpretation of evolution. Alan R. Liss, New York, pp 81–94
Lewontin RC (1978) Adapt Sci Am 239:212–230
Lewontin RC (1983) Gene, organism, and environment. In: Bendall DS (ed) Evolution from molecules to men. Cambridge University Press, Cambridge, pp 273–285
Losos JB, Arnold SJ, Bejerano G, Brodie ED III, Hibbett D, Hoekstra HE, Mindell DP, Monteiro A, Moritz C, Orr HA, Petrov DA, Renner SS, Ricklefs RE, Soltis PS, Turner TL (2013) Evolutionary biology for the 21st century. PLoS Biol 11:e1001466. https://doi.org/10.1371/journal.pbio.1001466
Löther R (1990) Species and monophyletic taxa as individual substantial systems. In: Baas P, Kalkman K, Geesink R (eds) The plant diversity of Malesia. Kluwer Academic, The Hague, pp 371–378
Mabee PM (1993) Phylogenetic interpretation of ontogenetic change: sorting out the actual and artefactual in an empirical case study of centrarchid fishes. Biol J Linn Soc 107:175–291
Mabee PM (2000) Developmental data and phylogenetic systematics: evolution of the vertebrate limb. Am Zool 40:789–800
Mabee PM, Humphries J (1993) Coding polymorphic data: examples from allozymes and ontogeny. Syst Biol 42:166–181
Maddison WP (1990) A method for testing the correlated evolution of two binary characters: are gains and losses concentrated on certain branches of a phylogenetic tree? Evolution 44:539–557
Maddison DR (1994) Phylogenetic methods for inferring the evolutionary history and processes of change in discretely valued characters. Annu Rev Entomol 39:267–292
Maddison WP, Maddison DR (2000) MacClade. Analysis of hylogeny and character evolution. Version 4. Sinauer Association, Sunderland
Matsuno K (1989) Protobiology: physical basis of biology. CRC, Boca Raton
Matsuno K (1995) Consumer power as the major evolutionary force. J Theor Biol 173:137–145
Matsuno K (1998) Competence of natural languages for describing the physical origin of life. In: van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 295–306
Maurer BA (1999) Untangling ecological complexity: the macroscopic perspective. University of Chicago Press, Chicago
Maurer BA, Brooks DR (1991) Energy flow and entropy production in biological systems. J Ideas 2:48–53
Maurer BA, Brown JH, Rusler RD (1992) The micro and macro in body size evolution. Evolution 46:939–953
Maynard Smith J (1968) Mathematical ideas in biology. Cambridge University Press, Cambridge
Maynard Smith J (1970) Time in the evolutionary process. Stud Gen 23:266–272
Maynard Smith J (1972) On evolution. Edinburgh University Press, Edinburgh
Maynard Smith J (1974) Models in ecology. Cambridge University Press, Cambridge
Maynard Smith J (1976) What determines the rate of evolution? Am Nat 110:331–338
Maynard Smith J (1978) The evolution of sex. Cambridge University Press, Cambridge
Maynard Smith J (ed) (1981) Evolution now. Macmillan, London
Maynard Smith J (1986) The problems of biology. Oxford University Press, Oxford
Maynard Smith J (1988) Did Darwin get it right?: essays on games, sex and evolution. Chapman & Hall, London
Maynard Smith J (1989) Evolutionary genetics. Oxford University Press, Oxford
Maynard Smith J (1993) The theory of evolution, 2nd edn. Penguin Books, London
Maynard Smith J, Price GR (1973) The logic of animal conflict. Nature 246:15–18
Maynard Smith J, Szathmary E (1995) The major transitions in evolution. W.H. Freeman, Oxford
Maynard Smith J, Burian R, Kauffman S, Alberch P, Campbell J, Goodwin B, Lande R, Raup D, Wolpert L (1985) Developmental constraints and evolution. Q Rev Biol 60:265–287
McKitrick MC (1994) On homology and ontological relationship of parts. Syst Biol 43:1–10
McLennan DA (1991) Integrating phylogeny and experimental ethology: from pattern to process. Evolution 45:1773–1178
McLennan DA (1993) Phylogenetic relationships in the Gasterosteidae: an updated tree based on behavioral characters with a discussion of homoplasy. Copeia 1993:318–326
McLennan DA (1994) A phylogenetic approach to the evolution of fish behaviour. Fish Biol Fish 4:430–460
McLennan DA (1996) Integrating phylogenetic and experimental analyses: the evolution of male and female nuptial coloration in the Gasterosteidae. Syst Biol 45:261–277
McLennan DA (2000) The macroevolutionary diversification of female and male components of the stickleback breeding system. Behaviour 137:1029–1045
McLennan DA, Brooks DR, McPhail JD (1988) The benefits of communication between comparative ethology and phylogenetic systematics: a case study using gasterosteid fishes. Can J Zool 66:2177–2190
McShea DW, Changizi MA (2003) Three puzzles of hierarchical evolution. Integr Comp Biol 43:74–81
Mesoudi A, Blanchet AS, Charmantier A, Danchin E, Fogarty L, Jablonka E, Laland KN, Morgan TJH, Muller GB, Odling-Smee FJ, Pujol B (2013) Is non-genetic inheritance just a proximate mechanism? A corroboration of the extended evolutionary synthesis. Biol Theory 7:189–195
Morgan TH (1932) The scientific basis of evolution. W.W. Norton and Co, New York
Moyers B (1987) The power of myth. Public Broadcasting System television series
Muller GB (2017) Why an extended evolutionary synthesis is necessary. Interface Focus 7:20170065. https://doi.org/10.1098/rsfs.2017.0065
Myers CE, Saupe EE (2013) A macroevolutionary expansion of the modern synthesis and the importance of extrinsic abiotic factors. Palaeontology 2013:1–20
Nelson G, Platnick N (1981) Systematics and biogeography: cladistics and vicariance. Columbia University Press, New York
Nelson G, Rosen DE (eds) (1980) Vicariance biogeography: a critique. Columbia University Press, New York
Newman SA (1970) Note on complex systems. J Theor Biol 28:411–413
Niklas KJ (1999) Evolutionary walks through a land plant morphospace. J Exp Bot 50:39–52
Niklas K (2004) Computer models of early plant evolution. Annu Rev Earth Planet Sci 32:47–66
O’Hara RJ (1993) Systematic generalization, historical fate, and the species problem. Syst Biol 42:231–246
O’Hara RJ (1994) Evolutionary history and the species problem. Am Zool 34:12–22
Odling-Schmee FJ (1988) Niche constructing phenotypes. In: Plotkin HC (ed) The role of behavior in evolution. MIT Press, Cambridge, MA, pp 73–132
Odling-Schmee FJ, Laland KN, Feldman MW (1996) Niche construction. Am Nat 147:641–648
Pagel MD (1994) Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. Proc R Soc Lond B 255:37–45
Patterson C (1982) Morphological characters and homology. In: Joysey KA, Friday AE (eds) Problems of phylogeny reconstruction. Academic, London, pp 21–74
Phillips CA (1994) Geographic distribution of mitochondrial DNA variants and the historical biogeography of the spotted salamander, Ambystoma maculatum. Evolution 48:597–607
Pigliucci M (2007) Do we need an extended evolutionary synthesis? Evolution 61:2743–2749
Pigliucci M (2009) An extended synthesis for evolutionary biology. Ann NY Acad Sci 1168:218–228
Pigliucci M, Muller GB (eds) (2010) Evolution – the extended synthesis. MIT, Cambridge
Platnick NI, Nelson G (1978) A method of analysis for historical biogeography. Syst Zool 27:1–16
Raff RA (1996) The shape of life: genes, development, and the evolution of animal form. University of Chicago Press, Chicago
Raup DM, Gould SJ (1974) Stochastic simulation and evolution of morphology – towards a nomothetic paleontology. Syst Zool 23:305–322
Read AF, Nee S (1995) Inference from binary comparative data. J Theor Biol 173:99–108
Reilly SM, Wiley EO, Meinhardt DJ (1997) An integrative approach to heterochrony: the distinction between interspecific and intraspecific phenomena. Biol J Linn Soc 60:119–143
Ricklefs RE (1987) Community diversity: relative roles of local and regional processes. Science 235:167–171
Riddle BR (1996) The molecular phylogeographic bridge between deep and shallow history in continental biotas. Trends Ecol Evol 11:207–211
Ridley M (1983) The explanation of organic diversity: the comparative method and adaptations for mating. Clarendon, Oxford
Riedl R (1978) Order in living organisms. Wiley, New York
Rieppel O (1992) Homology and logical fallacy. J Evol Biol 5:701–715
Rocha LM (1998) Selected self-organization and the semiotics of evolutionary systems. In: Van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 341–358
Rose MR, Oakley TH (2007) The new biology: beyond the modern synthesis. Biol Direct 2:30. https://doi.org/10.1186/1745-6150-2-30
Rosen DE (1975) A vicariance model of Caribbean biogeography. Syst Zool 24:431–464
Rosen DE (1978) Vicariant patterns and historical explanation in biogeography. Syst Zool 27:159–188
Rosen DE (1979) Fishes from the uplands and intermontane basins of Guatemala: revisionary studies and comparative biogeography. Bull Am Mus Nat Hist 162:267–376
Rosen DE (1985) Geological hierarchies and biogeographic congruence in the Caribbean. Ann Mo Bot Garden 72:636–659
Ross HH (1972a) The origin of species diversity in ecological communities. Taxon 21:253–259
Ross HH (1972b) An uncertainty principle in ecological evolution. In: Allen RT, James FC (eds) A symposium on ecosystematics. University Arkansas Mus. occ. paper, vol 4, pp 133–157
Roth VL (1984) On homology. Biol J Linn Soc 22:13–29
Roth VL (1988) The biological basis of homology. In: Humphries CJ (ed) Ontogeny and systematics. Columbia University Press, New York, pp 1–26
Roth VL (1991) Homology and hierarchies: problems solved and unresolved. J Evol Biol 4:167–194
Roth VL (1994) Within and between organisms: replicators, lineages, and homologues. In: Hall BK (ed) Homology: the hierarchical basis of comparative biology. New Academic, New York, pp 301–337
Salthe SN (1985) Evolving hierarchical systems: their structure and representation. Columbia University Press, New York
Salthe SN (1993) Development and evolution: complexity and change in biology. MIT, Boston
Salthe SN (1998) The role of natural selection theory in understanding evolutionary systems. In: Van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 13–20
Schneider TD (1988) Information and entropy of patterns in genetic switches. In: Erickson GJ, Smith CR (eds) Maximum entropy and Bayesian methods in science and engineering, vol 2. Kluwer, Brussels, pp 147–154
Schwenk K (1995) A utilitarian approach to evolutionary constraint. Zoology 98:251–262
Schwenk K, Wagner GP (2001) Function and the evolution of phenotypic stability: connecting pattern with process. Am Zool 41:552–563
Seutin G, Brawm J, Ricklefs RE, Bermingham E (1993) Genetic divergence among populations of a tropical passerine, the streaked saltator (Saltator albicolllis). Auk 110:117–126
Shaffer HB, McKnight ML (1996) The polytypic species revisited: genetic differentiation and molecular phylogenetics of the tiger salamander Ambystoma tigrinum (Amphibia: Caudata) complex. Evolution 50:417–433
Sillén-Tullberg B (1993) The effect of biased inclusion of taxa on the correlation between discrete characters in phylogenetic trees. Evolution 47:1182–1191
Simpson GG (1944) Tempo and mode in evolution. Columbia University Press, New York
Simpson GG (1953) The major features of evolution. Columbia University Press, New York
Smith JDH (1988) A class of mathematical models for evolution and hierarchical information theory. Inst Math Appl Preprint Series 396:1–13
Smith JDH (1998) Canonical ensembles, competing species, and the arrow of time. In: Van de Vijver G, Salthe SN, Delpos M (eds) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht, pp 141–154
Sober E (1988) Reconstructing the past: parsimony, evolution and inference. MIT, Cambridge
Sokal RR, Sneath PHA (1963) The principles of numerical taxonomy. W. H. Freeman, San Francisco, CA
Soto A, Longo G, Miquel PA, Montevil M, Mossio M, Perret N, Pocheville A, Sonnenschein C (2016) Toward a theory of organisms: three founding principles in search of a useful integration. Prog Biophys Mol Biol 122:77–82
Stenseth NC (1984) Why mathematical models in evolutionary ecology? In: Cooley JH, Golley FB (eds) Trends for ecological research for the 1980’s. Plenum, New York, pp 239–287
Stocking GW Jr (1968) Race, culture and evolution. University of Chicago Press, Chicago, IL
Swofford DL, Olsen GJ (1990) Phylogeny reconstruction. In: Hillis DM, Moritz C (eds) Molecular systematics. Sinauer Assoc, Sunderland, pp 411–501
Trivers RL (1972) Parental investment and sexual selection. In: Campbell B (ed) Sexual selection and the descent of man, 1871–1971. Aldine, Chicago, pp 136–179
Tuomi J, Vuorisalo T, Laihonen P (1988) Components of selection: an expanded theory of natural selection. In: de Jong G (ed) Population genetics and evolution. Springer, Berlin, pp 109–118
Ulanowicz RE (1986) Growth and development: ecosystems phenomenology. Springer, New York
Ulanowicz RE (1997) Ecology: the ascendent perspective. Columbia University Press, New York
van de Vijver G, Salthe SN, Delpos M (eds) (1998) Evolutionary systems: biological and epistemological perspectives on selection and self-organization. Kluwer Academic, Dordrecht
Vogel G (1998) Tracking the history of the genetic code. Science 281:329–331
Wagner GP (1984) Coevolution of functionally constrained characters: prerequisites for adaptive versatility. Biosystems 17:51–55
Wagner GP (1985) The adaptive significance of developmental constraints. In: Proceedings of international symposium evolution and morphogenesis. Academia, Prague, pp 97–103
Wagner GP, Schwenk K (2000) Evolutionary stable configurations: functional integration and the evolution of phenotypic stability. Evol Biol 31:155–217
Wake DB, Roth G (eds) (1989) Complex organismal functions: integration and evolution in vertebrates. Wiley, New York
Wake DB, Roth G, Wake MH (1983) On the problem of stasis in organismal evolution. J Theor Biol 101:211–224
Wanntorp H-E (1983) Historical constraints in adaptation theory: traits and non-traits. Oikos 41:157–160
Wanntorp H-E, Brooks DR, Nilsson T, Nylin S, Ronqvist F, Stearns SC, Weddell N (1990) Phylogenetic approaches in ecology. Oikos 57:119–132
Watts P (2006) Blindsight. Tor, New York
Weber BH (2011) Extending and expanding the Darwinian synthesis: the role of complex systems dynamics. Stud Hist Phil Biol Biomed Sci 42:75–81
Weber BH, Depew D, Smith JD (1988) Entropy, information and evolution. MIT, Cambridge
Werdelin L, Sillen-Tullberg B (1995) A comparison of two methods to study correlated discrete characters on phylogenetic trees. Cladistics 11:265–277
Westoby M, Leishman MR, Lord JM (1995a) On misinterpreting the “phylogenetic correction”. J Ecol 83:531–534
Westoby M, Leishman MR, Lord JM (1995b) Further remarks on phylogenetic correction. J Ecol 83:727–730
Wicken JS (1987) Evolution, thermodynamics and information: extending the Darwinian paradigm. Oxford University Press, Oxford
Wiley EO (1978) The evolutionary species concept reconsidered. Syst Zool 27:17–26
Wiley EO (1980) Is the evolutionary species concept fiction? A consideration of classes, individuals, and historical entities. Syst Zool 29:76–80
Wiley EO (1981) Phylogenetics: the theory and practice of phylogenetic systematics. Wiley, New York
Wiley EO (1986) The evolutionary basis for phylogenetic classification. In: Hovenkamp P (ed) Systematics and evolution: a matter of diversity. Utrecht University Press, Utrecht, pp 55–64
Wiley EO, Brooks DR (1982) Victims of history – a nonequilibrium approach to evolution. Syst Zool 31:1–24
Wiley EO, Siegel-Causey DJ, Brooks DR, Funk VA (1991) The compleat cladist: a primer of phylogenetic procedures. Special Publ. Mus. Nat. Hist. Univ. Kansas, Lawrence
Wilson EO (1965) A consistency test for phylogenies based on contemporaneous species. Syst Zool 14:214–220
Wimsatt WC, Schanck JC (1988) Adaptations and the means of their avoidance. In: Nitecki MH (ed) Evolutionary progress. University of Chicago Press, Chicago, pp 000–000
Windley BF (1986) The evolving continents. Wiley, New York
Wray GA, Lowe CJ (2000) Developmental regulatory genes and echinoderm evolution. Syst Biol 49:28–51
Wray GA, Hoekstra HE, Futuyma DJ, Lenski RE, Mackay TFC, Schluter D, Strassman JE (2014) [Does evolutionary theory need a rethink?] No, all is well. Nature 514:161–164
Zink RM (1994) The geography of mitochondrial DNA variation, population structure, hybridization, and species limits in the fox sparrow (Passerella iliaca). Evolution 48:96–111
Zink RM (1996) Comparative phylogeography in North American birds. Evolution 50:308–317
Zotin AI, Zotina RS (1978) Experimental basis for qualitative phenomenological theory of development. In: Lamprecht I, Zotin AI (eds) Thermodynamics of biological processes. de Gruyter, Berlin, pp 61–84
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
Copyright information
© 2020 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Agosta, S.J., Brooks, D.R. (2020). Criticism, Resistance, a Glimmer of Hope. In: The Major Metaphors of Evolution. Evolutionary Biology – New Perspectives on Its Development, vol 2. Springer, Cham. https://doi.org/10.1007/978-3-030-52086-1_5
Download citation
DOI: https://doi.org/10.1007/978-3-030-52086-1_5
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-52085-4
Online ISBN: 978-3-030-52086-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)