Advertisement
No access
Review

Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System?

Science
24 Dec 2010
Vol 330, Issue 6012
pp. 1768-1773

A Gutsy Analysis

Efforts to sequence the human microbiome—the genomes of all the microbes that inhabit our bodies—have demonstrated its enormous diversity. Analyses to probe the various functions of the microbiota, particularly of those that reside in the gut, have revealed that our microbiota has a profound impact on the development and function of our immune systems. Lee and Mazmanian (p. 1768) review how the microbiota influences the development of the adaptive immune system. Specific species and families of microbiota support the differentiation of particular populations of T cells, and alterations in intestinal microbiota affect the development of inflammation and autoimmunity.

Abstract

Although microbes have been classically viewed as pathogens, it is now well established that the majority of host-bacterial interactions are symbiotic. During development and into adulthood, gut bacteria shape the tissues, cells, and molecular profile of our gastrointestinal immune system. This partnership, forged over many millennia of coevolution, is based on a molecular exchange involving bacterial signals that are recognized by host receptors to mediate beneficial outcomes for both microbes and humans. We explore how specific aspects of the adaptive immune system are influenced by intestinal commensal bacteria. Understanding the molecular mechanisms that mediate symbiosis between commensal bacteria and humans may redefine how we view the evolution of adaptive immunity and consequently how we approach the treatment of numerous immunologic disorders.

Get full access to this article

View all available purchase options and get full access to this article.

References and Notes

1
Turnbaugh P. J., et al., The human microbiome project. Nature 449, 804 (2007).
2
Qin J., et al., A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59 (2010).
3
Falk P. G., Hooper L. V., Midtvedt T., Gordon J. I., Creating and maintaining the gastrointestinal ecosystem: What we know and need to know from gnotobiology. Microbiol. Mol. Biol. Rev. 62, 1157 (1998).
4
Macpherson A. J., Harris N. L., Interactions between commensal intestinal bacteria and the immune system. Nat. Rev. Immunol. 4, 478 (2004).
5
Pollard M., Sharon N., Responses of the Peyer’s Patches in Germ-Free Mice to Antigenic Stimulation. Infect. Immun. 2, 96 (1970).
6
Hoshi H., et al., Lymph follicles and germinal centers in popliteal lymph nodes and other lymphoid tissues of germ-free and conventional rats. Tohoku J. Exp. Med. 166, 297 (1992).
7
Glaister J. R., Factors affecting the lymphoid cells in the small intestinal epithelium of the mouse. Int. Arch. Allergy Appl. Immunol. 45, 719 (1973).
8
Lundin A., et al., Gut flora, Toll-like receptors and nuclear receptors: A tripartite communication that tunes innate immunity in large intestine. Cell. Microbiol. 10, 1093 (2008).
9
Matsumoto S., Setoyama H., Umesaki Y., Differential induction of major histocompatibility complex molecules on mouse intestine by bacterial colonization. Gastroenterology 103, 1777 (1992).
10
Imaoka A., et al., Proliferative recruitment of intestinal intraepithelial lymphocytes after microbial colonization of germ-free mice. Eur. J. Immunol. 26, 945 (1996).
11
Umesaki Y., Setoyama H., Matsumoto S., Okada Y., Expansion of alpha beta T-cell receptor-bearing intestinal intraepithelial lymphocytes after microbial colonization in germ-free mice and its independence from thymus. Immunology 79, 32 (1993).
12
Duan J., Chung H., Troy E., Kasper D. L., Microbial colonization drives expansion of IL-1 receptor 1-expressing and IL-17-producing gamma/delta T cells. Cell Host Microbe 7, 140 (2010).
13
Niess J. H., Leithäuser F., Adler G., Reimann J., Commensal gut flora drives the expansion of proinflammatory CD4 T cells in the colonic lamina propria under normal and inflammatory conditions. J. Immunol. 180, 559 (2008).
14
Bouskra D., et al., Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis. Nature 456, 507 (2008).
15
Noverr M. C., Huffnagle G. B., Does the microbiota regulate immune responses outside the gut? Trends Microbiol. 12, 562 (2004).
16
Mazmanian S. K., Liu C. H., Tzianabos A. O., Kasper D. L., An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122, 107 (2005).
17
Bauer H., et al., The response of the lymphatic tissue to the microbial flora. Studies on germfree mice. Am. J. Pathol. 42, 471 (1963).
18
Smith K., McCoy K. D., Macpherson A. J., Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota. Semin. Immunol. 19, 59 (2007).
19
Clarke T. B., et al., Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity. Nat. Med. 16, 228 (2010).
20
Inagaki H., Suzuki T., Nomoto K., Yoshikai Y., Increased susceptibility to primary infection with Listeria monocytogenes in germfree mice may be due to lack of accumulation of L-selectin+ CD44+ T cells in sites of inflammation. Infect. Immun. 64, 3280 (1996).
21
Stecher B., et al., Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota. PLoS Biol. 5, e244 (2007).
22
Lupp C., et al., Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae. Cell Host Microbe 2, 119 (2007).
23
Bettelli E., et al., Reciprocal developmental pathways for the generation of pathogenic effector TH17 and regulatory T cells. Nature 441, 235 (2006).
24
Fontenot J. D., et al., Regulatory T cell lineage specification by the forkhead transcription factor foxp3. Immunity 22, 329 (2005).
25
Foussat A., et al., A comparative study between T regulatory type 1 and CD4+CD25+ T cells in the control of inflammation. J. Immunol. 171, 5018 (2003).
26
Battaglia M., Gregori S., Bacchetta R., Roncarolo M. G., Tr1 cells: From discovery to their clinical application. Semin. Immunol. 18, 120 (2006).
27
Sakaguchi S., et al., Regulatory T cells and immune tolerance. Cell 133, 775 (2008).
28
Rubtsov Y. P., et al., Regulatory T cell-derived interleukin-10 limits inflammation at environmental interfaces. Immunity 28, 546 (2008).
29
Coombes J. L., et al., A functionally specialized population of mucosal CD103+ DCs induces Foxp3+ regulatory T cells via a TGF-beta and retinoic acid-dependent mechanism. J. Exp. Med. 204, 1757 (2007).
30
Boirivant M., Strober W., The mechanism of action of probiotics. Curr. Opin. Gastroenterol. 23, 679 (2007).
31
Coombes J. L., Maloy K. J., Control of intestinal homeostasis by regulatory T cells and dendritic cells. Semin. Immunol. 19, 116 (2007).
32
O’Mahony C., et al., Commensal-induced regulatory T cells mediate protection against pathogen-stimulated NF-kappaB activation. PLoS Pathog. 4, e1000112 (2008).
33
Sokol H., et al., Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. U.S.A. 105, 16731 (2008).
34
Mazmanian S. K., Kasper D. L., The love-hate relationship between bacterial polysaccharides and the host immune system. Nat. Rev. Immunol. 6, 849 (2006).
35
Mazmanian S. K., Round J. L., Kasper D. L., A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453, 620 (2008).
36
Strauch U. G., et al., Influence of intestinal bacteria on induction of regulatory T cells: Lessons from a transfer model of colitis. Gut 54, 1546 (2005).
37
Östman S., Rask C., Wold A. E., Hultkrantz S., Telemo E., Impaired regulatory T cell function in germ-free mice. Eur. J. Immunol. 36, 2336 (2006).
38
Min B., et al., Gut flora antigens are not important in the maintenance of regulatory T cell heterogeneity and homeostasis. Eur. J. Immunol. 37, 1916 (2007).
39
Ivanov I. I., et al., Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine. Cell Host Microbe 4, 337 (2008).
40
Zaph C., et al., Commensal-dependent expression of IL-25 regulates the IL-23-IL-17 axis in the intestine. J. Exp. Med. 205, 2191 (2008).
41
Gaboriau-Routhiau V., et al., The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses. Immunity 31, 677 (2009).
42
Round J. L., Mazmanian S. K., Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota. Proc. Natl. Acad. Sci. U.S.A. 107, 12204 (2010).
43
Atarashi K., et al., Science 10.1126/science.1198469 (2010).
44
Dobber R., Hertogh-Huijbregts A., Rozing J., Bottomly K., Nagelkerken L., The involvement of the intestinal microflora in the expansion of CD4+ T cells with a naive phenotype in the periphery. Dev. Immunol. 2, 141 (1992).
45
Ivanov I. I., et al., The orphan nuclear receptor RORgammat directs the differentiation program of proinflammatory IL-17+ T helper cells. Cell 126, 1121 (2006).
46
Atarashi K., et al., ATP drives lamina propria T(H)17 cell differentiation. Nature 455, 808 (2008).
47
Ivanov I. I., et al., Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139, 485 (2009).
48
Snel J., et al., Interactions between gut-associated lymphoid tissue and colonization levels of indigenous, segmented, filamentous bacteria in the small intestine of mice. Can. J. Microbiol. 44, 1177 (1998).
49
Talham G. L., Jiang H. Q., Bos N. A., Cebra J. J., Segmented filamentous bacteria are potent stimuli of a physiologically normal state of the murine gut mucosal immune system. Infect. Immun. 67, 1992 (1999).
50
Umesaki Y., Okada Y., Matsumoto S., Imaoka A., Setoyama H., Segmented filamentous bacteria are indigenous intestinal bacteria that activate intraepithelial lymphocytes and induce MHC class II molecules and fucosyl asialo GM1 glycolipids on the small intestinal epithelial cells in the ex-germ-free mouse. Microbiol. Immunol. 39, 555 (1995).
51
Noverr M. C., Huffnagle G. B., The ‘microflora hypothesis’ of allergic diseases. Clin. Exp. Allergy 35, 1511 (2005).
52
Round J. L., Mazmanian S. K., The gut microbiota shapes intestinal immune responses during health and disease. Nat. Rev. Immunol. 9, 313 (2009).
53
Ochoa-Repáraz J., et al., A polysaccharide from the human commensal Bacteroides fragilis protects against CNS demyelinating disease. Mucosal Immunol. 3, 487 (2010).
54
Wu H. J., et al., Gut-residing segmented filamentous bacteria drive autoimmune arthritis via T helper 17 cells. Immunity 32, 815 (2010).
55
Lee Y. K., et al., Proc. Natl. Acad. Sci. U.S.A. 10.1073/pnas.1000082107 (2010).
56
Chow J., Mazmanian S. K., A pathobiont of the microbiota balances host colonization and intestinal inflammation. Cell Host Microbe 7, 265 (2010).
57
Baranzini S. E., et al., Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature 464, 1351 (2010).
58
Hooper L. V., Do symbiotic bacteria subvert host immunity? Nat. Rev. Microbiol. 7, 367 (2009).
59
Zhou L., et al., TGF-beta-induced Foxp3 inhibits T(H)17 cell differentiation by antagonizing RORgammat function. Nature 453, 236 (2008).
60
Yang X. O., et al., Molecular antagonism and plasticity of regulatory and inflammatory T cell programs. Immunity 29, 44 (2008).
61
Weaver C. T., Hatton R. D., Mangan P. R., Harrington L. E., IL-17 family cytokines and the expanding diversity of effector T cell lineages. Annu. Rev. Immunol. 25, 821 (2007).
62
McFall-Ngai M.,. Nature 445, 153 (2007).
63
Baranzini S. E., The genetics of autoimmune diseases: A networked perspective. Curr. Opin. Immunol. 21, 596 (2009).

(0)eLetters

eLetters is a forum for ongoing peer review. eLetters are not edited, proofread, or indexed, but they are screened. eLetters should provide substantive and scholarly commentary on the article. Embedded figures cannot be submitted, and we discourage the use of figures within eLetters in general. If a figure is essential, please include a link to the figure within the text of the eLetter. Please read our Terms of Service before submitting an eLetter.

Log In to Submit a Response

No eLetters have been published for this article yet.

Information & Authors

Information

Published In

Science
Volume 330 | Issue 6012
24 December 2010

Submission history

Published in print: 24 December 2010

Permissions

Request permissions for this article.

Acknowledgments

We thank members of the Mazmanian laboratory for their critical review of the manuscript. Supported by NIH grants DK078938, DK083633, and AI088626; the Damon Runyon Cancer Research Foundation; and the Crohn’s and Colitis Foundation of America (S.K.M.).

Authors

Affiliations

Yun Kyung Lee
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Sarkis K. Mazmanian* [email protected]
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

Notes

*
To whom correspondence should be addressed. E-mail: [email protected]

Metrics & Citations

Metrics

Article Usage

Altmetrics

Citations

Cite as

Export citation

Select the format you want to export the citation of this publication.

Cited by

  1. Specialization of mucosal immunoglobulins in pathogen control and microbiota homeostasis occurred early in vertebrate evolution, Science Immunology, 5, 44, (2021)./doi/10.1126/sciimmunol.aay3254
    Abstract
  2. The ecology of the microbiome: Networks, competition, and stability, Science, 350, 6261, (663-666), (2021)./doi/10.1126/science.aad2602
    Abstract
  3. The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis, Science, 341, 6145, (569-573), (2021)./doi/10.1126/science.1241165
    Abstract
  4. Commensal Bacteria Control Cancer Response to Therapy by Modulating the Tumor Microenvironment, Science, 342, 6161, (967-970), (2021)./doi/10.1126/science.1240527
    Abstract
  5. Compartmentalized Control of Skin Immunity by Resident Commensals, Science, 337, 6098, (1115-1119), (2021)./doi/10.1126/science.1225152
    Abstract
  6. Alternative Actions for Antibiotics, Science, 332, 6029, (547-548), (2021)./doi/10.1126/science.1205970
    Abstract
Loading...

View Options

Check Access

Log in to view the full text

AAAS ID LOGIN

AAAS login provides access to Science for AAAS Members, and access to other journals in the Science family to users who have purchased individual subscriptions.

Log in via OpenAthens.
Log in via Shibboleth.

More options

Register for free to read this article

As a service to the community, this article is available for free. Login or register for free to read this article.

Purchase this issue in print

Buy a single issue of Science for just $15 USD.

View options

PDF format

Download this article as a PDF file

Download PDF

Full Text

FULL TEXT

Media

Figures

Multimedia

Tables

Share

Share

Share article link

Share on social media