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Nature-Inspired Bioorthogonal Reaction: Development of β-Caryophyllene as a Chemical Reporter in Tetrazine Ligation

  • Yunfei Wu
    Yunfei Wu
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    Collaborative Innovation Center for Biotherapy, State Key Laboratory of Biotherapy and Cancer Center, West China Medical School, Sichuan University, Chengdu 610041, China
    More by Yunfei Wu
  • Jiulong Hu
    Jiulong Hu
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    State Key Laboratory of Membrane Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
    More by Jiulong Hu
  • Chen Sun
    Chen Sun
    State Key Laboratory of Membrane Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
    More by Chen Sun
  • Yu Cao
    Yu Cao
    State Key Laboratory of Membrane Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
    More by Yu Cao
  • Yuanhe Li
    Yuanhe Li
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    More by Yuanhe Li
  • Fayang Xie
    Fayang Xie
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    More by Fayang Xie
  • Tianyin Zeng
    Tianyin Zeng
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    More by Tianyin Zeng
  • Bing Zhou*
    Bing Zhou
    State Key Laboratory of Membrane Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
    *E-mail: [email protected]
    More by Bing Zhou
  • Juanjuan Du*
    Juanjuan Du
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    *E-mail: [email protected]
    More by Juanjuan Du
  • , and 
  • Yefeng Tang*
    Yefeng Tang
    School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing 100084, China
    Collaborative Innovation Center for Biotherapy, State Key Laboratory of Biotherapy and Cancer Center, West China Medical School, Sichuan University, Chengdu 610041, China
    *E-mail: [email protected]
    More by Yefeng Tang
Cite this: Bioconjugate Chem. 2018, 29, 7, 2287–2295
Publication Date (Web):May 31, 2018
https://doi.org/10.1021/acs.bioconjchem.8b00283
Copyright © 2018 American Chemical Society

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    Abstract

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    A nature-inspired bioorthogonal reaction has been developed, hinging on an inverse-electron-demand Diels–Alder reaction of tetrazine with β-caryophyllene. Readily accessible from the cheap starting material through a scalable synthesis, the newly developed β-caryophyllene chemical reporter displays appealing reaction kinetics and excellent biocompatibility, which renders it applicable to both in vitro protein labeling and live cell imaging. Moreover, it can be used orthogonally to the strain-promoted alkyne–azide cycloaddition for dual protein labeling. This work not only provides an alternative to the existing bioorthogonal reaction toolbox, but also opens a new avenue to utilize naturally occurring scaffolds as bioorthogonal chemical reporters.

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    The Supporting Information is available free of charge on the ACS Publications website at DOI: 10.1021/acs.bioconjchem.8b00283.

    • Detailed experimental procedure, and 1H and 13C NMR spectra, as well as X-ray data information (PDF)

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    Cited By

    This article is cited by 10 publications.

    1. Fayang Xie, Haolin Jiang, Xiangqian Jia, Jingyang Zhang, Zhu Zhu, Juanjuan Du, Yefeng Tang. Bridgehead Alkene-Enabled Strain-Driven Bioorthogonal Reaction. Organic Letters 2022, 24 (29) , 5304-5308. https://doi.org/10.1021/acs.orglett.2c01895
    2. Sheng Wang, Yuanyuan Li, Hongling Zhou, Li Wang, Rui Wang. Development of Biocompatible Ene-Ligation Enabled by Prenyl-Based β-Caryophyllene with Triazoline/Selectfluor under Physiological Conditions. The Journal of Organic Chemistry 2022, 87 (13) , 8648-8655. https://doi.org/10.1021/acs.joc.2c00841
    3. Pengbing Mi, Lirong He, Tanxiao Shen, Jing Zhi Sun, Hui Zhao. A Novel Fluorescent Skeleton from Disubstituted Thiochromenones via Nickel-Catalyzed Cycloaddition of Sulfobenzoic Anhydrides with Alkynes. Organic Letters 2019, 21 (16) , 6280-6284. https://doi.org/10.1021/acs.orglett.9b02161
    4. Si‐Cong Chen, Qi Zhu, Han Chen, Zijing Chen, Tuoping Luo. Pro‐aromaticity Enabled Dealkenylative Functionalizations via Photo‐Excitation and Oxidation. Chemistry – A European Journal 2023, 29 (27) https://doi.org/10.1002/chem.202203425
    5. Yulia V. Gyrdymova, Svetlana A. Rubtsova. Caryophyllene and caryophyllene oxide: a variety of chemical transformations and biological activities. Chemical Papers 2022, 76 (1) , 1-39. https://doi.org/10.1007/s11696-021-01865-8
    6. Andrew B. Lowe, Elena Dallerba. RAFT ‐Functional End Groups: Installation and Transformation. 2021, 753-804. https://doi.org/10.1002/9783527821358.ch16
    7. Fayang Xie, Xiangqian Jia, Zhu Zhu, Yunfei Wu, Haolin Jiang, Hongzhi Yang, Yu Cao, Rui Zhu, Bing Zhou, Juanjuan Du, Yefeng Tang. Chemical trigger-enabled bioconjugation reaction. Organic & Biomolecular Chemistry 2021, 19 (38) , 8343-8351. https://doi.org/10.1039/D1OB01177D
    8. Shiye Li, Lihan Shi, Li Zhang, Hongmei Huang, Yi Xiao, Liqiu Mao, Rong Tan, Zaihui Fu, Ningya Yu, Dulin Yin. Ionic liquid-mediated catalytic oxidation of β-caryophyllene by ultrathin 2D metal-organic framework nanosheets under 1 atm O2. Molecular Catalysis 2020, 496 , 111196. https://doi.org/10.1016/j.mcat.2020.111196
    9. Hongzhi Yang, Tianying Zeng, Shuang Xi, Shengkun Hu, Yunfei Wu, Yefeng Tang. Photoinduced, strain-promoted cycloadditions of trans -cycloheptenones and azides. Green Chemistry 2020, 22 (20) , 7023-7030. https://doi.org/10.1039/D0GC02347G
    10. Matteo Zanda, Raffaella Bucci, Nikki L. Sloan, Lydia Topping. Highly Strained Unsaturated Carbocycles. European Journal of Organic Chemistry 2020, 2020 (33) , 5278-5291. https://doi.org/10.1002/ejoc.202000512

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