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46 citations found for Yamane, T.
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crystallization papers
The crystallization and preliminary X-ray analysis of high-alkaline pectate lyase from Bacillus sp. have been performed. Native data have been collected to 1.5 Å using synchrotron X-rays.
research papers
The structure of a low molecular-weight pectate lyase was determined at 1.5 Å resolution. The structure is a β-helix domain motif.
research papers
crystallization papers
The crystallization and preliminary X-ray analysis of a mastoparan peptide isolated from the venom of the solitary wasp A. flavomarginatum micado is reported.
structural communications
The structure of ST0929 provides insight into the structural basis of the increase in the hydrolase side reaction that is observed for mutants in which a phenylalanine residue is replaced by a tyrosine residue in the subsite +1 tyrosine cluster of Sulfolobus sp.
short structural papers
short structural papers
short structural papers
abstracts
short structural papers
research papers
crystallization communications
The crystallization and preliminary X-ray diffraction studies of the Skp1-Fbg3 complex are reported. Crystallization by repeated microseeding using selected crystals as a source of microseeds is described.
PHYSICS | FELs
A method for determining the sample flow rate and concomitant light condition in time-resolved serial femtosecond crystallography is developed to analyze the intermediate-state structures of photosystem II.
abstracts
metal-organic compounds
research papers (organic compounds)
short communications
The crystal structures of D-amino acid amidase complexed with L-phenylalanine and with L-phenylalanine amide reveal three factors related to its D-stereospecificity.
diffraction structural biology
The catalytic mechanism of D-amino acid amidase from Ochrobactrum anthropi SV3 has been deduced.
abstracts
research papers
One of the main interests in the molecular biosciences is in understanding structure–function relations and X-ray crystallography plays a major role in this. ACORN can be used as a comprehensive and efficient phasing procedure for the determination of protein structures when atomic resolution data are available. An initial model can automatically be built by ARP/wARP followed by REFMAC for refinement. The α helices and β sheets occurring in many protein structures can be taken as starting fragments for structure solution in ACORN. ACORN, along with ARP/wARP followed by REFMAC, can be an ab initio method for solving protein structure for which data are better than 1.2 Å (atomic resolution). Attempts are here made in extending its applications to real data at 1.45 Å resolution and also to truncated data at 1.6 Å resolution. Two previously known structures, congerin II and alkaline cellulase N257, were resolved using the above approach. Automatic structure solution, phasing and refinement for real data at still lower resolutions for proteins of various complexities are being carried out. Data mining of the secondary structural features using PDB is being carried out for this new approach for `seed-phasing' to ACORN.