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Research Article
Open access
Published Online: 19 June 2008

Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

Publication: OMICS A Journal of Integrative Biology
Volume 12, Issue Number 2

Abstract

The methodologies used to generate genome and metagenome annotations are diverse and vary between groups and laboratories. Descriptions of the annotation process are helpful in interpreting genome annotation data. Some groups have produced Standard Operating Procedures (SOPs) that describe the annotation process, but standards are lacking for structure and content of these descriptions. In addition, there is no central repository to store and disseminate procedures and protocols for genome annotation. We highlight the importance of SOPs for genome annotation and endorse an online repository of SOPs.

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cover image OMICS: A Journal of Integrative Biology
OMICS A Journal of Integrative Biology
Volume 12Issue Number 2June 2008
Pages: 137 - 141
PubMed: 18416670

History

Published online: 19 June 2008
Published in print: June 2008
Published ahead of print: 16 April 2008

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Samuel V. Angiuoli
Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland.
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland.
Aaron Gussman
Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland.
William Klimke
National Center for Biotechnology Information, National Institutes of Health, Baltimore, Maryland.
Guy Cochrane
EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Dawn Field
Molecular Evolution & Bioinformatics Section, Mansfield Road, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.
George M. Garrity
Department of Microbiology and Molecular Genetics at Michigan State University, East Lansing, Michigan.
Chinnappa D. Kodira
The Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Nikos Kyrpides
Department of Energy, Joint Genome Institute, Walnut Creek, California.
Ramana Madupu
J. Craig Venter Institute, Rockville, Maryland.
Victor Markowitz
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California.
Tatiana Tatusova
National Center for Biotechnology Information, National Institutes of Health, Baltimore, Maryland.
Nick Thomson
The Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland.

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