Skip to main content
Log in

In search of the Kumamoto oyster Crassostrea sikamea (Amemiya, 1928) based on molecular markers: is the natural resource at stake?

  • Review Article
  • Published:
Fisheries Science Aims and scope Submit manuscript

Abstract

A cornerstone in conserving wildlife is to resolve taxonomic uncertainties over organisms so that conservationists can define the entity that should be conserved. This is the case for two closely related Crassostrea oysters inhabiting the Ariake Sea (Kyushu, Japan) in sympatry, the kumamoto oyster C. sikamea and Pacific oyster C. gigas, where molecular markers have shed light on their taxonomic separation and species diagnosis. In the past, there was a concern that Kumamoto oysters may be at risk of extinction. However, several field surveys equipped with species-diagnosis molecular markers have provided solid evidence that this perception is incorrect. Nevertheless, previous studies have sometimes given conflicting results, throwing us into confusion about the resource status. Research on natural Kumamoto oysters that the author hopes could help to enhance our understanding of the conservation of this invaluable oyster is reviewed here.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Notes

  1. The genus of cupped oyster was renamed from Ostrea to Crassostrea in 1955 according to a rule of the International Commission on Zoological Nomenclature [3].

  2. The term “Ariake-subendemic species” is used here to represent an animal showing vicariance (between the Ariake Sea and the continental coast), rather than in the sense of an animal that occurs in the Ariake Sea but is distributed to a minor degree on other Japanese seashores (cf. [38]).

References

  1. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge, p 617

    Google Scholar 

  2. Reece KS, Cordes JF, Stubbs JB, Hudson KL, Francis EA (2008) Molecular phylogenies help resolve taxonomic confusion with Asian Crassostrea oyster species. Mar Biol 153:709–721

    Article  Google Scholar 

  3. Banks MA, McGoldrick DJ, Borgeson W, Hedgecock D (1994) Gametic incompatibility and genetic divergence of Pacific and Kumamoto oysters, Crassostrea gigas and C. sikamea. Mar Biol 121:127–135

    Article  Google Scholar 

  4. Amemiya I (1928) Ecological studies of Japanese oysters, with special reference to the salinity of their habitats. J Coll Agric Univ Tokyo 9:333–382

    Google Scholar 

  5. Hatakeyama S (2006) Kaki raisan (Singing oyster’s praises). Bungeishunju, Tokyo, pp 172–189 (in Japanese)

    Google Scholar 

  6. Sou T (2008) Shikame-gaki yoshoku eno torikumi—Kumamoto oyster no hukkatsu (Aquaculture trials in Kumamoto oyster—the recovery of Kumamoto oyster). Kumamoto Suiken Center News 16:3 (in Japanese)

  7. Woelke CE (1955) Introduction of the Kumamoto oyster Ostrea (Crassostrea) gigas to the Pacific coast. Washington Dept Fisheries Res Papers 1:41–50

  8. Gordon DG, Blanton NE, Nosho TY (2001) Heaven on the half shell. West Winds Press, Portland, p 119

    Google Scholar 

  9. Robinson A (1992) Gonadal cycle of Crassostrea gigas kumamoto (Thunberg) in Yaquina Bay, Oregon and optimum conditions for broodstock oysters and larval culture. Aquaculture 106:89–97

    Article  Google Scholar 

  10. Chew KK (1990) Global bivalve shellfish introductions. World Aquac 21:9–22

    Google Scholar 

  11. Nakano H (2007) Kumamoto oyster no ohanashi (A piece of talk about Kumamoto oyster). Kumamoto Suiken Center News 15:9 (in Japanese)

    Google Scholar 

  12. Imai T, Sakai S (1961) Study of breeding the Japanese oyster, Crassostrea gigas. Tohoku J Agric Res 12:125–171

    Google Scholar 

  13. Camara MD, Davis JP, Sekino M, Hedgecock D, Li G, Langdon CJ, Evans S (2008) The Kumamoto oyster Crassostrea sikamea is neither rare nor threatened by hybridization in the northern Ariake Sea, Japan. J Shellfish Res 27:313–322

    Article  Google Scholar 

  14. Hedgecock D, Li G, Banks MA, Kain Z (1999) Occurrence of the Kumamoto oyster Crassostrea sikamea in the Ariake Sea, Japan. Mar Biol 133:65–68

    Article  Google Scholar 

  15. Anonymous (2004) Red list Kumamoto 2004. Kumamoto Prefecture, pp 24 (in Japanese)

  16. Numachi K (1971) Biological research on the oyster. In: Imai T (ed) Aquaculture in shallow seas: progress in shallow sea culture. Koseisha Koseikaku, Tokyo, pp 82–105 (in Japanese)

    Google Scholar 

  17. Hedgecock D, Banks MA, McGoldrick DJ (1993) The status of the Kumamoto oyster Crassostrea sikamea (Amemiya 1928) in US commercial brood stocks. J Shellfish Res 12:215–221

    Google Scholar 

  18. Ahmed M (1975) Speciation in living oysters. Adv Mar Biol 13:375–397

    Google Scholar 

  19. Ahmed M (1973) Cytogenetics of oysters. Cytologia 38:337–346

    PubMed  CAS  Google Scholar 

  20. Buroker NE, Hershberger WK, Chew KK (1979) Population genetics of the family Ostreidae. I. Intraspecific studies of Crassostrea gigas and Saccostrea commercialis. Mar Biol 54:157–169

    Article  Google Scholar 

  21. Nei M (1972) Genetic distance between populations. Am Nat 106:283–292

    Article  Google Scholar 

  22. Fujio Y (1979) Enzyme polymorphism and population structure of the Pacific oyster, Crassostrea gigas. Tohoku J Agric Res 30:32–42

    CAS  Google Scholar 

  23. Ozaki H, Fujio Y (1985) Genetic differentiation in geographical populations of the Pacific oyster (Crassostrea gigas) around Japan. Tohoku J Agric Res 36:49–61

    Google Scholar 

  24. Banks MA, Hedgecock D (1993) Discrimination between closely related Pacific oyster species (Crassostrea) via mitochondrial DNA sequences coding for large subunit rRNA. Mol Mar Biol Biotechnol 2:129–136

    PubMed  CAS  Google Scholar 

  25. Cordes JF, Stubbs JB, Reece KS (2005) Phylogenetics and species identification of Crassostrea oysters based on sequences and PCR-RFLP analyses of ITS-1 and COI markers. J Shellfish Res 24:647

    Google Scholar 

  26. Wang H, Guo X (2008) Identification of Crassostrea ariakensis and related oysters by multiplex species-specific PCR. J Shellfish Res 27:481–487

    Article  Google Scholar 

  27. Huvet A, Boudry P, Ohresser M, Delsert C, Bonhomme F (2000) Variable microsatellites in the Pacific oyster Crassostrea gigas and other cupped oyster species. Anim Genet 31:71–72

    Article  PubMed  CAS  Google Scholar 

  28. Li G, Hubert S, Bucklin K, Ribes V, Hedgecock D (2003) Characterization of 79 microsatellite markers in the Pacific oyster Crassostrea gigas. Mol Ecol Notes 3:228–232

    Article  CAS  Google Scholar 

  29. Sekino M, Hamaguchi M, Aranishi F, Okoshi K (2003) Development of novel microsatellite DNA markers from the Pacific oyster Crassostrea gigas. Mar Biotechnol 5:227–233

    Article  PubMed  CAS  Google Scholar 

  30. Yu H, Li Q (2008) Exploiting EST databases for the development and characterization of EST-SSRs in the Pacific oyster (Crassostrea gigas). J Hered 99:208–233

    Article  PubMed  CAS  Google Scholar 

  31. Hedgecock D, Li G, Hubert S, Bucklin K, Ribes V (2004) Widespread null alleles and poor cross-species amplification of microsatellite DNA loci cloned from the Pacific oyster, Crassostrea gigas. J Shellfish Res 23:379–385

    Google Scholar 

  32. Huvet A, Herpin A, Dégremont L, Labreuche Y, Samain J-F, Cunningham C (2004) The identification of genes from the Pacific oyster Crassostrea gigas that are differentially expressed in progeny exhibiting opposed susceptibility to summer mortality. Gene 343:211–220

    Article  PubMed  CAS  Google Scholar 

  33. Tanguy A, Bierne N, Saavedra C, Pina B, Báchere E, Kube M, Bazin E, Bonhomme F, Boudry P, Boulo V, Boutet I, Cancela L, Dossat C, Favrel P, Huvet A, Jarque S, Jollivet D, Klages S, Lapégue S, Leite R, Moal J, Moraga D, Reinhardt R, Samain J-F, Zouros E, Canario A (2008) Increasing genomic information in bivalves through new EST collections in four species: development of new genetic markers for environmental studies and genome evolution. Gene 408:27–36

    Article  PubMed  CAS  Google Scholar 

  34. Usuki H (2002) Evaluation of characteristics and preservation of Pacific oyster, Crassostrea gigas, in view of the genetic resources. Bull Fish Res Agency 4:40–104 (in Japanese with English abstract)

    Google Scholar 

  35. Lannan JE, Robinson A, Breese WP (1980) Broodstock management of Crassostrea gigas. II. Broodstock conditioning to maximize larval survival. Aquaculture 21:337–345

    Article  Google Scholar 

  36. Cornuet JM, Luikart G (1996) Description and evaluation of two tests for detecting recent bottlenecks. Genetics 144:2001–2014

    PubMed  CAS  Google Scholar 

  37. Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10:305–318

    Article  PubMed  CAS  Google Scholar 

  38. Satou M, Takita T (2000) Ariake-kai no seibutsu-sou to kankyou (Biota and environment in Ariake Sea). In: Satou M (ed) Life in Ariake Sea: biodiversity in tidal flats and estuaries. Kaiyusha, Tokyo, pp 10–35 (in Japanese)

  39. Tanaka M (2007) Relict estuarine ecosystem isolated from the continental coastal waters. Aquabiology 29:3–9 (in Japanese with English abstract)

    Google Scholar 

  40. Satou S (2000) Nimai-gai: tokuni Isahaya-wan ni tsuite (Bivalves: focusing on those distributed in Isahaya Bay). In: Satou M (ed) Life in Ariake Sea: biodiversity in tidal flats and estuaries. Kaiyusha, Tokyo, pp 150–183 (in Japanese)

  41. Guo X, Ford SE, Zhang F (1999) Molluscan aquaculture in China. J Shellfish Res 18:19–31

    Google Scholar 

  42. Yoon HS, Jung HT, Choi SD (2008) Suminoe oyster (Crassostrea ariakensis) culture in Korea. J Shellfish Res 27:505–508

    Article  Google Scholar 

  43. Shimoyama S (2000) Ariake-kai no chishi to tokusanshu no seiritsu (Geological history of Ariake Sea and foundation of Ariake-endemic species). In: Satou M (ed) Life in Ariake Sea: biodiversity in tidal flats and estuaries. Kaiyusha, Tokyo, pp 37–48 (in Japanese)

  44. Wang P (1999) Response of Western Pacific marginal seas to glacial cycles: paleoceanographic and sedimentological features. Mar Geol 156:5–39

    Article  Google Scholar 

  45. Ogg JG, Ogg G, Gradstein FM (2008) The concise geologic time scale. Cambridge University Press, Cambridge, p 184

    Google Scholar 

  46. Lambeck K, Esat TM, Potter E-K (2002) Links between climate and sea levels for the past three million years. Nature 419:199–206

    Article  PubMed  CAS  Google Scholar 

  47. Emery KO, Niino H, Sullivan B (1971) Post-Pleistocene levels of East China Sea. In: Trekian KK (ed) Late Cenozoic glacial ages. Yale University Press, New Haven, pp 381–390

    Google Scholar 

  48. Wang J, Wang P (1980) Relationship between sea-level changes and climatic fluctuations in East China since late Pleistocene. Acta Geogr Sin 35:299–312 (in Chinese with English abstract)

    Google Scholar 

  49. Xu X, Oda M (1999) Surface-water evolution of the eastern East China Sea during the last 36,000 years. Mar Geol 156:285–304

    Google Scholar 

  50. Aoyama D, Kinoshita I, Fujita S (2007) The function of the inner estuary as nursery grounds for fishes in Ariake Bay: differentiation between the endemic and common species. Aquabiology 29:16–25 (in Japanese with English abstract)

    Google Scholar 

  51. Yagi Y, Kinoshita I, Sashida M, Fujita S, Kimata S (2007) Comparison of larvae and juveniles fauna among the estuaries in Ariake Bay. Aquabiology 29:26–32 (in Japanese with English abstract)

    Google Scholar 

  52. Kinoshita I (2007) Reviewing importance as nursery ground for fishes of Isahaya Bay. Aquabiology 29:69–74 (in Japanese with English abstract)

    Google Scholar 

  53. Hewitt GM (2000) The genetic legacy of the quaternary ice ages. Nature 405:907–913

    Article  PubMed  CAS  Google Scholar 

  54. Mayr E (1963) Animal species and evolution. Harvard University Press, Cambridge, p 811

    Google Scholar 

  55. Inaba A, Torigoe K (2004) Oysters in the world, part 2: systematic description of the recent oysters. Bull Nishinomiya Shell Mus 3:15–16 (in Japanese)

    Google Scholar 

  56. Soulé ME (1986) Conservation biology: the society of scarcity and diversity. Sinauer Associates, Sunderland, p 584

  57. Primack RB (1995) A primer of conservation biology. Sinauer Associates, Sunderland, p 246

    Google Scholar 

  58. Rhymer JM, Simberloff D (1996) Extinction by hybridization and introgression. Annu Rev Ecol Syst 27:83–109

    Article  Google Scholar 

  59. Lande R (1999) Extinction risks from anthropogenic, ecological, and genetic factors. In: Landweber LF, Dobson AP (eds) Genetics and the extinction of species. Princeton University Press, Princeton, pp 1–22

    Google Scholar 

  60. Azuma M, Kinoshita I (2007) Toward the revival from the “Ariake Sea disaster”. Aquabiology 29:75–83 (in Japanese with English abstract)

    Google Scholar 

  61. Simberloff D (1988) The contribution of population and community biology to conservation science. Annu Rev Ecol Syst 19:709–721

    Article  Google Scholar 

  62. Schwartz MK, Tallmon DA, Luikart G (1998) Review of DNA-based census and effective population size estimators. Anim Conserv 1:293–299

    Article  Google Scholar 

Download references

Acknowledgments

The author thank Drs. Mark D. Camara, Christopher J. Langdon, and Dennis Hedgecock for reading the earlier draft of the manuscript. The photograph of US broodstocks of Kumamoto and Pacific oysters (Fig. 2b) is provided courtesy of Drs. C. J. Langdon and Sanford Evans. Many suggestions and criticisms provided by anonymous reviewers helped to improve the manuscript. This article is a contribution from the Fisheries Research Agency of Japan (TNFRI-B115).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Masashi Sekino.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sekino, M. In search of the Kumamoto oyster Crassostrea sikamea (Amemiya, 1928) based on molecular markers: is the natural resource at stake?. Fish Sci 75, 819–831 (2009). https://doi.org/10.1007/s12562-009-0100-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12562-009-0100-6

Keywords

Navigation