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Articles| Volume 23, ISSUE 6, P683-695, June 2023

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Viral burden rebound in hospitalised patients with COVID-19 receiving oral antivirals in Hong Kong: a population-wide retrospective cohort study

  • Carlos K H Wong
    Correspondence
    Correspondence to: Dr Carlos K H Wong, Department of Pharmacology and Pharmacy, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
    Affiliations
    Department of Pharmacology and Pharmacy, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China

    Department of Family Medicine and Primary Care, School of Clinical Medicine, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China

    Laboratory of Data Discovery for Health, Hong Kong Science and Technology Park, Shatin, Hong Kong Special Administrative Region, China
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  • Kristy T K Lau
    Affiliations
    Department of Pharmacology and Pharmacy, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
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  • Ivan C H Au
    Affiliations
    Department of Pharmacology and Pharmacy, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
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  • Eric H Y Lau
    Affiliations
    Laboratory of Data Discovery for Health, Hong Kong Science and Technology Park, Shatin, Hong Kong Special Administrative Region, China

    WHO Collaborating Centre for Infectious Disease Epidemiology and Control, School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
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  • Leo L M Poon
    Affiliations
    School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China

    HKU-Pasteur Research Pole, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China

    Centre for Immunology and Infection, Hong Kong Science and Technology Park, Shatin, Hong Kong Special Administrative Region, China
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  • Ivan F N Hung
    Affiliations
    Infectious Diseases Division, Department of Medicine, School of Clinical Medicine, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
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  • Benjamin J Cowling
    Affiliations
    Laboratory of Data Discovery for Health, Hong Kong Science and Technology Park, Shatin, Hong Kong Special Administrative Region, China

    WHO Collaborating Centre for Infectious Disease Epidemiology and Control, School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
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  • Gabriel M Leung
    Affiliations
    Laboratory of Data Discovery for Health, Hong Kong Science and Technology Park, Shatin, Hong Kong Special Administrative Region, China

    WHO Collaborating Centre for Infectious Disease Epidemiology and Control, School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China
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Published:February 13, 2023DOI:https://doi.org/10.1016/S1473-3099(22)00873-8

      Summary

      Background

      Viral rebound after nirmatrelvir–ritonavir treatment has implications for the clinical management and isolation of patients with COVID-19. We evaluated an unselected, population-wide cohort to identify the incidence of viral burden rebound and associated risk factors and clinical outcomes.

      Methods

      We did a retrospective cohort study of hospitalised patients with a confirmed diagnosis of COVID-19 in Hong Kong, China, for an observation period from Feb 26 to July 3, 2022 (during the omicron BA.2.2 variant wave). Adult patients (age ≥18 years) admitted 3 days before or after a positive COVID-19 test were selected from medical records held by the Hospital Authority of Hong Kong. We included patients with non-oxygen-dependent COVID-19 at baseline receiving either molnupiravir (800 mg twice a day for 5 days), nirmatrelvir–ritonavir (nirmatrelvir 300 mg with ritonavir 100 mg twice a day for 5 days), or no oral antiviral treatment (control group). Viral burden rebound was defined as a reduction in cycle threshold (Ct) value (≥3) on quantitative RT-PCR test between two consecutive measurements, with such decrease sustained in an immediately subsequent Ct measurement (for those patients with ≥3 Ct measurements). Logistic regression models were used to identify prognostic factors for viral burden rebound, and to assess associations between viral burden rebound and a composite clinical outcome of mortality, intensive care unit admission, and invasive mechanical ventilation initiation, stratified by treatment group.

      Findings

      We included 4592 hospitalised patients with non-oxygen-dependent COVID-19 (1998 [43·5%] women and 2594 [56·5%] men). During the omicron BA.2.2 wave, viral burden rebound occurred in 16 of 242 patients (6·6% [95% CI 4·1–10·5]) receiving nirmatrelvir–ritonavir, 27 of 563 (4·8% [3·3–6·9]) receiving molnupiravir, and 170 of 3787 (4·5% [3·9–5·2]) in the control group. The incidence of viral burden rebound did not differ significantly across the three groups. Immunocompromised status was associated with increased odds of viral burden rebound, regardless of antiviral treatment (nirmatrelvir–ritonavir: odds ratio [OR] 7·37 [95% CI 2·56–21·26], p=0·0002; molnupiravir: 3·05 [1·28–7·25], p=0·012; control: 2·21 [1·50–3·27], p<0·0001). Among patients receiving nirmatrelvir–ritonavir, the odds of viral burden rebound were higher in those aged 18–65 years (vs >65 years; 3·09 [1·00–9·53], p=0·050), those with high comorbidity burden (score >6 on the Charlson Comorbidity Index; 6·02 [2·09–17·38], p=0·0009), and those concomitantly taking corticosteroids (7·51 [1·67–33·82], p=0·0086); whereas the odds were lower in those who were not fully vaccinated (0·16 [0·04–0·67], p=0·012). In patients receiving molnupiravir, those aged 18–65 years (2·68 [1·09–6·58], p=0·032) or on concomitant corticosteroids (3·11 [1·23–7·82], p=0·016) had increased odds of viral burden rebound. We found no association between viral burden rebound and occurrence of the composite clinical outcome from day 5 of follow-up (nirmatrelvir–ritonavir: adjusted OR 1·90 [0·48–7·59], p=0·36; molnupiravir: 1·05 [0·39–2·84], p=0·92; control: 1·27 [0·89–1·80], p=0·18).

      Interpretation

      Viral burden rebound rates are similar between patients with antiviral treatment and those without. Importantly, viral burden rebound was not associated with adverse clinical outcomes.

      Funding

      Health and Medical Research Fund, Health Bureau, The Government of the Hong Kong Special Administrative Region, China.

      Translation

      For the Chinese translation of the abstract see Supplementary Materials section.

      Introduction

      During the COVID-19 global pandemic, multiple drugs have been repurposed or developed for the treatment of SARS-CoV-2 infection. Ritonavir-boosted nirmatrelvir (nirmatrelvir–ritonavir), which targets the main protease (Mpro) of SARS-CoV-2, and molnupiravir, which targets the viral RNA-dependent RNA polymerase, are two oral antiviral drugs that ultimately inhibit viral replication.
      • Hammond J
      • Leister-Tebbe H
      • Gardner A
      • et al.
      Oral nirmatrelvir for high-risk, nonhospitalized adults with COVID-19.
      • Jayk Bernal A
      • Gomes da Silva MM
      • Musungaie DB
      • et al.
      Molnupiravir for oral treatment of COVID-19 in nonhospitalized patients.
      Current guidelines recommend early use (within 5 days of symptom onset) of these oral antivirals in patients with COVID-19 who do not require hospitalisation or supplemental oxygen but are at high risk of progression to severe disease.
      National Institutes of Health
      Therapeutic management of nonhospitalized adults with COVID-19.
      WHO
      Therapeutics and COVID-19: living guideline, 16 September 2022.
      When accessible and clinically appropriate, the use of nirmatrelvir–ritonavir should be prioritised over molnupiravir, given the higher efficacy of nirmatrelvir–ritonavir in preventing hospitalisation or death when compared with placebo (relative risk reduction of 88% with nirmatrelvir–ritonavir vs 30% with molnupiravir).
      • Hammond J
      • Leister-Tebbe H
      • Gardner A
      • et al.
      Oral nirmatrelvir for high-risk, nonhospitalized adults with COVID-19.
      • Jayk Bernal A
      • Gomes da Silva MM
      • Musungaie DB
      • et al.
      Molnupiravir for oral treatment of COVID-19 in nonhospitalized patients.
      National Institutes of Health
      Therapeutic management of nonhospitalized adults with COVID-19.
      WHO
      Therapeutics and COVID-19: living guideline, 16 September 2022.
      Recent observational studies confirmed the clinical benefits of nirmatrelvir–ritonavir during the omicron wave, especially among older patients and patients with pre-existing comorbidities, immunosuppression, or obesity.
      • Arbel R
      • Wolff Sagy Y
      • Hoshen M
      • et al.
      Nirmatrelvir use and severe COVID-19 outcomes during the omicron surge.
      • Najjar-Debbiny R
      • Gronich N
      • Weber G
      • et al.
      Effectiveness of paxlovid in reducing severe COVID-19 and mortality in high risk patients.
      • Dryden-Peterson S
      • Kim A
      • Kim AY
      • et al.
      Nirmatrelvir plus ritonavir for early COVID-19 in a large US health system: a population-based cohort study.
      Additionally, analyses in clinical trials have identified a reduced need for respiratory interventions, greater decrease in SARS-CoV-2 RNA load, and faster viral RNA clearance among patients taking molnupiravir versus control groups.
      • Fatima M
      • Azeem S
      • Saeed J
      • Shahid A
      • Cheema HA
      Efficacy and safety of molnupiravir for COVID-19 patients.
      • Johnson MG
      • Puenpatom A
      • Moncada PA
      • et al.
      Effect of molnupiravir on biomarkers, respiratory interventions, and medical services in COVID-19: a randomized, placebo-controlled trial.
      • Zou R
      • Peng L
      • Shu D
      • et al.
      Antiviral efficacy and safety of molnupiravir against omicron variant infection: a randomized controlled clinical trial.
      Research in context
      Evidence before this study
      The medical and research community are actively exploring the use of oral antivirals in patients with COVID-19 to lower their risks of hospitalisation and death, and to reduce burden on health-care systems. However, there are increasing numbers of anecdotal reports of viral rebound following treatment with nirmatrelvir–ritonavir. We searched Scopus and PubMed for studies published from database inception until Oct 21, 2022, using the terms “SARS-CoV-2 OR COVID-19” AND “molnupiravir OR Lagevrio OR EIDD-2801” OR “nirmatrelvir OR Paxlovid OR PF-07321332” AND “rebound”, without language restrictions. Major studies examining COVID-19 rebound or viral load rebound have been case study reports and observational cohort studies. A standard definition of COVID-19 rebound remains to be established. Data from post-marketing surveillance of the oral antivirals being used in clinical practice (nirmatrelvir–ritonavir and molnupiravir) are needed, to identify the incidence of COVID-19 rebound with and without oral antiviral use, to illustrate changes in viral load with time and any association with clinical status, and to identify potential risk factors related to COVID-19 rebound. As yet, population-wide evidence on viral burden rebound in patients receiving and not receiving oral antivirals in clinical practice is absent.
      Added value of this study
      To the best of our knowledge, this study is the one of the first real-world studies to explore viral burden rebound in patients receiving and not receiving oral antivirals during a pandemic wave dominated by the SARS-CoV-2 omicron BA.2.2 variant. We conducted a territory-wide, retrospective cohort study to identify the incidence of viral burden rebound and associated risk factors, and the association between viral burden rebound and risks of clinical outcomes in Hong Kong. Viral burden rebound occurred in 6·6% of patients receiving nirmatrelvir–ritonavir, 4·8% of patients receiving molnupiravir, and 4·5% of control patients. Immunocompromised status was associated with increased odds of viral burden rebound, regardless of whether antiviral treatment was used or the type of treatment. Among patients receiving nirmatrelvir–ritonavir, the odds of rebound were higher in those aged 18–65 years (vs >65 years), those with high comorbidity burden, and those concomitantly taking corticosteroids, while the odds were lower in those who had not been fully vaccinated. Patients taking molnupiravir who were aged 18–65 years or on concomitant corticosteroids had increased odds of rebound. We found no association between viral burden rebound and risk of a composite clinical outcome (mortality, intensive care unit admission, and initiation of invasive mechanical ventilation) after the end of standard treatment.
      Implications of all the available evidence
      Our cohort study indicated that viral burden rebound was not a common event, although it particularly occurred among patients who were immunocompromised or receiving concomitant corticosteroids. Incidence of viral burden rebound was similar with and without antiviral treatment. Viral burden rebound did not appear to be associated with adverse serious clinical outcomes. Further research is needed to establish a standard definition of COVID-19 rebound for comparison across studies, and to identify the underlying mechanism, and possible variation by timing, dosage, and duration of antiviral therapy.
      Although nirmatrelvir–ritonavir is increasingly prescribed to ambulatory patients with mild-to-moderate COVID-19 in the community, many case reports have described symptom recurrence or re-positive results on RT-PCR or viral antigen test shortly after initial recovery or a negative test after the standard 5-day treatment course.
      Centers for Disease Control and Prevention
      CDC Health Advisory. COVID-19 rebound after paxlovid treatment.
      On May 24, 2022, the US Centers for Disease Control and Prevention released a health advisory in response to increasing concerns, recognising that such COVID-19 rebound in which viral load resurges could occur independently of nirmatrelvir–ritonavir use; and given that most cases of viral rebound have been in patients with mild illness, without necessitating any additional treatment, the authority continues to recommend early initiation of nirmatrelvir–ritonavir for patients at high risk of severe COVID-19.
      Centers for Disease Control and Prevention
      CDC Health Advisory. COVID-19 rebound after paxlovid treatment.
      Over a range of 8–19 days after the initial onset of COVID-19, or a median of 4–9 days after completing nirmatrelvir–ritonavir treatment, reported cases of COVID-19 rebound were characterised by the recurrence or worsening of symptoms previously resolved or improved, re-positive RT-PCR or viral antigen tests that had previously turned negative, detectable or even an increase in viral load, and culturable virus indicative of possible infectiousness.
      • Boucau J
      • Uddin R
      • Marino C
      • et al.
      Characterization of virologic rebound following nirmatrelvir–ritonavir treatment for coronavirus disease 2019 (COVID-19).
      • Carlin AF
      • Clark AE
      • Chaillon A
      • et al.
      Virologic and immunologic characterization of COVID-19 recrudescence after nirmatrelvir/ritonavir treatment.
      • Charness ME
      • Gupta K
      • Stack G
      • et al.
      Rebound of SARS-CoV-2 infection after nirmatrelvir–ritonavir treatment.
      • Coulson JM
      • Adams A
      • Gray LA
      • Evans A
      COVID-19 “rebound” associated with nirmatrelvir/ritonavir pre-hospital therapy.
      • Epling BP
      • Rocco JM
      • Boswell KLL
      • et al.
      Clinical, virologic, and immunologic evaluation of symptomatic coronavirus disease 2019 rebound following nirmatrelvir/ritonavir treatment.
      • Ranganath N
      • O'Horo JC
      • Challener DW
      • et al.
      Rebound phenomenon after nirmatrelvir/ritonavir treatment of coronavirus disease-2019 (COVID-19) in high-risk persons.
      Evidence of viral rebound after molnupiravir treatment is fairly scarce, although suggests potentially similar incidences of COVID-19 rebound between molnupiravir and nirmatrelvir–ritonavir.
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      Nevertheless, a standard definition of COVID-19 rebound remains to be established. Further data from post-marketing surveillance of both oral antivirals (nirmatrelvir–ritonavir and molnupiravir) in clinical use are needed, to establish the incidence of COVID-19 rebound with and without oral antiviral use, to illustrate the changes in viral load with time and any association with clinical status, and to identify potential risk factors related to COVID-19 rebound. This observational study aimed to estimate the incidence of viral burden rebound in relation to changes in cycle threshold (Ct) value measurements among patients receiving and not receiving oral antivirals. We also sought to identify potential risk factors of viral burden rebound and examine the clinical outcomes associated with such rebound.

      Methods

      Study design

      In this population-wide retrospective cohort study, we assessed viral burden rebound in hospitalised adult patients (age ≥18 years) with non-oxygen-dependent COVID-19 in public hospitals in Hong Kong, China, for an observation period between Feb 26, 2022 (the date when oral antivirals were first available for use in Hong Kong), and July 3, 2022, during the omicron BA.2.2 variant-dominant period.
      • Chen L-L
      • Abdullah SMU
      • Chan W-M
      • et al.
      Contribution of low population immunity to the severe omicron BA.2 outbreak in Hong Kong.
      Previous studies have assessed viral load rebound, on the basis of viral load measurements (ie, viral copies per mL). Here, we defined viral burden rebound on the basis of Ct values, adapted from previous studies.
      • Wong CKH
      • Au ICH
      • Lau KTK
      • Lau EHY
      • Cowling BJ
      • Leung GM
      Real-world effectiveness of early molnupiravir or nirmatrelvir–ritonavir in hospitalised patients with COVID-19 without supplemental oxygen requirement on admission during Hong Kong's omicron BA.2 wave: a retrospective cohort study.
      • Pouwels KB
      • Pritchard E
      • Matthews PC
      • et al.
      Effect of delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK.
      The study protocol is available in appendix 2 (pp 26–30). This study was approved by the institutional review board of The University of Hong Kong and Hospital Authority Hong Kong West Cluster (reference number UW 20–493).

      Data source and patients

      COVID-19 cases were identified from the eSARS data of the Centre for Health Protection, Department of Health of Hong Kong Special Administrative Region. Electronic medical records of hospitalised patients with a confirmed diagnosis of COVID-19 were retrieved from the Hospital Authority of Hong Kong, and included demographic information, disease diagnoses, drug prescriptions, laboratory tests, hospital admission date, and inpatient procedures. Names of hospitals were not shared to maintain patient anonymity. The Hospital Authority data are linked by the Department of Health to their vaccination records with use of unique identification numbers. The linked database hosted by the Hospital Authority has been widely used for studies to evaluate the effectiveness of vaccine and drug treatments for COVID-19.
      • Wong CKH
      • Au ICH
      • Lau KTK
      • Lau EHY
      • Cowling BJ
      • Leung GM
      Real-world effectiveness of early molnupiravir or nirmatrelvir–ritonavir in hospitalised patients with COVID-19 without supplemental oxygen requirement on admission during Hong Kong's omicron BA.2 wave: a retrospective cohort study.
      • McMenamin ME
      • Nealon J
      • Lin Y
      • et al.
      Vaccine effectiveness of one, two, and three doses of BNT162b2 and CoronaVac against COVID-19 in Hong Kong: a population-based observational study.
      • Wong CKH
      • Wan EYF
      • Luo S
      • et al.
      Clinical outcomes of different therapeutic options for COVID-19 in two Chinese case cohorts: a propensity-score analysis.
      • Wong CKH
      • Au ICH
      • Lau KTK
      • Lau EHY
      • Cowling BJ
      • Leung GM
      Real-world effectiveness of molnupiravir and nirmatrelvir plus ritonavir against mortality, hospitalisation, and in-hospital outcomes among community-dwelling, ambulatory patients with confirmed SARS-CoV-2 infection during the omicron wave in Hong Kong: an observational study.
      Given the extraordinary nature of the COVID-19 pandemic, individual patient-informed consent was not required for this retrospective cohort study using anonymised data.
      We included patients receiving either molnupiravir (800 mg twice a day for 5 days) or nirmatrelvir–ritonavir (nirmatrelvir 300 mg with ritonavir 100 mg twice a day for 5 days) during the observation period. Completion of the 5-day regimen was not a prerequisite for study inclusion. As all public hospitals in Hong Kong are centrally managed under the Hospital Authority, oral antivirals were prescribed to patients with COVID-19 as clinically appropriate on the basis of the same set of drug treatment guidelines,
      Hospital Authority Central Committee on Infectious Diseases and Emergency Response
      Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.5.
      and both oral antivirals were equally accessible across all public hospitals during the study period (since Feb 26, 2022, for molnupiravir, and since March 16, 2022, for nirmatrelvir–ritonavir). According to the Hospital Authority internal clinical management guidelines for COVID-19,
      Hospital Authority Central Committee on Infectious Diseases and Emergency Response
      Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.5.
      patients with mild symptoms, at risk of progressing to severe disease (ie, diabetes, obesity with a body-mass index ≥30 kg/m2, age ≥60 years, immunocompromised state, underlying chronic illnesses, or not fully vaccinated), and at an early stage of disease (within 5 days of symptom onset) were recommended to receive molnupiravir or nirmatrelvir–ritonavir. Later versions (since March 21, 2022, past the wave peak of the omicron wave in early March, 2022) of the guidelines also specified that nirmatrelvir–ritonavir should be preferentially administered over molnupiravir, unless the patient was on any concomitant medication contraindicated for nirmatrelvir–ritonavir.
      Hospital Authority Central Committee on Infectious Diseases and Emergency Response
      Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.12.
      Control patients were selected from the cohort of hospitalised patients with non-oxygen-dependent COVID-19 who did not receive oral antivirals (molnupiravir or nirmatrelvir–ritonavir) during the observation period.
      Patients were eligible for inclusion if they had been admitted to hospital within 3 days after their first positive COVID-19 test on quantitative RT-PCR (RT-qPCR) or rapid antigen test, or if they tested positive within 3 days after their admission date (RT-qPCR or rapid antigen test), so as to include patients who were likely to have been admitted to hospital due to SARS-CoV-2 infection. Confirmation of a first-positive test was based on patient-self report or government records. Although not an inclusion requirement, all patients included in our cohort had a Ct value on admission, having done an RT-qPCR test within 3 days before or after admission. We excluded patients who were admitted to hospital before Feb 26, 2022 (the date of first molnupiravir prescription) or after June 26, 2022 (ie, with less than 1 week of follow-up), those aged younger than 18 years, those who received both molnupiravir and nirmatrelvir–ritonavir, and those receiving supplemental oxygen or invasive or non-invasive mechanical ventilation at the start of follow-up (index date). Among patients receiving antiviral treatment, we excluded those without at least one Ct value measurement from real-time RT-qPCR before or during antiviral treatment and at least one Ct value measurement after the end of antiviral treatment. Control patients without a Ct value measurement more than 5 days after the first measurement were also excluded.

      Procedures

      Follow-up started from the index date (day 0), defined as the date of first symptom onset, first positive rapid antigen test or RT-qPCR test, or initiation of molnupiravir or nirmatrelvir–ritonavir, whichever was the earliest. Patients were observed from the index date until registered death, the occurrence of clinical outcome events, or the end of the observation period (July 3, 2022), whichever occurred first.
      Baseline data collected from electronic medical records included age, sex, Charlson Comorbidity Index (CCI), immunocompromised status, case classification (imported cases vs local cases), COVID-19 vaccination status, concomitant treatment initiated on the day of admission (remdesivir, antibiotics, dexamethasone and other systemic steroids, interferon-β-1b, baricitinib, and tocilizumab), and Ct value on admission. Immunocompromised patients were those with primary immunodeficiency or on active immunosuppressive treatment at baseline or in the past 12 months, with immunosuppressive treatments defined as medications listed under the British National Formulary Chapter 8 (Malignant Disease and Immunosuppression). Fully vaccinated status was defined as having received at least two doses of BNT162b2 (Comirnaty, Pfizer-BioNTech) or three doses of CoronaVac (Sinovac Biotech), and being at least 14 days since the last dose at baseline or the index date.
      • McMenamin ME
      • Nealon J
      • Lin Y
      • et al.
      Vaccine effectiveness of one, two, and three doses of BNT162b2 and CoronaVac against COVID-19 in Hong Kong: a population-based observational study.
      Imported cases were identified among inbound travellers from mandatory RT-qPCR tests conducted upon arrival and during quarantine. Remdesivir plus dexamethasone were indicated when hospitalised patients had moderate symptoms requiring supplemental oxygen, or moderate-to-severe symptoms requiring oxygen through a high-flow device or non-invasive ventilation.
      Hospital Authority Central Committee on Infectious Diseases and Emergency Response
      Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.5.
      Hospital Authority Central Committee on Infectious Diseases and Emergency Response
      Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.12.
      Viral burden rebound was defined as a reduction in observed Ct value larger than or equal to 3 between two consecutive measurements, with this decrease sustained in at least the immediately subsequent Ct measurement (for patients with ≥3 Ct measurements), as follows: (∆Ct=Ct[measurement 1] – Ct[measurement 2] ≥3 and ∆Ct=Ct[measurement 1] – Ct[measurement 3] ≥3). Having three or more Ct measurements was not a prerequisite to define viral burden rebound. The Ct values were provided by the SARS-CoV-2 RT-qPCR assays performed in clinical settings of the Hospital Authority. Ct values were used as a proxy of viral burden, given that they are inversely correlated with viral load (ie, a lower Ct value implies a higher viral burden). A decrease in Ct value by approximately 3 units was considered a rough estimate of an eight-times increase in viral RNA, a surrogate marker of viral load.
      • Zou L
      • Ruan F
      • Huang M
      • et al.
      SARS-CoV-2 viral load in upper respiratory specimens of infected patients.
      When the RT-qPCR result was negative, Ct value was not available and was imputed with a value of 40, which was treated as the detection limit of the assay.
      • Tsui ELH
      • Lui CSM
      • Woo PPS
      • et al.
      Development of a data-driven COVID-19 prognostication tool to inform triage and step-down care for hospitalised patients in Hong Kong: a population-based cohort study.

      Outcomes

      We compared the incidence of viral burden rebound across the groups, and explored potential predictors of viral burden rebound. We selected risk factors for progression to severe COVID-19 as potential predictors for viral burden rebound, including age (≤65 years or >65 years), sex, CCI (≤6 or >6), vaccination status, use of concomitant corticosteroids, and immunocompromised status.
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      We also studied the association of a composite clinical outcome of mortality, initiation of invasive mechanical ventilation, and intensive care unit (ICU) admission with viral burden rebound, from day 5 of follow-up to the end of follow-up. We also assessed separately the association between viral burden rebound and mortality, and between viral burden rebound and ICU admission or initiation of invasive mechanical ventilation. Patients with a prespecified clinical outcome during the first 4 days from the index date were excluded from analysis.

      Statistical analysis

      We estimated daily Ct value with a generalised-additive mixed-effects model. The Ct value trajectory was assumed to be identical for all individuals (common slope), whereas the Ct values on the index date were assumed to vary among individuals (random intercept).
      • Lau LLH
      • Ip DKM
      • Nishiura H
      • et al.
      Heterogeneity in viral shedding among individuals with medically attended influenza A virus infection.
      The Laird-Ware form of the linear mixed model was applied to the log of the Ct value. The Akaike information criterion was used to select the best restricted cubic spline model among models with five knots (appendix 2 p 8).
      • Burnham KP
      • Anderson DR
      Multimodel inference: understanding AIC and BIC in model selection.
      Applying the fitted models, we produced line plots of mean predicted daily Ct value with 95% bootstrap confidence intervals in each group, using 1000 bootstrap samples. Ct value trajectory plots for the first 21 days since the index date, as the reported approximate period over which viral shedding decreases towards the detection limit,
      • He X
      • Lau EHY
      • Wu P
      • et al.
      Temporal dynamics in viral shedding and transmissibility of COVID-19.
      were stratified by age group (≤65 or >65 years), CCI score (≤6 or >6), and vaccination status.
      • Wong CKH
      • Au ICH
      • Lau KTK
      • Lau EHY
      • Cowling BJ
      • Leung GM
      Real-world effectiveness of early molnupiravir or nirmatrelvir–ritonavir in hospitalised patients with COVID-19 without supplemental oxygen requirement on admission during Hong Kong's omicron BA.2 wave: a retrospective cohort study.
      Considering that viral burden rebound could be dependent on the timing and frequency of RT-qPCR tests, we explored the effect of such potential surveillance bias on daily Ct values among those with early or more frequent RT-qPCR tests (more than three Ct value measurements within 7 days and 14 days since the index date), and those with later or less frequent testing (three or fewer Ct value measurements in the same periods). Baseline characteristics were also compared between hospitalised patients with repeated (two or more) RT-qPCR measurements (included in our cohort) and those without repeated RT-qPCR measurements (excluded from our cohort), to identify if potential biases associated with non-random repeated RT-qPCR measurements would have affected the interpretation of our findings.
      The incidence of viral burden rebound in the molnupiravir, nirmatrelvir–ritonavir, and control groups was estimated. 95% CIs for estimates were calculated with the logit transformation method for binomial proportion confidence intervals. Potential predictors for viral burden rebound were assessed by logistic regression.
      To assess the potential association between viral burden rebound and the prespecified clinical outcomes, odds ratios (ORs) with 95% CIs were estimated by multivariable logistic regression, adjusting for the baseline covariables of age, sex, pre-existing comorbidities, vaccination status, concomitant treatments initiated, and Ct value on admission. A post-hoc logistic regression adjusting for these baseline covariables was also conducted to compare the incidence of viral burden rebound among the three groups. As a sensitivity analysis, we used a case-control design to estimate the adjusted OR for viral burden rebound occurring 28 days before a reference date between patients with and without the composite outcome. Viral burden rebound was observed within 28 days before the occurrence of clinical outcomes for cases, and within 28 days since the index date for controls; thus, both cases and controls had a unified 28-day observation time for the analysis (appendix 2 p 3). We also performed sensitivity analyses of the association between viral burden rebound and clinical outcomes by: stratifying the timing and frequency of RT-qPCR tests performed during the first 1 or 2 weeks of follow-up (ie, more than three vs three or fewer Ct value measurements); adjusting for the date of admission and study period (restricting to patients with an index date on or after March 16, 2022, when both molnupiravir and nirmatrelvir–ritonavir were available); excluding those with negative RT-qPCR results (ie, Ct values imputed with the value of 40) for the first measurement; applying propensity-score adjustment to control for residual confounding bias; and excluding control patients who were not eligible to receive oral antivirals (ie, drug contraindications to nirmatrelvir–ritonavir, severe renal impairment, or severe liver impairment). Additionally, we calculated the absolute risk differences in clinical outcomes between patients with and without viral burden rebound in each group.
      All statistical analyses were performed with Stata (version 17). Cubic splines of the logarithmic values were estimated with the Stata command mkspline with knots every 3 days. The mixed-effects restricted cubic spline regression was fitted with the mixed command in Stata with fixed effects for restricted cubic splines and random effects for individuals. All significance tests were two-tailed, with a p value of less than 0·05 considered to indicate statistical significance.

      Role of the funding source

      The funder of the study had no role in study design, data collection, data analysis, data interpretation, or writing of the report.

      Results

      Between Feb 26 and June 26, 2022, we identified 40 908 hospitalised patients with a confirmed diagnosis of COVID-19. After screening for eligibility, 4592 patients who did not initially require supplemental oxygen were included in our retrospective cohort and were observed from Feb 26 to July 3, 2022 (figure 1). Of the 4592 patients, 563 (12·3%) received molnupiravir, 242 (5·3%) received nirmatrelvir–ritonavir, and 3787 (82·5%) did not receive oral antiviral treatment (control group). Baseline characteristics of the study groups are presented in table 1. The cohort comprised 1998 (43·5%) women and 2594 (56·5%) men. The 5-day antiviral regimen was completed by 240 (99·2%) of the 242 patients receiving nirmatrelvir–ritonavir and 535 (95·0%) of the 563 patients receiving molnupiravir. Median duration from the index date to peak viral load was 0 days (IQR 0–3) for patients taking nirmatrelvir–ritonavir, 1 day (0–3) for patients taking molnupiravir, and 1 day (0–6) for control patients. Median times from the index date to two subsequent Ct measurement tests (measurement 2 and measurement 3) were 10 days (8–17) and 15 days (10–21) for patients taking nirmatrelvir–ritonavir, 10 days (8–15) and 13 days (11–18) for patients taking molnupiravir, and 10 days (8–16) and 14 days (10–20) for control patients. Median time to achieve a Ct value above 30 (ie, low viral burden
      • Wong CKH
      • Au ICH
      • Lau KTK
      • Lau EHY
      • Cowling BJ
      • Leung GM
      Real-world effectiveness of early molnupiravir or nirmatrelvir–ritonavir in hospitalised patients with COVID-19 without supplemental oxygen requirement on admission during Hong Kong's omicron BA.2 wave: a retrospective cohort study.
      ) was 8 days (3–14) for the nirmatrelvir–ritonavir group, 11 days (7–17) for the molnupiravir group, and 10 days (4–17) for the control group. Median time from the index date to initiation of antiviral therapy was 1 day (0–3) for the nirmatrelvir–ritonavir group and 1 day (1–3) for the molnupiravir group.
      Figure thumbnail gr1
      Figure 1Identification of patients receiving molnupiravir or nirmatrelvir–ritonavir and control patients
      Eligible patients were identified among those admitted to hospital with COVID-19 not requiring oxygen therapy from Feb 26 to July 3, 2022 in Hong Kong, China. Ct=cycle threshold.
      Table 1Baseline characteristics of hospitalised patients with COVID-19 in the molnupiravir, nirmatrelvir–ritonavir, and control groups
      Molnupiravir (n=563) Nirmatrelvir–ritonavir (n=242) Control (n=3787) p value
      Age, years 80·7 (12·5) 78·2 (14·2) 78·7 (14·6) 0·0058
      18–65 69 (12·3%) 34 (14·1%) 564 (14·9%) ..
      >65 494 (87·7%) 208 (86·0%) 3223 (85·1%) 0·25
      Sex
      Female 247 (43·9%) 104 (43·0%) 1647 (43·5%) ..
      Male 316 (56·1%) 138 (57·0%) 2140 (56·5%) 0·97
      Charlson Comorbidity Index 6·0 (2·0) 5·4 (1·8) 5·8 (2·1) 0·0004
      0–6 351 (62·3%) 183 (75·6%) 2537 (67·0%) 0·0012
      7–15 212 (37·7%) 59 (24·4%) 1250 (33·0%) ..
      Imported cases 0 1 (0·4%) 1 (<0·1%) NA
      Immunocompromised
      Immunocompromised patients included those with primary immunodeficiency or on active immunosuppressive treatment at baseline or in the past 12 months.
      73 (13·0%) 35 (14·5%) 401 (10·6%) 0·057
      Fully vaccinated
      Fully vaccinated status was defined as having received at least two doses of BNT162b2 or three doses of CoronaVac, and being at least 14 days since the last dose at baseline or the index date.22
      5 (0·9%) 11 (4·5%) 145 (3·8%) 0·0038
      Concomitant treatments initiated on the day of admission
      Remdesivir 18 (3·2%) 20 (8·3%) 345 (9·1%) <0·0001
      Antibiotics 485 (86·1%) 192 (79·3%) 3247 (85·7%) 0·022
      Immunomodulators 225 (40·0%) 99 (40·9%) 1956 (51·7%) <0·0001
      Dexamethasone 113 (20·1%) 59 (24·4%) 1326 (35·0%) <0·0001
      Other systemic steroid 145 (25·8%) 58 (24·0%) 1061 (28·0%) 0·24
      Interferon-β-1b 6 (1·1%) 9 (3·7%) 75 (2·0%) 0·051
      Baricitinib 1 (0·2%) 7 (2·9%) 15 (0·4%) <0·0001
      Tocilizumab 0 0 7 (0·2%) NA
      Cycle threshold value on admission, number of cycles 21·8 (6·1) 23·3 (6·9) 23·3 (6·8) <0·0001
      <20 268 (47·6%) 93 (38·4%) 1548 (40·9%) ..
      20 to <30 227 (40·3%) 99 (40·9%) 1495 (39·5%) ..
      30 to <35 43 (7·6%) 32 (13·2%) 461 (12·2%) ..
      ≥35 25 (4·4%) 18 (7·4%) 283 (7·5%) 0·00016
      Data are n (%) or mean (SD). NA=not applicable.
      * Immunocompromised patients included those with primary immunodeficiency or on active immunosuppressive treatment at baseline or in the past 12 months.
      Fully vaccinated status was defined as having received at least two doses of BNT162b2 or three doses of CoronaVac, and being at least 14 days since the last dose at baseline or the index date.
      • McMenamin ME
      • Nealon J
      • Lin Y
      • et al.
      Vaccine effectiveness of one, two, and three doses of BNT162b2 and CoronaVac against COVID-19 in Hong Kong: a population-based observational study.
      We assessed trajectories of viral burden, proxied by predicted Ct value from serial RT-qPCR measurements over the first 21 days of the disease course (figure 2). In the overall cohort, curves for the molnupiravir and control groups were similar, whereas the nirmatrelvir–ritonavir group showed earlier and quicker reduction in viral burden. Viral burden rebound was not apparent in any of the groups (figure 2; appendix 2 pp 9–10). However, on stratified analysis, viral burden rebound or plateauing of the decline in viral burden was discernible in the nirmatrelvir–ritonavir group in individuals at low risk of progression to severe COVID-19 at baseline (those aged 18–65 years, those with CCI 0–6, or those who were fully vaccinated), within 1–4 days of completion of the 5-day course of antiviral therapy. Viral burden rebound was not observed in individuals in the nirmatrelvir–ritonavir group at high risk of severe COVID-19 at baseline (age >65 years, CCI >6, or not fully vaccinated). Both the molnupiravir and control groups showed no viral rebound when stratified by risk factors. The changes in daily Ct value over the first 21 days of observation had no marked differences between those with early or more frequent Ct value measurements compared with those with later or less frequent testing (appendix 2 pp 4–6).
      Figure thumbnail gr2a
      Figure 2Changes in Ct value up to 21 days after the index date in the molnupiravir, nirmatrelvir–ritonavir, and control groups
      The index date (day 0) was defined as the date of first symptom onset, first positive quantitative RT-PCR or rapid antigen test, or initiation of molnupiravir or nirmatrelvir–ritonavir, whichever was the earliest. Curves were generated from generalised-additive mixed-effects models and show mean predicted daily Ct values with time for the fixed portion of the models. Shaded areas show the bootstrap 95% CIs of the Ct values from 1000 bootstrap samples. Sample sizes refer to the number of patients with at least one measurement during the respective 7-day intervals (0–6, 7–13, and 14–21 days) since the index date. Ct=cycle threshold.
      Figure thumbnail gr2b
      Figure 2Changes in Ct value up to 21 days after the index date in the molnupiravir, nirmatrelvir–ritonavir, and control groups
      The index date (day 0) was defined as the date of first symptom onset, first positive quantitative RT-PCR or rapid antigen test, or initiation of molnupiravir or nirmatrelvir–ritonavir, whichever was the earliest. Curves were generated from generalised-additive mixed-effects models and show mean predicted daily Ct values with time for the fixed portion of the models. Shaded areas show the bootstrap 95% CIs of the Ct values from 1000 bootstrap samples. Sample sizes refer to the number of patients with at least one measurement during the respective 7-day intervals (0–6, 7–13, and 14–21 days) since the index date. Ct=cycle threshold.
      Viral burden rebound occurred in 16 of 242 patients (6·6% [95% CI 4·1–10·5]) receiving nirmatrelvir–ritonavir, 27 of 563 (4·8% [3·3–6·9]) receiving molnupiravir, and 170 of 3787 (4·5% [3·9–5·2]) in the control group (table 2; appendix 2 p 7). In a post-hoc logistic regression adjusting for potential baseline confounders, we observed no significant difference in the incidence of viral burden rebound across the three groups (appendix 2 p 11). Immunocompromised status was associated with increased odds of viral burden rebound across the groups (nirmatrelvir–ritonavir: OR 7·37 [95% CI 2·56–21·26], p=0·0002; molnupiravir: 3·05 [1·28–7·25], p=0·012; control: 2·21 [1·50–3·27], p<0·0001). Among patients taking nirmatrelvir–ritonavir, the odds of viral burden rebound were higher in those aged 18–65 years (vs >65 years; 3·09 [1·00–9·53], p=0·050), those with high comorbidity burden (6·02 [2·09–17·38], p=0·0009), and those concomitantly taking corticosteroids (7·51 [1·67–33·82], p=0·0086), whereas the odds were lower in those who had not been fully vaccinated (0·16 [0·04–0·67], p=0·012). In patients taking molnupiravir, those aged 18–65 years (2·68 [1·09–6·58], p=0·032) or receiving concomitant corticosteroids (3·11 [1·23–7·82], p=0·016) had increased odds of viral burden rebound.
      Table 2Identification of risk factors associated with viral burden rebound
      Defined as a reduction in Ct value between two consecutive measurements larger than or equal to 3, with this decrease sustained in at least the immediately subsequent Ct measurement for those patients with three or more Ct measurements (ΔCt=Ct[measurement 1]– Ct[measurement 2] ≥3 and ΔCt=Ct[measurement 1] − Ct[measurement 3] ≥3).
      Molnupiravir (n=563) Nirmatrelvir–ritonavir (n=242) Control (n=3787)
      Patients with viral burden rebound, n/N (%) OR (95% CI) p value Patients with viral burden rebound, n/N (%) OR (95% CI) p value Patients with viral burden rebound, n/N (%) OR (95% CI) p value
      Overall 27/563 (4·8%) .. .. 16/242 (6·6%) .. .. 170/3787 (4·5%) .. ..
      Age, years
      18–65 7/69 (10·1%) 2·68 (1·09–6·58) 0·032 5/34 (14·7%) 3·09 (1·00–9·53) 0·050 28/564 (5·0%) 1·13 (0·75–1·72) 0·55
      >65 20/494 (4·0%) 1 (ref) .. 11/208 (5·3%) 1 (ref) .. 142/3223 (4·4%) 1 (ref) ..
      Sex
      Male 18/316 (5·7%) 1·60 (0·70–3·62) 0·26 10/138 (7·2%) 1·28 (0·45–3·63) 0·65 100/2140 (4·7%) 1·10 (0·81–1·51) 0·53
      Female 9/247 (3·6%) 1 (ref) .. 6/104 (5·8%) 1 (ref) .. 70/1647 (4·3%) 1 (ref) ..
      Charlson Comorbidity Index
      0–6 15/351 (4·3%) 1 (ref) .. 6/183 (3·3%) 1 (ref) .. 108/2537 (4·3%) 1 (ref) ..
      >6 12/212 (5·7%) 1·34 (0·62–2·93) 0·46 10/59 (16·9%) 6·02 (2·09–17·38) 0·0009 62/1250 (5·0%) 1·17 (0·85–1·62) 0·33
      Vaccination status
      Fully vaccinated
      Fully vaccinated status was defined as having at least two doses of BNT162b2 or three doses of CoronaVac, and being at least 14 days since the last dose at baseline or the index date.22
      0/5 1 (ref) .. 3/11 (27·3%) 1 (ref) .. 8/145 (5·5%) 1 (ref) ..
      Not fully vaccinated 27/558 (4·8%) NA NA 13/231 (5·6%) 0·16 (0·04–0·67) 0·012 162/3642 (4·4%) 0·80 (0·38–1·65) 0·54
      Concomitant corticosteroid use
      Yes 21/305 (6·9%) 3·11 (1·23–7·82) 0·016 14/123 (11·4%) 7·51 (1·67–33·82) 0·0086 123/2515 (4·9%) 1·34 (0·95–1·89) 0·094
      No 6/258 (2·3%) 1 (ref) .. 2/119 (1·7%) 1 (ref) .. 47/1272 (3·7%) 1 (ref) ..
      Immunocompromised
      Immunocompromised patients included those with primary immunodeficiency or on active immunosuppressive treatment at baseline or in the past 12 months.
      Yes 8/73 (11·0%) 3·05 (1·28–7·25) 0·012 8/35 (22·9%) 7·37 (2·56–21·26) 0·0002 34/401 (8·5%) 2·21 (1·50–3·27) <0·0001
      No 19/490 (3·9%) 1 (ref) .. 8/207 (3·9%) 1 (ref) .. 136/3386 (4·0%) 1 (ref) ..
      OR=odds ratio. NA=not applicable. Ct=cycle threshold.
      * Defined as a reduction in Ct value between two consecutive measurements larger than or equal to 3, with this decrease sustained in at least the immediately subsequent Ct measurement for those patients with three or more Ct measurements (ΔCt=Ct[measurement 1]– Ct[measurement 2] ≥3 and ΔCt=Ct[measurement 1] − Ct[measurement 3] ≥3).
      Fully vaccinated status was defined as having at least two doses of BNT162b2 or three doses of CoronaVac, and being at least 14 days since the last dose at baseline or the index date.
      • McMenamin ME
      • Nealon J
      • Lin Y
      • et al.
      Vaccine effectiveness of one, two, and three doses of BNT162b2 and CoronaVac against COVID-19 in Hong Kong: a population-based observational study.
      Immunocompromised patients included those with primary immunodeficiency or on active immunosuppressive treatment at baseline or in the past 12 months.
      During the period from day 5 of follow-up to the end of follow-up, 106 (18·8%) of 563 patients died in the molnupiravir group, 33 (13·6%) of 242 patients died in the nirmatrelvir–ritonavir group, and 1029 (27·2%) of 3787 died in the control group. We found no association between viral burden rebound and the odds of the composite outcome from day 5 onwards (nirmatrelvir–ritonavir: adjusted OR 1·90 [95% CI 0·48–7·59], p=0·36; molnupiravir: 1·05 [0·39–2·84], p=0·92; control: 1·27 [0·89–1·80], p=0·18; table 3). Additionally, when individual components of the composite outcome were analysed, viral burden rebound was not associated with the odds of mortality. Similarly, viral burden rebound was not associated with the odds of ICU admission or invasive mechanical ventilation. The absolute risk differences in clinical outcomes between those with and without viral burden rebound are reported in appendix 2 (pp 12–13). Results of the case-control design and other sensitivity analyses were broadly consistent with those of the main analysis, indicating no association between viral burden rebound and clinical outcomes (appendix 2 pp 14–23). When comparing patients with and without repeated RT-qPCR measurements, we observed some significant differences in baseline covariables of hospitalised patients, notably age, CCI, and initiation of concomitant treatments (appendix 2 pp 24–25). The observed differences suggest that patients with repeated RT-qPCR measurements were likely to have been at higher risk of progression to severe disease at baseline (ie, older age, higher CCI score, and more frequent use of concomitant treatments) than those without repeated measurements.
      Table 3Associations between viral burden rebound and study outcomes
      Molnupiravir (n=563) Nirmatrelvir–ritonavir (n=242) Control (n=3787)
      Patients, n/N
      Patients with the outcome during the first 4 days from the index date were excluded from the analysis.
      % or OR (95% CI) p value Patients, n/N
      Patients with the outcome during the first 4 days from the index date were excluded from the analysis.
      % or OR (95% CI) p value Patients, n/N
      Patients with the outcome during the first 4 days from the index date were excluded from the analysis.
      % or OR (95% CI) p value
      Composite outcome
      Composite outcome includes mortality, ICU admission, and initiation of invasive mechanical ventilation.
      112/558 20·1% (16·7–23·4) NA 36/240 15·0% (10·5–19·5) NA 1103/3736 29·5% (28·1–31·0) NA
      With viral burden rebound 6/27 22·2% (5·5–39·0) .. 8/15 53·3% (24·7–81·9) .. 61/167 36·5% (29·1–43·9) ..
      Without viral burden rebound 106/531 20·0% (16·6–23·4) .. 28/225 12·4% (8·1–16·8) .. 1042/3569 29·2% (27·7–30·7) ..
      Adjusted OR .. 1·05 (0·39–2·84) 0·92 .. 1·90 (0·48–7·59) 0·36 .. 1·27 (0·89–1·80) 0·18
      Mortality 106/563 18·8% (15·6–22·1) NA 33/242 13·6% (9·3–18·0) NA 1029/3787 27·2% (25·8–28·6) NA
      With viral burden rebound 5/27 18·5% (2·9–34·2) .. 8/16 50·0% (22·5–77·5) .. 55/170 32·4% (25·2–39·5) ..
      Without viral burden rebound 101/536 18·8% (15·5–22·2) .. 25/226 11·1% (6·9–15·2) .. 974/3617 26·9% (25·5–28·4) ..
      Adjusted OR .. 0·88 (0·30–2·55) 0·81 .. 2·62 (0·67–10·25) 0·17 .. 1·18 (0·82–1·69) 0·37
      ICU admission or invasive mechanical ventilation initiation 11/558 2·0% (0·8–3·1) NA 8/240 3·3% (1·0–5·6) NA 190/3736 5·1% (4·4–5·8) NA
      With viral burden rebound 1/27 3·7% (0·0–11·3) .. 3/15 20·0% (0·0–42·9) .. 12/167 7·2% (3·2–11·1) ..
      Without viral burden rebound 10/531 1·9% (0·7–3·0) .. 5/225 2·2% (0·3–4·2) .. 178/3569 5·0% (4·3–5·7) ..
      Adjusted OR .. 2·67 (0·29–24·22) 0·38 .. 3·35 (0·35–32·49) 0·30 .. 1·25 (0·66–2·35) 0·49
      The baseline covariables of age, sex, pre-existing morbidities, vaccination status, concomitant treatments initiated, and Ct value on admission were considered in the adjusted regression model. OR=odds ratio. NA=not applicable. ICU-intensive care unit.
      * Patients with the outcome during the first 4 days from the index date were excluded from the analysis.
      Composite outcome includes mortality, ICU admission, and initiation of invasive mechanical ventilation.

      Discussion

      Viral burden rebound was observed in 4–7% of hospitalised patients with non-oxygen-dependent COVID-19 during a pandemic wave dominated by the omicron BA.2.2 variant. This incidence is consistent with previous studies conducted during the peaks of omicron
      • Hay JA
      • Kissler SM
      • Fauver JR
      • et al.
      Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: a retrospective cohort study.
      and delta (B.1.617.2)
      • Anderson AS
      • Caubel P
      • Rusnak JM
      Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
      circulation. Furthermore, viral burden rebound appeared to occur among specific patient subgroups (ie, individuals at low baseline risk—including younger adults [age 18–65 years] and those who had been fully vaccinated—and patients in poor prior health including those who were immunocompromised and those taking corticosteroids). Importantly, viral burden rebound was not associated with adverse clinical outcomes.
      In a study that assessed viral load rebound in non-hospitalised COVID-19 patients enrolled in the EPIC-HR trial, present or persistent viral load rebound was reported in 17 (1·7%) of 980 patients taking placebo and 23 (2·3%) of 990 patients taking nirmatrelvir–ritonavir, when considering viral load rebound as at least a half log increase in viral load at day 10 and day 14 of follow-up relative to day 5 (end of treatment).
      • Anderson AS
      • Caubel P
      • Rusnak JM
      Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
      In addition to observing viral load rebound in both treatment groups, the occurrence of hospitalisation or death and baseline serostatus were similar between the groups; and the study suggested that viral load rebound was unlikely to be associated with a relapse of moderate-to-severe symptoms, low nirmatrelvir exposure, or treatment-emergent mutations at the Mpro gene or corresponding viral cleavage sites.
      • Anderson AS
      • Caubel P
      • Rusnak JM
      Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
      Notably, the EPIC-HR trial was conducted among unvaccinated patients infected with the delta variant. In the past year, cases of symptom recurrence or re-positive viral test after a brief recovery have mostly been described in patients taking nirmatrelvir–ritonavir who were fully vaccinated or even boosted, and with breakthrough infections of the omicron variant.
      • Anderson AS
      • Caubel P
      • Rusnak JM
      Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
      Various mechanisms have been proposed to explain COVID-19 rebound. Firstly, researchers have argued that it might represent a natural course of SARS-CoV-2 infection,
      Centers for Disease Control and Prevention
      CDC Health Advisory. COVID-19 rebound after paxlovid treatment.
      • Coulson JM
      • Adams A
      • Gray LA
      • Evans A
      COVID-19 “rebound” associated with nirmatrelvir/ritonavir pre-hospital therapy.
      • Ranganath N
      • O'Horo JC
      • Challener DW
      • et al.
      Rebound phenomenon after nirmatrelvir/ritonavir treatment of coronavirus disease-2019 (COVID-19) in high-risk persons.
      • Anderson AS
      • Caubel P
      • Rusnak JM
      Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
      involving a biphasic pattern of decrease in viral load after the peak that corresponds to different stages of innate and acquired immune responses,
      • Cao Y
      • Gao W
      • Caro L
      • Stone JA
      Immune-viral dynamics modeling for SARS-CoV-2 drug development.
      • Goyal A
      • Cardozo-Ojeda EF
      • Schiffer JT
      Potency and timing of antiviral therapy as determinants of duration of SARS-CoV-2 shedding and intensity of inflammatory response.
      • Néant N
      • Lingas G
      • Le Hingrat Q
      • et al.
      Modeling SARS-CoV-2 viral kinetics and association with mortality in hospitalized patients from the French COVID cohort.
      • Watson JA
      • Kissler SM
      • Day NPJ
      • Grad YH
      • White NJ
      Characterizing SARS-CoV-2 viral clearance kinetics to improve the design of antiviral pharmacometric studies.
      and intermittent viral shedding.
      • Dao TL
      • Hoang VT
      • Gautret P
      Recurrence of SARS-CoV-2 viral RNA in recovered COVID-19 patients: a narrative review.
      • Gao Z
      • Xu Y
      • Guo Y
      • et al.
      A systematic review of re-detectable positive virus nucleic acid among COVID-19 patients in recovery phase.
      • Yang C
      • Jiang M
      • Wang X
      • et al.
      Viral RNA level, serum antibody responses, and transmission risk in recovered COVID-19 patients with recurrent positive SARS-CoV-2 RNA test results: a population-based observational cohort study.
      • Zaffina S
      • Lanteri P
      • Gilardi F
      • et al.
      Recurrence, reactivation, or inflammatory rebound of SARS-CoV-2 infection with acute vestibular symptoms: a case report and revision of literature.
      Secondly, the dosage, duration, and timing of nirmatrelvir–ritonavir initiation might affect COVID-19 rebound. For instance, drug exposure might be insufficient for adequate viral clearance in some patients considering individual pharmacokinetics, comorbidities, or interactions with concomitant medications.
      • Carlin AF
      • Clark AE
      • Chaillon A
      • et al.
      Virologic and immunologic characterization of COVID-19 recrudescence after nirmatrelvir/ritonavir treatment.
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      • Antonelli G
      • Focosi D
      • Turriziani O
      • et al.
      Virological and clinical rebounds of COVID-19 soon after nirmatrelvir/ritonavir discontinuation.
      Additionally, the duration of therapy could be too short for specific patients, such as those who are immunocompromised, as host immune responses might not be mounted adequately after the antiviral is discontinued.
      • Epling BP
      • Rocco JM
      • Boswell KLL
      • et al.
      Clinical, virologic, and immunologic evaluation of symptomatic coronavirus disease 2019 rebound following nirmatrelvir/ritonavir treatment.
      • Antonelli G
      • Focosi D
      • Turriziani O
      • et al.
      Virological and clinical rebounds of COVID-19 soon after nirmatrelvir/ritonavir discontinuation.
      Similarly, another postulation is that nirmatrelvir–ritonavir therapy might be initiated too early during the course of disease for some cases, at which point the inhibition of viral replication could be transient, and viral activity could resume while the host immune responses are maturing, allowing for virological rebound and symptom recurrence.
      • Epling BP
      • Rocco JM
      • Boswell KLL
      • et al.
      Clinical, virologic, and immunologic evaluation of symptomatic coronavirus disease 2019 rebound following nirmatrelvir/ritonavir treatment.
      • Ranganath N
      • O'Horo JC
      • Challener DW
      • et al.
      Rebound phenomenon after nirmatrelvir/ritonavir treatment of coronavirus disease-2019 (COVID-19) in high-risk persons.
      • Antonelli G
      • Focosi D
      • Turriziani O
      • et al.
      Virological and clinical rebounds of COVID-19 soon after nirmatrelvir/ritonavir discontinuation.
      • Malden DE
      • Hong V
      • Lewin BJ
      • et al.
      Hospitalization and emergency department encounters for COVID-19 after paxlovid treatment—California, December 2021–May 2022.
      Modelling studies of SARS-CoV-2 infection have suggested that the potency, timing, and duration of antiviral treatments are likely to influence viral dynamics, with an extremely early initiation (eg, immediately after symptom onset) of a short-term therapy potentially prolonging viral shedding, or even leading to post-treatment rebound from incomplete viral suppression during the treatment course.
      • Cao Y
      • Gao W
      • Caro L
      • Stone JA
      Immune-viral dynamics modeling for SARS-CoV-2 drug development.
      • Goyal A
      • Cardozo-Ojeda EF
      • Schiffer JT
      Potency and timing of antiviral therapy as determinants of duration of SARS-CoV-2 shedding and intensity of inflammatory response.
      • Gao Z
      • Xu Y
      • Guo Y
      • et al.
      A systematic review of re-detectable positive virus nucleic acid among COVID-19 patients in recovery phase.
      In our cohort, viral burden rebound was observed in both groups receiving oral antivirals. Molnupiravir inhibits viral replication by inducing mutagenesis during viral RNA synthesis, which is probably irreversible, whereas nirmatrelvir inhibits replication by reversible inhibition of Mpro, and the viral enzyme could restore its function if it is not completely inhibited or once the drug is discontinued.
      • Yan S
      • Wu G
      Potential 3-chymotrypsin-like cysteine protease cleavage sites in the coronavirus polyproteins pp1a and pp1ab and their possible relevance to COVID-19 vaccine and drug development.
      • Yan W
      • Zheng Y
      • Zeng X
      • He B
      • Cheng W
      Structural biology of SARS-CoV-2: open the door for novel therapies.
      Thus, the possibility of viral rebound is higher with nirmatrelvir treatment while the host immune responses are still maturing. Thirdly, Mpro mutations that are potentially resistant to nirmatrelvir could occur naturally;
      • Hu Y
      • Lewandowski EM
      • Tan H
      • et al.
      Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
      • Zhou Y
      • Gammeltoft KA
      • Ryberg LA
      • et al.
      Nirmatrelvir-resistant SARS-CoV-2 variants with high fitness in an infectious cell culture system.
      however, current evidence does not generally support a treatment-emergent mutation as being responsible for viral rebound in patients receiving nirmatrelvir–ritonavir, nor does it support SARS-CoV-2 reinfection of a different strain.
      Centers for Disease Control and Prevention
      CDC Health Advisory. COVID-19 rebound after paxlovid treatment.
      • Charness ME
      • Gupta K
      • Stack G
      • et al.
      Rebound of SARS-CoV-2 infection after nirmatrelvir–ritonavir treatment.
      • Anderson AS
      • Caubel P
      • Rusnak JM
      Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
      • Antonelli G
      • Focosi D
      • Turriziani O
      • et al.
      Virological and clinical rebounds of COVID-19 soon after nirmatrelvir/ritonavir discontinuation.
      Lastly, while some researchers have recognised the role of immune factors in viral rebound, recent studies have confirmed that immune responses are likely to be intact in immunocompetent patients who have experienced symptom recurrence or re-positive viral tests after nirmatrelvir–ritonavir treatment, as shown by the presence of both neutralising antibodies and T-cell responses in adaptive immunity.
      • Carlin AF
      • Clark AE
      • Chaillon A
      • et al.
      Virologic and immunologic characterization of COVID-19 recrudescence after nirmatrelvir/ritonavir treatment.
      • Charness ME
      • Gupta K
      • Stack G
      • et al.
      Rebound of SARS-CoV-2 infection after nirmatrelvir–ritonavir treatment.
      • Epling BP
      • Rocco JM
      • Boswell KLL
      • et al.
      Clinical, virologic, and immunologic evaluation of symptomatic coronavirus disease 2019 rebound following nirmatrelvir/ritonavir treatment.
      Regarding risk predictors for viral burden rebound, we observed increased odds of rebound in patients who were immunocompromised or receiving concomitant corticosteroids in our study. This finding is generally in accordance with empirical evidence suggesting that viral rebound was more likely to occur in patients receiving immunosuppressants and organ transplants, than in those without these factors.
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      Additionally, among seven patients with viral rebound, culturable virus was isolated from the patients who had underlying immune suppression.
      • Epling BP
      • Rocco JM
      • Boswell KLL
      • et al.
      Clinical, virologic, and immunologic evaluation of symptomatic coronavirus disease 2019 rebound following nirmatrelvir/ritonavir treatment.
      Consistent with a preprint study by Wang and colleagues,
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      patients with COVID-19 rebound after oral antiviral treatment in our cohort had more pre-existing comorbidities than those without COVID-19 rebound; however, further research is needed to delineate the relationship between comorbidities and age among patients with and without rebound. Interestingly, patients with COVID-19 rebound after oral antiviral treatment in the previous study also had higher vaccination rates than those without,
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      which was evident in our nirmatrelvir–ritonavir cohort. In a small prospective observational study of fully vaccinated or boosted individuals with breakthrough SARS-CoV-2 infections of the omicron BA.2 lineage, three (27·3%) of 11 patients treated with nirmatrelvir–ritonavir had viral rebound (at least two Ct values ≥35 followed by at least two Ct values <35),
      • Dai EY
      • Lee KA
      • Nathanson AB
      • et al.
      Viral kinetics of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) omicron infection in mRNA-vaccinated individuals treated and not treated with nirmatrelvir–ritonavir.
      which is the same proportion as in our nirmatrelvir–ritonavir cohort who had been fully vaccinated and experienced viral burden rebound (three [27·3%] of 11). These findings raise the possibility of vaccine-induced immune imprinting, in which breakthrough natural infection might recall vaccine-induced memory responses among vaccinated individuals. Such immune imprinting to the ancestral strain of SARS-CoV-2 as elicited by COVID-19 vaccines could potentially render the development of immune responses, especially neutralising antibodies, against variant strains less effective.
      • Wheatley AK
      • Fox A
      • Tan H-X
      • et al.
      Immune imprinting and SARS-CoV-2 vaccine design.
      This effect might be particularly relevant for breakthrough infections with the omicron variant in boosted individuals, given that both cross-reactive humoral and adaptive immunity could be less potent against this variant of concern compared with previous variants of concern.
      • Reynolds CJ
      • Pade C
      • Gibbons JM
      • et al.
      Immune boosting by B.1.1.529 (omicron) depends on previous SARS-CoV-2 exposure.
      Even among COVID-19 patients who were not receiving oral antivirals, a cohort study by Hay and colleagues
      • Hay JA
      • Kissler SM
      • Fauver JR
      • et al.
      Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: a retrospective cohort study.
      identified a higher rate of viral rebound in boosted individuals compared with two-dose vaccinated or unvaccinated individuals. Although an increased rate of viral clearance has been recognised with vaccination and breakthrough infections,
      • Kissler SM
      • Fauver JR
      • Mack C
      • et al.
      Viral dynamics of SARS-CoV-2 variants in vaccinated and unvaccinated persons.
      further studies are needed to explore the mechanisms of COVID-19 rebound in individuals who have been fully vaccinated or boosted. Ideally, future studies should measure patient immune responses, to test whether vaccine-induced immune imprinting has a role in limiting immune activity against the omicron variant, and thus predisposes patients to virological rebound after the completion of antiviral treatment, taking into account patient serological status and time since last vaccine dose.
      • Ranganath N
      • O'Horo JC
      • Challener DW
      • et al.
      Rebound phenomenon after nirmatrelvir/ritonavir treatment of coronavirus disease-2019 (COVID-19) in high-risk persons.
      Our study has several limitations. Firstly, although Ct values can be considered a proxy of viral burden in patients with COVID-19, we did not have access to information on the omicron subvariants causing infection, the corresponding standard curve for quantification of viral load, or viral culture results to complement the observation of viral RNA shedding. In addition, the prognostic consequences of viral burden rebound have not yet been determined. Nevertheless, during our observation period, 98·4% of SARS-CoV-2 infections were by the omicron BA.2.2 subvariant in Hong Kong.
      • Chen L-L
      • Abdullah SMU
      • Chan W-M
      • et al.
      Contribution of low population immunity to the severe omicron BA.2 outbreak in Hong Kong.
      The absence of SARS-CoV-2 sequencing data also prevents us from excluding the possibility of treatment-resistant mutations, or differentiating between relapse or re-positivity versus reinfection, although reinfection occurring within such a short period of time would be rare. Secondly, during the study period, when the public health-care system was overwhelmed with COVID-19 cases, Ct measurements might not have been performed regularly, since a particular Ct value cutoff was no longer adopted as one of the criteria for discharge.
      The Government of the Hong Kong Special Administrative Region
      Government announces latest criteria for discharge from isolation and home quarantine.
      Nonetheless, we excluded patients with missing Ct values before or during antiviral treatment and after antiviral treatment, and control patients with missing Ct values after 5 days of the first measurement, to ensure that serial measurements could be obtained for the identification of viral rebound. With the understanding that early or more frequent RT-qPCR tests could increase the likelihood of viral rebound detection, we did a further analysis of surveillance bias; this had minimal effect on the base case results. We did observe that patients with repeated RT-qPCR measurements (included in this study) were likely to have been at higher risk of progression to severe disease at baseline than those without repeated measurements (excluded from the analyses); thus, potential selection bias cannot be ruled out. Thirdly, data on detailed clinical symptoms, or rapid antigen test results after the index date, were not available, nor were data on immune responses or serostatus in patients with and without viral rebound. Fourthly, data availability meant that the only internally valid sampling frame was among hospitalised patients. Therefore, the generalisability of our results might be restricted to the inpatient setting and characteristics of the included patients (ie, mostly older patients who had not been fully vaccinated). Finally, although we attempted to explore the associations between patient characteristics and viral burden rebound, the interpretation of our results is likely to be limited by the small sample sizes of patient subgroups, and further work is required to precisely estimate the risk of rebound in relation to individual comorbidities and clinical conditions. Indeed, the preprint study by Wang and colleagues suggested some patient characteristics associated with viral rebound versus no rebound among patients taking oral antivirals.
      • Wang L
      • Berger NA
      • Davis PB
      • Kaelber DC
      • Volkow ND
      • Xu R
      COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
      Furthermore, various research questions are yet to be addressed, including a standard definition of COVID-19 rebound, whether a correlation exists between symptom recurrence and virological rebound, the nature and frequency of rebound occurrence in different patient populations, potential mechanisms of rebound, and the effect of antiviral therapy (dosage, duration, and timing) on rebound. Although not statistically significant, the apparent over-representation of patients with viral burden rebound who met the clinical outcomes of mortality, intensive care unit admission, or invasive mechanical ventilation initiation in the nirmatrelvir–ritonavir group, compared with the molnupiravir and control groups, should be verified by future studies.
      Based on observations in this population-wide retrospective cohort of hospitalised COVID-19 patients, we conclude that viral burden rebound was not a common event, and was observed with or without oral antiviral use. Increased odds of rebound were apparent in specific patient subgroups. Viral burden rebound did not appear to be associated with adverse serious clinical outcomes, and thus oral antivirals should continue to be offered to COVID-19 patients at risk of severe or fatal outcomes. Further research is needed to establish a standard definition of COVID-19 rebound for comparison across studies, and to identify the underlying mechanism, and possible variation by timing, dosage, and duration of antiviral therapy.
      This online publication has been corrected. The corrected version first appeared at thelancet.com/infection on December 5, 2023
      Contributors
      The study was designed by CKHW, GML, and BJC. All authors had access to the underlying data in the study. The underlying data were accessed and verified by CKHW, ICHA, and EHYL. Data were analysed by CKHW and ICHA. CKHW and KTKL wrote the first draft of the manuscript which was revised by IFNH, LLMP, GML, and BJC. All authors interpreted data, provided critical review and revision of the text, and approved the final version of the manuscript, and were responsible for the decision to submit for publication.

      Data sharing

      The clinical outcome data and vaccination records were extracted from the Hospital Authority database in Hong Kong and data on confirmed cases of SARS-CoV-2 infection were extracted from the eSARS data provided by the Centre for Health Protection (Department of Health, The Government of the Hong Kong Special Administrative Region). The data custodians (the Hospital Authority and the Department of Health) provided the underlying individual patient data to The University of Hong Kong for the purpose of performing scientific research for the study. Restrictions apply to the availability of these data, which were used under licence of the Hospital Authority and the Department of Health for this study. The authors cannot transmit or release the data, in whole or in part in whatever form or media, or to any other parties or place outside Hong Kong; and the authors fully comply with the duties under the laws of Hong Kong relating to the protection of personal data including those under the Personal Data (Privacy) Ordinance and its principles in all aspects.

      Declaration of interests

      CKHW reports receipt of research funding from the EuroQoL Group Research Foundation, AstraZeneca, and Boehringer Ingelheim, unrelated to this work. BJC reports honoraria from AstraZeneca, Fosun Pharma, GlaxoSmithKline, Moderna, Pfizer, Roche, and Sanofi Pasteur. BJC has provided scientific advice to Pfizer and AstraZeneca on issues related to disease burden and vaccine effectiveness; BJC has not provided scientific advice to Pfizer or AstraZeneca related to COVID-19 antiviral effectiveness, and has not received any funding from Pfizer or AstraZeneca for any research on antiviral effectiveness including the current work. IFNH has received speaker honoraria from MSD and was an advisory board member for Pfizer, Gilead, Fosun, MSD, and AstraZeneca. All other authors declare no competing interests.
      Acknowledgments
      This study was supported by the Health and Medical Research Fund (reference number COVID190210) administered by the Health Bureau of The Government of the Hong Kong Special Administrative Region, China and by AIR@InnoHK administered by the Innovation and Technology Commission of the Government of the Hong Kong Special Administrative Region, China.
      Editorial note: The Lancet Group takes a neutral position with respect to territorial claims in institutional affiliations.

      Supplementary Materials

      References

      1. 1.
        • Hammond J
        • Leister-Tebbe H
        • Gardner A
        • et al.
        Oral nirmatrelvir for high-risk, nonhospitalized adults with COVID-19.
        N Engl J Med. 2022; 386: 1397-1408
      2. 2.
        • Jayk Bernal A
        • Gomes da Silva MM
        • Musungaie DB
        • et al.
        Molnupiravir for oral treatment of COVID-19 in nonhospitalized patients.
        N Engl J Med. 2022; 386: 509-520
      3. 3.
        • National Institutes of Health
        Therapeutic management of nonhospitalized adults with COVID-19.
      4. 4.
        • WHO
        Therapeutics and COVID-19: living guideline, 16 September 2022.
        https://www.who.int/publications/i/item/WHO-2019-nCoV-therapeutics-2022.5
        Date: Sept 16, 2022
        Date accessed: November 18, 2022
      5. 5.
        • Arbel R
        • Wolff Sagy Y
        • Hoshen M
        • et al.
        Nirmatrelvir use and severe COVID-19 outcomes during the omicron surge.
        N Engl J Med. 2022; 387: 790-798
      6. 6.
        • Najjar-Debbiny R
        • Gronich N
        • Weber G
        • et al.
        Effectiveness of paxlovid in reducing severe COVID-19 and mortality in high risk patients.
        Clin Infect Dis. 2022; (published online June 2.)
      7. 7.
        • Dryden-Peterson S
        • Kim A
        • Kim AY
        • et al.
        Nirmatrelvir plus ritonavir for early COVID-19 in a large US health system: a population-based cohort study.
        Ann Intern Med. 2023; 176: 77-84
      8. 8.
        • Fatima M
        • Azeem S
        • Saeed J
        • Shahid A
        • Cheema HA
        Efficacy and safety of molnupiravir for COVID-19 patients.
        Eur J Intern Med. 2022; 102: 118-121
      9. 9.
        • Johnson MG
        • Puenpatom A
        • Moncada PA
        • et al.
        Effect of molnupiravir on biomarkers, respiratory interventions, and medical services in COVID-19: a randomized, placebo-controlled trial.
        Ann Intern Med. 2022; 175: 1126-1134
      10. 10.
        • Zou R
        • Peng L
        • Shu D
        • et al.
        Antiviral efficacy and safety of molnupiravir against omicron variant infection: a randomized controlled clinical trial.
        Front Pharmacol. 2022; 13939573
      11. 11.
        • Centers for Disease Control and Prevention
        CDC Health Advisory. COVID-19 rebound after paxlovid treatment.
        https://emergency.cdc.gov/han/2022/pdf/CDC_HAN_467.pdf
        Date: May 24, 2022
        Date accessed: November 18, 2022
      12. 12.
        • Boucau J
        • Uddin R
        • Marino C
        • et al.
        Characterization of virologic rebound following nirmatrelvir–ritonavir treatment for coronavirus disease 2019 (COVID-19).
        Clin Infect Dis. 2022; (published online June 23.)
      13. 13.
        • Carlin AF
        • Clark AE
        • Chaillon A
        • et al.
        Virologic and immunologic characterization of COVID-19 recrudescence after nirmatrelvir/ritonavir treatment.
        Clin Infect Dis. 2022; (published online June 20.)
      14. 14.
        • Charness ME
        • Gupta K
        • Stack G
        • et al.
        Rebound of SARS-CoV-2 infection after nirmatrelvir–ritonavir treatment.
        N Engl J Med. 2022; 387: 1045-1047
      15. 15.
        • Coulson JM
        • Adams A
        • Gray LA
        • Evans A
        COVID-19 “rebound” associated with nirmatrelvir/ritonavir pre-hospital therapy.
        J Infect. 2022; 85: 436-480
      16. 16.
        • Epling BP
        • Rocco JM
        • Boswell KLL
        • et al.
        Clinical, virologic, and immunologic evaluation of symptomatic coronavirus disease 2019 rebound following nirmatrelvir/ritonavir treatment.
        Clin Infect Dis. 2022; (published online Oct 6.)
      17. 17.
        • Ranganath N
        • O'Horo JC
        • Challener DW
        • et al.
        Rebound phenomenon after nirmatrelvir/ritonavir treatment of coronavirus disease-2019 (COVID-19) in high-risk persons.
        Clin Infect Dis. 2022; (published online June 14.)
      18. 18.
        • Wang L
        • Berger NA
        • Davis PB
        • Kaelber DC
        • Volkow ND
        • Xu R
        COVID-19 rebound after paxlovid and molnupiravir during January–June 2022.
        medRxiv. 2022; (published online June 22.) (preprint).
      19. 19.
        • Chen L-L
        • Abdullah SMU
        • Chan W-M
        • et al.
        Contribution of low population immunity to the severe omicron BA.2 outbreak in Hong Kong.
        Nat Commun. 2022; 133618
      20. 20.
        • Wong CKH
        • Au ICH
        • Lau KTK
        • Lau EHY
        • Cowling BJ
        • Leung GM
        Real-world effectiveness of early molnupiravir or nirmatrelvir–ritonavir in hospitalised patients with COVID-19 without supplemental oxygen requirement on admission during Hong Kong's omicron BA.2 wave: a retrospective cohort study.
        Lancet Inf Dis. 2022; 22: 1681-1693
      21. 21.
        • Pouwels KB
        • Pritchard E
        • Matthews PC
        • et al.
        Effect of delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK.
        Nat Med. 2021; 27: 2127-2135
      22. 22.
        • McMenamin ME
        • Nealon J
        • Lin Y
        • et al.
        Vaccine effectiveness of one, two, and three doses of BNT162b2 and CoronaVac against COVID-19 in Hong Kong: a population-based observational study.
        Lancet Infect Dis. 2022; 22: 1435-1443
      23. 23.
        • Wong CKH
        • Wan EYF
        • Luo S
        • et al.
        Clinical outcomes of different therapeutic options for COVID-19 in two Chinese case cohorts: a propensity-score analysis.
        EClinicalMedicine. 2021; 32100743
      24. 24.
        • Wong CKH
        • Au ICH
        • Lau KTK
        • Lau EHY
        • Cowling BJ
        • Leung GM
        Real-world effectiveness of molnupiravir and nirmatrelvir plus ritonavir against mortality, hospitalisation, and in-hospital outcomes among community-dwelling, ambulatory patients with confirmed SARS-CoV-2 infection during the omicron wave in Hong Kong: an observational study.
        Lancet. 2022; 400: 1213-1222
      25. 25.
        • Hospital Authority Central Committee on Infectious Diseases and Emergency Response
        Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.5.
        Hospital Authority, Kowloon2022
      26. 26.
        • Hospital Authority Central Committee on Infectious Diseases and Emergency Response
        Interim recommendation on clinical management of adult cases with coronavirus disease 2019 (COVID-19). Version 1.12.
        Hospital Authority, Kowloon2022
      27. 27.
        • Zou L
        • Ruan F
        • Huang M
        • et al.
        SARS-CoV-2 viral load in upper respiratory specimens of infected patients.
        N Engl J Med. 2020; 382: 1177-1179
      28. 28.
        • Tsui ELH
        • Lui CSM
        • Woo PPS
        • et al.
        Development of a data-driven COVID-19 prognostication tool to inform triage and step-down care for hospitalised patients in Hong Kong: a population-based cohort study.
        BMC Med Inform Decis Mak. 2020; 20: 323
      29. 29.
        • Lau LLH
        • Ip DKM
        • Nishiura H
        • et al.
        Heterogeneity in viral shedding among individuals with medically attended influenza A virus infection.
        J Infect Dis. 2013; 207: 1281-1285
      30. 30.
        • Burnham KP
        • Anderson DR
        Multimodel inference: understanding AIC and BIC in model selection.
        Sociol Methods Res. 2004; 33: 261-304
      31. 31.
        • He X
        • Lau EHY
        • Wu P
        • et al.
        Temporal dynamics in viral shedding and transmissibility of COVID-19.
        Nat Med. 2020; 26: 672-675
      32. 32.
        • Hay JA
        • Kissler SM
        • Fauver JR
        • et al.
        Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: a retrospective cohort study.
        eLife. 2022; 11e81849
      33. 33.
        • Anderson AS
        • Caubel P
        • Rusnak JM
        Nirmatrelvir–ritonavir and viral load rebound in COVID-19.
        N Engl J Med. 2022; 387: 1047-1049
      34. 34.
        • Cao Y
        • Gao W
        • Caro L
        • Stone JA
        Immune-viral dynamics modeling for SARS-CoV-2 drug development.
        Clin Transl Sci. 2021; 14: 2348-2359
      35. 35.
        • Goyal A
        • Cardozo-Ojeda EF
        • Schiffer JT
        Potency and timing of antiviral therapy as determinants of duration of SARS-CoV-2 shedding and intensity of inflammatory response.
        Sci Adv. 2020; 6eabc7112
      36. 36.
        • Néant N
        • Lingas G
        • Le Hingrat Q
        • et al.
        Modeling SARS-CoV-2 viral kinetics and association with mortality in hospitalized patients from the French COVID cohort.
        Proc Natl Acad Sci USA. 2021; 118e2017962118
      37. 37.
        • Watson JA
        • Kissler SM
        • Day NPJ
        • Grad YH
        • White NJ
        Characterizing SARS-CoV-2 viral clearance kinetics to improve the design of antiviral pharmacometric studies.
        Antimicrob Agents Chemother. 2022; 66e0019222
      38. 38.
        • Dao TL
        • Hoang VT
        • Gautret P
        Recurrence of SARS-CoV-2 viral RNA in recovered COVID-19 patients: a narrative review.
        Eur J Clin Microbiol Infect Dis. 2021; 40: 13-25
      39. 39.
        • Gao Z
        • Xu Y
        • Guo Y
        • et al.
        A systematic review of re-detectable positive virus nucleic acid among COVID-19 patients in recovery phase.
        Infect Genet Evol. 2020; 85104494
      40. 40.
        • Yang C
        • Jiang M
        • Wang X
        • et al.
        Viral RNA level, serum antibody responses, and transmission risk in recovered COVID-19 patients with recurrent positive SARS-CoV-2 RNA test results: a population-based observational cohort study.
        Emerg Microbes Infect. 2020; 9: 2368-2378
      41. 41.
        • Zaffina S
        • Lanteri P
        • Gilardi F
        • et al.
        Recurrence, reactivation, or inflammatory rebound of SARS-CoV-2 infection with acute vestibular symptoms: a case report and revision of literature.
        Front Hum Neurosci. 2021; 15666468
      42. 42.
        • Antonelli G
        • Focosi D
        • Turriziani O
        • et al.
        Virological and clinical rebounds of COVID-19 soon after nirmatrelvir/ritonavir discontinuation.
        Clin Microbiol Infect. 2022; 28: 1657-1658
      43. 43.
        • Malden DE
        • Hong V
        • Lewin BJ
        • et al.
        Hospitalization and emergency department encounters for COVID-19 after paxlovid treatment—California, December 2021–May 2022.
        MMWR Morb Mortal Wkly Rep. 2022; 71: 830-833
      44. 44.
        • Yan S
        • Wu G
        Potential 3-chymotrypsin-like cysteine protease cleavage sites in the coronavirus polyproteins pp1a and pp1ab and their possible relevance to COVID-19 vaccine and drug development.
        FASEB J. 2021; 35e21573
      45. 45.
        • Yan W
        • Zheng Y
        • Zeng X
        • He B
        • Cheng W
        Structural biology of SARS-CoV-2: open the door for novel therapies.
        Signal Transduct Target Ther. 2022; 7: 26
      46. 46.
        • Hu Y
        • Lewandowski EM
        • Tan H
        • et al.
        Naturally occurring mutations of SARS-CoV-2 main protease confer drug resistance to nirmatrelvir.
        bioRxiv. 2022; (published online Sept 6.) (preprint).
      47. 47.
        • Zhou Y
        • Gammeltoft KA
        • Ryberg LA
        • et al.
        Nirmatrelvir-resistant SARS-CoV-2 variants with high fitness in an infectious cell culture system.
        Sci Adv. 2022; 8eadd7197
      48. 48.
        • Dai EY
        • Lee KA
        • Nathanson AB
        • et al.
        Viral kinetics of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) omicron infection in mRNA-vaccinated individuals treated and not treated with nirmatrelvir–ritonavir.
        medRxiv. 2022; (published online Aug 4.) (preprint).
      49. 49.
        • Wheatley AK
        • Fox A
        • Tan H-X
        • et al.
        Immune imprinting and SARS-CoV-2 vaccine design.
        Trends Immunol. 2021; 42: 956-959
      50. 50.
        • Reynolds CJ
        • Pade C
        • Gibbons JM
        • et al.
        Immune boosting by B.1.1.529 (omicron) depends on previous SARS-CoV-2 exposure.
        Science. 2022; 377eabq1841
      51. 51.
        • Kissler SM
        • Fauver JR
        • Mack C
        • et al.
        Viral dynamics of SARS-CoV-2 variants in vaccinated and unvaccinated persons.
        N Engl J Med. 2021; 385: 2489-2491
      52. 52.
        • The Government of the Hong Kong Special Administrative Region
        Government announces latest criteria for discharge from isolation and home quarantine.
        https://www.info.gov.hk/gia/general/202202/26/P2022022600750.htm
        Date: Feb 26, 2022
        Date accessed: November 18, 2022

      Linked Articles

      • SARS-CoV-2 rebound with and without antivirals
        • As the COVID-19 pandemic continues, interventions for preventing SARS-CoV-2 transmission and progression to severe disease remain priorities. Vaccines against COVID-19 have an important role in preventing symptomatic infections that would otherwise lead to hospitalisation and death, but are less effective in preventing transmission. In addition, monoclonal antibodies have substantially reduced effectiveness against recently emerged strains,1 and should be tailored to the variants. Therefore, antiviral compounds, specifically nirmatrelvir–ritonavir, molnupiravir, and remdesivir, when used promptly at the onset of SARS-CoV-2 infection, are currently the most effective drug therapies for inhibiting viral replication.
        • Full-Text
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      • Correction to Lancet Infect Dis 2023; 23: 683–95
        • Wong CKH, Lau KTK, Au ICH, et al. Viral burden rebound in hospitalised patients with COVID-19 receiving oral antivirals in Hong Kong: a population-wide retrospective cohort study. Lancet Infect Dis 2023; 23: 683–95—In the Acknowledgments of this Article, the statement should have included support from “… AIR@InnoHK administered by the Innovation and Technology Commission of the Government of the Hong Kong Special Administrative Region, China”. This correction has been made to the online version as of Dec 5, 2023.
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