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Research Articles

Orchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock

Stacey L. Harmer, John B. Hogenesch, Marty Straume, Hur-Song Chang, Bin Han, Tong Zhu, Xun Wang, Joel A. Kreps, and Steve A. KayAuthors Info & Affiliations
Science
15 Dec 2000
Vol 290, Issue 5499
pp. 2110-2113
DOI: 10.1126/science.290.5499.2110
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Abstract

Like most organisms, plants have endogenous biological clocks that coordinate internal events with the external environment. We used high-density oligonucleotide microarrays to examine gene expression in Arabidopsis and found that 6% of the more than 8000 genes on the array exhibited circadian changes in steady-state messenger RNA levels. Clusters of circadian-regulated genes were found in pathways involved in plant responses to light and other key metabolic pathways. Computational analysis of cycling genes allowed the identification of a highly conserved promoter motif that we found to be required for circadian control of gene expression. Our study presents a comprehensive view of the temporal compartmentalization of physiological pathways by the circadian clock in a eukaryote.

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Published In

Science
Volume 290 | Issue 5499
15 December 2000

Submission history

Received: 7 September 2000
Accepted: 26 October 2000
Published in print: 15 December 2000

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Authors

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Stacey L. Harmer
Department of Cell Biology, Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
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John B. Hogenesch
Genomics Institute of the Novartis Research Foundation, 3115 Merryfield Row, La Jolla, CA 92121, USA.
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Marty Straume
Center for Biomathematical Technology, NSF Center for Biological Timing, Division of Endocrinology and Metabolism, Department of Internal Medicine, University of Virginia, Charlottesville, VA 22904, USA.
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Hur-Song Chang
Novartis Agricultural Discovery Institute, 3115 Merryfield Row, San Diego, CA 92121, USA.
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Bin Han
Novartis Agricultural Discovery Institute, 3115 Merryfield Row, San Diego, CA 92121, USA.
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Tong Zhu
Novartis Agricultural Discovery Institute, 3115 Merryfield Row, San Diego, CA 92121, USA.
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Xun Wang
Novartis Agricultural Discovery Institute, 3115 Merryfield Row, San Diego, CA 92121, USA.
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Joel A. Kreps
Novartis Agricultural Discovery Institute, 3115 Merryfield Row, San Diego, CA 92121, USA.
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Steve A. Kay*
Department of Cell Biology, Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Genomics Institute of the Novartis Research Foundation, 3115 Merryfield Row, La Jolla, CA 92121, USA.
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Notes

*
To whom correspondence should be addressed. E-mail: [email protected]

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  • Stacey L. Harmer et al.
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Orchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock.Science290,2110-2113(2000).DOI:10.1126/science.290.5499.2110

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