Remediation of the protein data bank archive

Nucleic Acids Res. 2008 Jan;36(Database issue):D426-33. doi: 10.1093/nar/gkm937. Epub 2007 Dec 11.

Abstract

The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDB-RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)-have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Archives
  • Crystallography, X-Ray
  • Databases, Protein* / standards
  • Dictionaries, Chemical as Topic
  • Internet
  • Macromolecular Substances / chemistry*
  • Microscopy, Electron
  • Nuclear Magnetic Resonance, Biomolecular
  • Nucleic Acids / chemistry
  • Proteins / chemistry
  • Reproducibility of Results
  • Terminology as Topic

Substances

  • Macromolecular Substances
  • Nucleic Acids
  • Proteins