Cap-snatching mechanism in yeast L-A double-stranded RNA virus

Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17667-71. doi: 10.1073/pnas.1111900108. Epub 2011 Oct 10.

Abstract

The 5' cap structure (m(7)GpppX-) is an essential feature of eukaryotic mRNA required for mRNA stability and efficient translation. Influenza virus furnishes its mRNA with this structure by a cap-snatching mechanism, in which the viral polymerase cleaves host mRNA endonucleolytically 10-13 nucleotides from the 5' end and utilizes the capped fragment as a primer to synthesize viral transcripts. Here we report a unique cap-snatching mechanism by which the yeast double-stranded RNA totivirus L-A furnishes its transcript with a cap structure derived from mRNA. Unlike influenza virus, L-A transfers only m(7)Gp from the cap donor to the 5' end of the viral transcript, thus preserving the 5' α- and β-phosphates of the transcript in the triphosphate linkage of the final product. This in vitro capping reaction requires His154 of the coat protein Gag, a residue essential for decapping of host mRNA and known to form m(7)Gp-His adduct. Furthermore, the synthesis of capped viral transcripts in vivo and their expression were greatly compromised by the Arg154 mutation, indicating the involvement of Gag in the cap-snatching reaction. The overall reaction and the structure around the catalytic site in Gag resemble those of guanylyltransferase, a key enzyme of cellular mRNA capping, suggesting convergent evolution. Given that Pol of L-A is confined inside the virion and unable to access host mRNA in the cytoplasm, the structural protein Gag rather than Pol catalyzing this unique cap-snatching reaction exemplifies the versatility as well as the adaptability of eukaryotic RNA viruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Crystallography
  • DNA Primers / genetics
  • Gene Products, gag / genetics
  • Gene Products, gag / metabolism*
  • Histidine / metabolism
  • Immunoprecipitation
  • Models, Genetic
  • Molecular Sequence Data
  • RNA Caps / metabolism*
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae / virology*
  • Sequence Analysis, DNA
  • Totivirus / genetics
  • Totivirus / metabolism*

Substances

  • DNA Primers
  • Gene Products, gag
  • RNA Caps
  • Histidine