 Download MendeleyInfluence of Precipitants on Molecular Arrangements and Space Groups of Protein Crystals
Fudo, S., Fei, Q., Nukaga, M., Hoshino, T.(2017) Cryst Growth Des 17: 534-542
5JHT
Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with potassium sodium tartrate
- PDB DOI: https://doi.org/10.2210/pdb5JHT/pdb
- Classification: HYDROLASE
- Organism(s): Influenza A virus (A/Puerto Rico/8/1934(H1N1))
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-04-21 Released: 2016-05-11
- Funding Organization(s): Japan Society for the Promotion of Science
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.238
- R-Value Work: 0.194
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 |
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| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase acidic protein | 191 | Influenza A virus (A/Puerto Rico/8/1934(H1N1)) | Mutation(s): 0 Gene Names: PA |
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UniProt |
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Find proteins for P03433 (Influenza A virus (strain A/Puerto Rico/8/1934 H1N1))
Explore P03433
Go to UniProtKB: P03433
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Entity Groups |
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03433 | ||||
Sequence AnnotationsExpand |
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA Query on TLA |
D [auth A] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |
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| MN Query on MN |
B [auth A], C [auth A] |
MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.238
- R-Value Work: 0.194
- R-Value Observed: 0.197
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.859 | α = 90 |
| b = 66.859 | β = 90 |
| c = 128.003 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| HKL-2000 | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-05-11 Deposition Author(s): Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science | Japan | 24590548 |
Revision History (Full details and data files)
- Version 1.0: 2016-05-11
Type: Initial release - Version 1.1: 2017-03-01
Changes: Database references - Version 1.2: 2020-02-19
Changes: Data collection - Version 1.3: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
