 Download MendeleyMain Protease SARS-COV-2 in complex with the inhibitor MG-87
EL Kilani, H., Hilgenfeld, R.To be published.
8AIQ
Mpro of SARS COV-2 in complex with the MG-87 inhibitor
- PDB DOI: https://doi.org/10.2210/pdb8AIQ/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Severe acute respiratory syndrome coronavirus
- Expression System: Escherichia coli B
- Mutation(s): No
- Deposited: 2022-07-27 Released: 2023-08-16
- Funding Organization(s): European Commission
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.223
- R-Value Work: 0.168
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 |
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| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Replicase polyprotein 1ab | A [auth AAA], B [auth BBB] |
306 | Severe acute respiratory syndrome coronavirus | Mutation(s): 0 Gene Names: rep, 1a-1b |
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UniProt |
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Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTD1
Go to UniProtKB: P0DTD1
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Entity Groups |
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0DTD1 | ||||
Sequence AnnotationsExpand |
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MXU (Subject of Investigation/LOI) Query on MXU |
C [auth AAA], E [auth BBB] |
~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S},3~{R})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate C24 H35 N5 O7 WNCHATFCLSCVLN-LEUOFYLZSA-N |
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| CL Query on CL |
D [auth AAA] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.19 Å
- R-Value Free: 0.223
- R-Value Work: 0.168
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.941 | α = 90 |
| b = 63.773 | β = 91.251 |
| c = 103.513 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| REFMAC | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-08-16 Deposition Author(s): El Kilani, H., Hilgenfeld, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Commission | European Union | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-08-16
Type: Initial release
