Review
Omics approaches for food authentication
Marina Creydt,
Markus Fischer,
Marina Creydt
Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg, Hamburg, Germany
Search for more papers by this authorCorresponding Author
Markus Fischer
Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg, Hamburg, Germany
Correspondence: Professor Markus Fischer, Hamburg School of Food Science, Grindelallee 117, 20146 Hamburg, Germany
E-mail: [email protected]
Search for more papers by this author
Marina Creydt,
Markus Fischer,
Marina Creydt
Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg, Hamburg, Germany
Search for more papers by this authorCorresponding Author
Markus Fischer
Hamburg School of Food Science, Institute of Food Chemistry, University of Hamburg, Hamburg, Germany
Correspondence: Professor Markus Fischer, Hamburg School of Food Science, Grindelallee 117, 20146 Hamburg, Germany
E-mail: [email protected]
Search for more papers by this authorAbstract
The development of analytical strategies to fight against food fraud is currently one of the most developing fields in food science as the food value chain becomes increasingly complex and global. Food can be certified by clear labeling but also by objective analytical methods. As shown recently by several groups, the omics technologies such as genomics, proteomics, metabolomics, and isotopolomics are suitable to prove the geographical origin, the production or cultivation process, and the biological and the overall chemical identity of food. This article describes different analytical approaches beginning with non-targeted strategies as well as the further developmental stages of transferring the methods to routine laboratories.
5 References
- 1Spink, J., Moyer, D. C., J. Food Sci. 2011, 76, 157–163.
- 2Wilson, B., Swindled: the dark history of food fraud, from poisoned candy to counterfeit coffee, Princeton University Press, Princeton 2008.
- 3Moore, J. C., Spink, J., Lipp, M., J. Food Sci. 2012, 77, 118–126.
- 4Herrmann, L., Felbinger, C., Haase, I., Rudolph, B., Biermann, B., Fischer, M., J. Agric. Food Chem. 2015, 63, 4539–4544.
- 5Herrmann, L., Haase, I., Blauhut, M., Barz, N., Fischer, M., J. Agric. Food Chem. 2014, 62, 12118–12127.
- 6Bruning, P., Haase, I., Matissek, R., Fischer, M., J. Agric. Food Chem. 2011, 59, 11910–11917.
- 7Haase, I., Bruning, P., Matissek, R., Fischer, M., J. Agric. Food Chem. 2013, 61, 3414–3418.
- 8Schelm, S., Haase, I., Fischer, C., Fischer, M., J. Agric. Food Chem. 2017, 65, 516–522.
- 9Mayer, F., Haase, I., Graubner, A., Heising, F., Paschke-Kratzin, A., Fischer, M., J. Agric. Food Chem. 2012, 60, 1350–1357.
- 10Ghaani, M., Cozzolino, C. A., Castelli, G., Farris, S., Trends Food Sci. Technol. 2016, 51, 1–11.
- 11Kumari, L., Narsaiah, K., Grewal, M. K., Anurag, R. K., Trends Food Sci. Technol. 2015, 43, 144–161.
- 12Puddu, M., Paunescu, D., Stark, W. J., Grass, R. N., ACS Nano. 2014, 8, 2677–2685.
- 13Liang, K., Thomasson, J. A., Shen, M. X., Armstrong, P. R., Ge, Y., Lee, K. M., Herrman, T. J., Food Control 2013, 33, 359–365.
- 14Liang, K., Thomasson, J. A., Lee, K. M., Shen, M. X., Ge, Y. F., Herrman, T. J., Biosyst. Eng. 2012, 113, 395–401.
- 15Fiehn, O., Comp. Funct. Genomics 2001, 2, 155–168.
- 16Cifuentes, A., J. Chromatogr. A 2009, 1216, 7109.
- 17Herrero, M., Simo, C., Garcia-Canas, V., Ibanez, E., Cifuentes, A., Mass Spectrom. Rev. 2012, 31, 49–69.
- 18Wishart, D. S., Jewison, T., Guo, A. C., Wilson, M., Knox, C., Liu, Y., Djoumbou, Y., Mandal, R., Aziat, F., Dong, E., Bouatra, S., Sinelnikov, I., Arndt, D., Xia, J., Liu, P., Yallou, F., Bjorndahl, T., Perez-Pineiro, R., Eisner, R., Allen, F., Neveu, V., Greiner, R., Scalbert, A., Nucleic Acids Res. 2013, 41, 801–807.
- 19Horai, H., Arita, M., Kanaya, S., Nihei, Y., Ikeda, T., Suwa, K., Ojima, Y., Tanaka, K., Tanaka, S., Aoshima, K., Oda, Y., Kakazu, Y., Kusano, M., Tohge, T., Matsuda, F., Sawada, Y., Hirai, M. Y., Nakanishi, H., Ikeda, K., Akimoto, N., Maoka, T., Takahashi, H., Ara, T., Sakurai, N., Suzuki, H., Shibata, D., Neumann, S., Iida, T., Tanaka, K., Funatsu, K., Matsuura, F., Soga, T., Taguchi, R., Saito, K., Nishioka, T., J. Mass Spectrom. 2010, 45, 703–714.
- 20Tautenhahn, R., Cho, K., Uritboonthai, W., Zhu, Z., Patti, G. J., Siuzdak, G., Nat. Biotechnol. 2012, 30, 826–828.
- 21Consonni, R., Cagliani, L. R., Stocchero, M., Porretta, S., J. Agric. Food Chem. 2009, 57, 4506–4513.
- 22Lo Feudo, G., Naccarato, A., Sindona, G., Tagarelli, A., J. Agric. Food Chem. 2010, 58, 3801–3807.
- 23Ishii, T., Tsunewaki, K., Genome 1991, 34, 818–826.
- 24Oh, H., Seo, B., Lee, S., Ahn, D. H., Jo, E., Park, J. K., Min, G. S., Mitochondrial DNA, Part A 2016, 27, 2835–2837.
- 25Kane, N., Sveinsson, S., Dempewolf, H., Yang, J. Y., Zhang, D., Engels, J. M., Cronk, Q., Am. J. Bot. 2012, 99, 320–329.
- 26Wu, Y., Zhang, H., Han, J., wang, B., Wang, W., Ju, X., Chen, Y., Eur. Food Res. Technol. 2011, 233, 313–324.
- 27Spaniolas, S., Bazakos, C., Awad, M., Kalaitzis, P., J. Agric. Food Chem. 2008, 56, 6886–6891.
- 28Spaniolas, S., Bazakos, C., Spano, T., Zoghby, C., Kalaitzis, P., Food Chem. 2010, 122, 850–856.
- 29Kumar, S., Kahlon, T., Chaudhary, S., Food Chem. 2011, 127, 1335–1341.
- 30Galimberti, A., De Mattia, F., Losa, A., Bruni, I., Federici, S., Casiraghi, M., Martellos, S., Labra, M., Food Res. Int. 2013, 50, 55–63.
- 31Goodwin, S., McPherson, J. D., McCombie, W. R., Nat. Rev. Genet. 2016, 17, 333–351.
- 32Metzker, M. L., Nat. Rev. Genet. 2010, 11, 31–46.
- 33Durney, B. C., Crihfield, C. L., Holland, L. A., Anal. Bioanal. Chem. 2015, 407, 6923–6938.
- 34Vaagt, F., Haase, I., Fischer, M., J. Agric. Food Chem. 2013, 61, 1833–1840.
- 35Trantakis, I. A., Spaniolas, S., Kalaitzis, P., Ioannou, P. C., Tucker, G. A., Christopoulos, T. K., J. Agric. Food Chem. 2012, 60, 713–717.
- 36Focke, F., Haase, I., Fischer, M., J. Agric. Food Chem. 2013, 61, 2943–2949.
- 37Bigot, C., Meile, J.-C., Kapitan, A., Montet, D., Food Control 2015, 48, 123–129.
- 38El Sheikha, A. F., Durand, N., Sarter, S., Okullo, J. B. L., Montet, D., Food Control 2012, 24, 57–63.
- 39El Sheikha, A. F., Montet, D., Crit. Rev. Food Sci. Nutr. 2016, 56, 306–317.
- 40Arcuri, E. F., El Sheikha, A. F., Rychlik, T., Piro-Métayer, I., Montet, D., Food Control 2013, 30, 1–6.
- 41Mezzasalma, V., Sandionigi, A., Bruni, I., Bruno, A., Lovicu, G., Casiraghi, M., Labra, M., PloS One 2017, 12, e0184615.
- 42Rychlik, T., Szwengiel, A., Bednarek, M., Arcuri, E., Montet, D., Mayo, B., Nowak, J., Czarnecki, Z., Food Control 2017, 73, 1074–1081.
- 43Mazzeo, M. F., Siciliano, R. A., J. Proteomics 2016, 147, 119–124.
- 44Stahl, A., Schröder, U., J. Agric. Food Chem. 2017, 65, 7519–7527.
- 45Kim, G.-D., Seo, J.-K., Yum, H.-W., Jeong, J.-Y., Yang, H.-S., Food Chem. 2017, 217, 163–170.
- 46Gunning, Y., Watson, A. D., Rigby, N. M., Philo, M., Peazer, J. K., Kemsley, E. K., Jove-J. Vis. Exp. 2016.
- 47von Bargen, C., Brockmeyer, J., Humpf, H.-U., J. Agric. Food Chem. 2014, 62, 9428–9435.
- 48Wang, J., Kliks, M. M., Qu, W., Jun, S., Shi, G., Li, Q. X., J. Agric. Food Chem. 2009, 57, 10081–10088.
- 49Nawrocki, A., Thorup-Kristensen, K., Jensen, O. N., J. Proteomics 2011, 74, 2810–2825.
- 50Meltretter, J., Wust, J., Pischetsrieder, M., J. Agric. Food Chem. 2014, 62, 10903–10915.
- 51Holland, J. W., Gupta, R., Deeth, H. C., Alewood, P. F., J. Agric. Food Chem. 2011, 59, 1837–1846.
- 52Abd El-Salam, M. H., Int. J. Dairy Technol. 2014, 67, 153–166.
- 53Boone, C., Adamec, J., in: J. Silberring (Ed.), Proteomic Profiling and Analytical Chemistry (Second Edition), Elsevier, Boston 2016, pp. 175–191.
- 54Di Silvestre, D., Brambilla, F., Agnetti, G., Mauri, P., in: G. Agnetti, M. L. Lindsey, D. B. Foster (Eds.), Manual of Cardiovascular Proteomics, Springer, Cham 2016, pp. 155–185.
10.1007/978-3-319-31828-8_7 Google Scholar
- 55Ortea, I., O'Connor, G., Maquet, A., J. Proteomics 2016, 147, 212–225.
- 56Guarino, C., Fuselli, F., La Mantia, A., Longo, L., Faberi, A., Marianella, R. M., Rapid Commun. Mass Spectrom. 2010, 24, 705–713.
- 57Calvano, C. D., De Ceglie, C., Monopoli, A., Zambonin, C. G., J. Mass Spectrom. 2012, 47, 1141–1149.
- 58Chen, R. K., Chang, L. W., Chung, Y. Y., Lee, M. H., Ling, Y. C., Rapid Commun. Mass Spectrom. 2004, 18, 1167–1171.
- 59Anagnostopoulos, A. K., Katsafadou, A. I., Pierros, V., Kontopodis, E., Fthenakis, G. C., Arsenos, G., Karkabounas, S. C., Tzora, A., Skoufos, I., Tsangaris, G. T., J. Proteomics 2016, 147, 76–84.
- 60Yang, Y., Bu, D., Zhao, X., Sun, P., Wang, J., Zhou, L., J. Proteome Res. 2013, 12, 1660–1667.
- 61Lu, W., Liu, J., Gao, B., Lv, X., Yu, L., J. Dairy Sci. 2017, 100, 6980–6986.
- 62Jadhav, S., Sevior, D., Bhave, M., Palombo, E. A., J. Proteomics 2014, 97, 100–106.
- 63Callahan, J. H., Shefcheck, K. J., Williams, T. L., Musser, S. M., Anal. Chem. 2006, 78, 1789–1800.
- 64Fagerquist, C. K., Zaragoza, W. J., Sultan, O., Woo, N., Quinones, B., Cooley, M. B., Mandrell, R. E., App. Environ. Microbiol. 2014, 80, 2928–2940.
- 65Pechanova, O., Pechan, T., Rodriguez, J. M., Williams, W. P., Brown, A. E., Proteomics 2013, 13, 1513–1518.
- 66Di Girolamo, F., Muraca, M., Mazzina, O., Lante, I., Dahdah, L., Curr. Opin. Allergy Clin. Immunol. 2015, 15, 259–266.
- 67Fiehn, O., Plant Mol. Biol. 2002, 48, 155–171.
- 68Wishart, D., Villas-Bôas, S. G., Roessner, U., Hansen, M. A. E., Smedsgaard, J., Nielsen, J., Metabolome Analysis, John Wiley & Sons, Hoboken 2006, pp. 253–288.
- 69Beecher, C. W., in: G. Harrigan, R. Goodacre (Eds.), Metabolic Profiling: Its Role in Biomarker Discovery and Gene Function Analysis, Springer, New York 2003, pp. 311–319.
10.1007/978-1-4615-0333-0_17 Google Scholar
- 70Trethewey, R. N., Curr. Opin. Plant Biol. 2004, 7, 196–201.
- 71Wishart, D. S., Brief. Bioinform. 2007, 8, 279–293.
- 72Creydt, M., Fischer, M., Anal. Chem. 2017, 89, 10474–10486.
- 73Dettmer, K., Aronov, P. A., Hammock, B. D., Mass Spectrom. Rev. 2007, 26, 51–78.
- 74Villas-Boas, S. G., Mas, S., Akesson, M., Smedsgaard, J., Nielsen, J., Mass Spectrom. Rev. 2005, 24, 613–646.
- 75Emwas, A.-H. M., in: J. T. Bjerrum (Ed.), Metabonomics: Methods and Protocols, Springer, New York 2015, pp. 161–193.
- 76Canela, N., Rodríguez, M. Á., Baiges, I., Nadal, P., Arola, L., Electrophoresis 2016, 37, 1748–1767.
- 77Kusano, M., Baxter, I., Fukushima, A., Oikawa, A., Okazaki, Y., Nakabayashi, R., Bouvrette, D. J., Achard, F., Jakubowski, A. R., Ballam, J. M., Phillips, J. R., Culler, A. H., Saito, K., Harrigan, G. G., Metabolomics 2015, 11, 261–270.
- 78Ibáñez, C., Acunha, T., Valdés, A., García-Cañas, V., Cifuentes, A., Simó, C., in: P. Schmitt-Kopplin (Ed.), Capillary Electrophoresis: Methods and Protocols, Springer, New York 2016, pp. 471–507.
- 79Alvarez, G., Montero, L., Llorens, L., Castro-Puyana, M., Cifuentes, A., Electrophoresis 2018, 39, 136–159.
- 80Navarro-Reig, M., Jaumot, J., Baglai, A., Vivó-Truyols, G., Schoenmakers, P. J., Tauler, R., Anal. Chem. 2017, 89, 7675–7683.
- 81Stoll, D. R., Carr, P. W., Anal. Chem. 2017, 89, 519–531.
- 82Lísa, M., Cífková, E., Khalikova, M., Ovčačíková, M., Holčapek, M., J. Chromatogr. A. 2017, 1525, 96–108.
- 83Yamada, T., Bamba, T., in: P. Wood (Ed.), Lipidomics, Springer, New York 2017, pp. 109–131.
10.1007/978-1-4939-6946-3_8 Google Scholar
- 84Mairinger, T., Causon, T. J., Hann, S., Curr. Opin. Chem. Biol. 2018, 42, 9–15.
- 85D'Agostino, P. A., Hancock, J. R., Chenier, C. L., Lepage, C. R. J., J. Chromatogr. A. 2006, 1110, 86–94.
- 86Domin, M., Cody, R., R. Soc. Chem. 2014.
- 87Black, C., Chevallier, O. P., Elliott, C. T., Trends Analyt. Chem. 2016, 82, 268–278.
- 88Lohumi, S., Lee, S., Lee, H., Cho, B.-K. Trends Food Sci. Technol. 2015, 46, 85–98.
- 89Tang, L., Binns, C. W., Lee, A. H., J. Health Popul. Nutr. 2015, 33, 117–122.
- 90Klockmann, S., Reiner, E., Cain, N., Fischer, M., J. Agric. Food Chem. 2017, 65, 1456–1465.
- 91Laursen, K. H., Schjoerring, J. K., Kelly, S. D., Husted, S., Trends Analyt. Chem. 2014, 59, 73–82.
- 92Oddone, M., Aceto, M., Baldizzone, M., Musso, D., Osella, D., J. Agric. Food Chem. 2009, 57, 3404–3408.
- 93D'Archivio, A. A., Giannitto, A., Incani, A., Nisi, S., Food Chem. 2014, 157, 485–489.
- 94Kim, J. S., Hwang, I. M., Lee, G. H., Park, Y. M., Choi, J. Y., Jamila, N., Khan, N., Kim, K. S., Meat Sci. 2017, 123, 13–20.
- 95Sun, S., Guo, B., Wei, Y., Fan, M., Food Chem. 2011, 124, 1151–1156.
- 96Hu, S. L., Xue, J., Lin, Y., Yu, J. P., Zhou, J. G., Anal. Lett. 2014, 47, 1400–1408.
- 97Spalla, S., Baffi, C., Barbante, C., Turretta, C., Cozzi, G., Beone, G. M., Bettinelli, M., Rapid Commun. Mass Spectrom. 2009, 23, 3285–3292.
- 98Ma, G., Zhang, Y., Zhang, J., Wang, G., Chen, L., Zhang, M., Liu, T., Liu, X., Lu, C., Food Control 2016, 59, 714–720.
- 99Bailey, S. W., Hornbeck, J. W., Driscoll, C. T., Gaudette, H. E., Water Resour. Res. 1996, 32, 707–719.
- 100Swoboda, S., Brunner, M., Boulyga, S. F., Galler, P., Horacek, M., Prohaska, T., Anal. Bioanal. Chem. 2008, 390, 487–494.
- 101Capo, R. C., Stewart, B. W., Chadwick, O. A., Geoderma 1998, 82, 197–225.
- 102Werner, R. A., Brand, W. A., Rapid Commun. Mass Spectrom. 2001, 15, 501–519.
- 103Camin, F., Bontempo, L., Perini, M., Piasentier, E., Compr. Rev. Food Sci. Food Saf. 2016, 15, 868–877.
- 104Kelly, S., Heaton, K., Hoogewerff, J., Trends Food Sci. Technol. 2005, 16, 555–567.
- 105Raco, B., Dotsika, E., Poutoukis, D., Battaglini, R., Chantzi, P., Food Chem. 2015, 168, 588–594.
- 106Magdas, D. A., Vedeanu, N. S., Puscas, R., Chemical Papers 2012, 66, 152–155.
- 107Werner, R. A., Rossmann, A., Isotopes Environ. Health Stud. 2015, 51, 58–67.
- 108Dittrich, C., Struck, U., Rodel, M. O., Ecol. Evol. 2017, 7, 2525–2534.
- 109Krivachy, N., Rossmann, A., Schmidt, H.-L., Food Control 2015, 48, 143–150.
- 110Luo, D., Dong, H., Luo, H., Xian, Y., Wan, J., Guo, X., Wu, Y., Food Chem. 2015, 174, 197–201.
- 111Molkentin, J., Meisel, H., Lehmann, I., Rehbein, H., Eur. Food Res. Technol. 2007, 224, 535–543.
- 112Molkentin, J., Giesemann, A., Anal. Bioanal. Chem. 2010, 398, 1493–1500.
- 113Molkentin, J., Giesemann, A., Anal. Bioanal. Chem. 2007, 388, 297–305.
- 114Tanz, N., Schmidt, H.-L., J. Agric. Food Chem. 2010, 58, 3139–3146.
- 115Bahar, B., Schmidt, O., Moloney, A. P., Scrimgeour, C. M., Begley, I. S., Monahan, F. J., Food Chem. 2008, 106, 1299–1305.
- 116Camin, F., Bontempo, L., Heinrich, K., Horacek, M., Kelly, S. D., Schlicht, C., Thomas, F., Monahan, F. J., Hoogewerff, J., Rossmann, A., Anal. Bioanal. Chem. 2007, 389, 309–320.
- 117Manca, G., Franco, M. A., Versini, G., Camin, F., Rossmann, A., Tola, A., J. Dairy Sci., 89, 831–839.
- 118Bateman, A. S., Kelly, S. D., Isotopes Environ. Health Stud. 2007, 43, 237–247.
- 119Molkentin, J., Food Chem. 2013, 137, 25–30.
- 120Zhao, Y., Yang, S. M., Wang, D. H., J. Sci. Food Agr. 2016, 96, 3950–3955.
- 121Chung, I.-M., Park, I., Yoon, J.-Y., Yang, Y.-S., Kim, S.-H., Food Chem. 2014, 160, 214–218.
- 122Schmidt, O., Quilter, J. M., Bahar, B., Moloney, A. P., Scrimgeour, C. M., Begley, I. S., Monahan, F. J., Food Chem. 2005, 91, 545–549.
- 123Camin, F., Perini, M., Bontempo, L., Fabroni, S., Faedi, W., Magnani, S., Baruzzi, G., Bonoli, M., Tabilio, M. R., Musmeci, S., Rossmann, A., Kelly, S. D., Rapisarda, P., Food Chem. 2011, 125, 1072–1082.
- 124Mihailova, A., Pedentchouk, N., Kelly, S. D., Food Chem. 2014, 154, 238–245.
- 125Chung, I.-M., Lee, T.-J., Oh, Y.-T., Ghimire, B. K., Jang, I.-B., Kim, S.-H., J. Ginseng Res. 2017, 41, 195–200.
- 126Xi, X., Int. J. Atmos. Sci. 2014, 2014, 16.
- 127Ernst, M., Silva, D. B., Silva, R. R., Vencio, R. Z., Lopes, N. P., Nat. Prod. Rep. 2014, 31, 784–806.
- 128Bevilacqua, M., Bro, R., Marini, F., Rinnan, A., Rasmussen, M. A., Skov, T., Trends Analyt. Chem. 2017, 96, 42–51.
- 129Katajamaa, M., Miettinen, J., Oresic, M., Bioinformatics 2006, 22, 634–636.
- 130Pluskal, T., Castillo, S., Villar-Briones, A., Oresic, M., BMC Bioinf. 2010, 11, 395.
- 131Smith, C. A., Want, E. J., O'Maille, G., Abagyan, R., Siuzdak, G., Anal. Chem. 2006, 78, 779–787.
- 132Tautenhahn, R., Patti, G. J., Rinehart, D., Siuzdak, G., Anal. Chem. 2012, 84, 5035–5039.
- 133Xia, J., Mandal, R., Sinelnikov, I. V., Broadhurst, D., Wishart, D. S., Nucleic Acids Res. 2012, 40, 127–133.
Citing Literature
