Skip to main content
Log in

Phylogenetic Diversity of the Archaeal Component in Microbial Mats on Coral-like Structures Associated with Methane Seeps in the Black Sea

  • Published:
Microbiology Aims and scope Submit manuscript

Abstract

With the use of molecular ecology methods, the archaeal component of microbial mats on coral-like structures associated with methane seeps occurring at a depth of about 200 m in the Black Sea was investigated without the isolation of pure cultures. Using archaea-specific 16S rDNA–targeted oligonucleotide primes, long fragments of genes were amplified, cloned, and sequenced and their phylogenetic analysis was carried out. It was shown that archaea in microbial mats on coral-like structures are represented by two dominant phylotypes that belong to the kingdoms Crenarchaeota and Euryarchaeota and are not specifically related to any described archaeal species. The possible role of the revealed archaea in the process of anaerobic methane oxidation is discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

REFERENCES

  1. Zehnder, A.J. and Brock, T.D., Anaerobic Methane Oxidation: Occurrence and Ecology, Appl. Environ. Microbiol., 1980, vol. 39, pp. 194-204.

    Google Scholar 

  2. Hoehler, T.M., Alperin, M.J., Albert, D.B., and Martens, C.S., Field and Laboratory Studies of Methane Oxidation in Anoxic Marine Sediments: Evidence for a Methanogen-Sulfate Reducer Consortium, Global Biogeochem. Cycles, 1994, vol. 8, pp. 451-463.

    Google Scholar 

  3. Hinrichs, K.-U., Hayes, J.M., Sylva, S.P., Brewer, P.G., and DeLong, E.F., Methane-Consuming Archaebacteria in Marine Sediments, Nature(London), 1999, vol. 398, pp. 802-805.

    Google Scholar 

  4. Boetius, A., Ravenschlag, K., Schubert, G.J., Rickert, D., Widdel, F., Gieseke, A., Amann, R., Jorgensen, B.B., Witte, U., and Pfannkuche, O., A Marine Microbial Consortium Apparently Mediating Anaerobic Oxidation of Methane, Nature(London), 2000, vol. 407, pp. 623-626.

    Google Scholar 

  5. Orphan, V.J. and Hinrichs, K.-U., Ussler III, W., Paull, C.K., Taylor, L.T., Sylva, S.P., Hayes, J.M., and DeLong, E.F., Comparative Analysis of Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in Anoxic Marine Sediments, Appl. Environ. Microbiol.,2001, vol. 67, pp. 1922-1934.

    Google Scholar 

  6. Orphan, V.J., House, C.H., Hinrichs, K.-U., McKeegan, K.D., and DeLong, E.F., Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analyses, Science,2001, vol. 293, pp. 484-487.

    Google Scholar 

  7. Salentine, D.L. and Reeburgh, W.S., New Perspectives on Anaerobic Methane Oxidation, Environ. Microbiol., 2000, vol. 2, pp. 477-484.

    Google Scholar 

  8. Ivanov, M.V., Polikarpov, G.G., Lein, A.Yu., et al., Biogeochemistry of the Carbon Cycle in the Region of Methane Seeps in the Black Sea, Dokl. Akad. Nauk SSSR, 1991, vol. 320, no. 5, pp. 1235-1240.

    Google Scholar 

  9. Pimenov, N.V., Rusanov, I.I., Poglazova, M.N., et al., Bacterial Mats on Coral-like Structures at Methane Seeps in the Black Sea, Mikrobiologiya, 1997, vol. 66, no. 3, pp. 412-428.

    Google Scholar 

  10. Kolganova, T.V., Kuznetsov, B.B., and Tourova, T.P., Designing and Testing Oligonucleotide Primers for Amplification and Sequencing of Archaeal 16S rRNA Genes, Mikrobiologiya, 2002, vol. 71, no. 2, pp. 283-286.

    Google Scholar 

  11. Edwards, U., Rogall, T., Bloeker, H., Ende, M.D., and Boeettge, E.C., Isolation and Direct Complete Nucleotide Determination of Entire Genes, Characterization of Gene Coding for 16S Ribosomal RNA, Nucleic Acids Res., 1989, vol. 17, pp. 7843-7853.

    Google Scholar 

  12. Holmes, A.J., Costello, A., Lidstrom, M.E., and Murrel, J.C., Evidence That Particulate Methane Monooxygenase and Ammonia Monooxygenase May Be Evolutionary Related, FEMS Microbiol. Lett., 1995, vol. 132, pp. 203-208.

    Google Scholar 

  13. Felsenstein, J., PHYLIP, Phylogenetic Inference Package (Version 3.2), Cladistics, 1989, vol. 5, pp. 164-166.

    Google Scholar 

  14. Vetriani, C., Jannasch, H.W., MacGregor, B., Stahl, D.A., and Reysenbach, A.-L., Population Structure and Phylogenetic Characterization of Marine Benthic Archaea in Deep-Sea Sediments, Appl. Environ. Microbiol., 1999, vol. 65, no. 10, pp. 4375-4384.

    Google Scholar 

  15. Thomsen, T.R., Finster, K., and Ramsing, N.B., Biogeochemical and Molecular Signatures of Anaerobic Methane Oxidation in a Marine Sediment, Appl. Environ. Microbiol., 2001, vol. 67, pp. 1646-1656.

    Google Scholar 

  16. Takai, K. and Horikoshi, K., Genetic Diversity of Archaea in Deep-Sea Hydrothermal Vent Environments, Genetics,1999, vol. 152, pp. 1285-1297.

    Google Scholar 

  17. Schleper, C., DeLong, E.F., Preston, C.M., Feldman, F.A., Wu, K.-Y., and Swanson, R.V., Genomic Analysis Reveals Chromosomal Variation in Natural Populations of the Uncultured Psychrophilic Archaeon Cenarchaeum symbiosum, J. Bacteriol., 1998, vol. 180, pp. 5003-5009.

    Google Scholar 

  18. Preston, C.M., Wu, K.Y., Molinski, T.F., and DeLong, E.F., A Psychrophilic Crenarchaeon Inhabits a Marine Sponge: Cenarchaeum symbiosumgen. nov., sp. nov, Proc. Natl. Acad. Sci. USA, 1996, vol. 93, pp. 6241-6246.

    Google Scholar 

  19. Christoserdova, L., Vorholt, J.A., Thauer, R.K., and Lidstrom, M.E., C1 Transfer Enzymes and Coenzymes Linking Methylotrophic Bacteria and Methanotrophic Archaea, Science, 1998, vol. 281, pp. 99-102.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Tourova, T.P., Kolganova, T.V., Kuznetsov, B.B. et al. Phylogenetic Diversity of the Archaeal Component in Microbial Mats on Coral-like Structures Associated with Methane Seeps in the Black Sea. Microbiology 71, 196–201 (2002). https://doi.org/10.1023/A:1015102422144

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1015102422144

Navigation