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Abstract

The domestic dog exhibits greater diversity in body size than any other terrestrial vertebrate. We used a strategy that exploits the breed structure of dogs to investigate the genetic basis of size. First, through a genome-wide scan, we identified a major quantitative trait locus (QTL) on chromosome 15 influencing size variation within a single breed. Second, we examined genetic variation in the 15-megabase interval surrounding the QTL in small and giant breeds and found marked evidence for a selective sweep spanning a single gene (IGF1), encoding insulin-like growth factor 1. A single IGF1 single-nucleotide polymorphism haplotype is common to all small breeds and nearly absent from giant breeds, suggesting that the same causal sequence variant is a major contributor to body size in all small dogs.

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We thank the hundreds of dog owners who contributed samples; the AKC Canine Health Foundation; S. Hoogstraten-Miller and I. Ginty for assistance at dog shows; P. Cruz for assistance with automated PCR primer designs; S. Kim for analytical assistance, and R. Pelker for assistance with blood serum assays of IGF1. Funded by the National Human Genome Research Institute (E.A.O., N.B.S., E.K., S.D., P.Q., H.G.P., and D.S.M.), the NSF (R.K.W.), NIH grant no. 5T32 HG002536 (M.M.G.), NSF grant 0516310 (C.D.B. and L.Z.), NSF grant DBI 0606461 (B.P.), NIH grant P50 HG002790 (K.Z. and M.N.), and the National Institute of General Medical Sciences 063056, the Judith Chiara Charitable Trust, and the Nestle Purina Company (K.G.L.).

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Published In

Science
Volume 316 | Issue 5821
6 April 2007

Submission history

Received: 1 November 2006
Accepted: 8 March 2007
Published in print: 6 April 2007

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Notes

Supporting Online Material
www.sciencemag.org/cgi/content/full/316/5821/112/DC1
Materials and Methods
Figs. S1 to S9
Tables S1 to S6
References

Authors

Affiliations

Nathan B. Sutter
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.
Carlos D. Bustamante
Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14850, USA.
Kevin Chase
Department of Biology, University of Utah, Salt Lake City, UT 84112, USA.
Melissa M. Gray
Department of Ecology and Environmental Biology, University of California, Los Angeles, CA 90095, USA.
Keyan Zhao
Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.
Lan Zhu
Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14850, USA.
Badri Padhukasahasram
Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14850, USA.
Eric Karlins
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.
Sean Davis
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.
Paul G. Jones
The WALTHAM Centre for Pet Nutrition, Waltham on the Wolds, Leicestershire, LE14 4RT, UK.
Pascale Quignon
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.
Gary S. Johnson
Department of Veterinary Pathobiology, University of Missouri, Columbia, MO 65211, USA.
Heidi G. Parker
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.
Neale Fretwell
The WALTHAM Centre for Pet Nutrition, Waltham on the Wolds, Leicestershire, LE14 4RT, UK.
Dana S. Mosher
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.
Dennis F. Lawler
Nestle Research Center (NRC-STL), St. Louis, MO 63164, USA.
Ebenezer Satyaraj
Nestle Research Center (NRC-STL), St. Louis, MO 63164, USA.
Magnus Nordborg
Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.
K. Gordon Lark
Department of Biology, University of Utah, Salt Lake City, UT 84112, USA.
Robert K. Wayne
Department of Ecology and Environmental Biology, University of California, Los Angeles, CA 90095, USA.
Elaine A. Ostrander* [email protected]
National Human Genome Research Institute, Building 50, Room 5349, 50 South Drive MSC 8000, Bethesda, MD 20892–8000, USA.

Notes

*
To whom correspondence should be addressed. E-mail: [email protected]

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