1 |
68→562 |
164 |
17.9 |
10.4 |
Small terminase subunit |
Hypothetical protein Z1853 (118 aa: E coli O157:H7 prophage CP-933C) |
AE005328 |
1e-10 (59) |
|
|
|
|
|
|
Hypothetical protein (159 aa; Bacteriophage GMSE-1) |
AF311659 |
1e-10 (46) |
|
|
|
|
|
|
ORF9 (122 aa; H. influenzae) |
AF198256 |
9e-10 (54) |
2 |
559→2292 |
577 |
65.3 |
5.3 |
Large terminase subunit |
YmfN (455 aa; E. coli) |
AE000214 |
0.0 (97) |
|
|
|
|
|
|
Terminase large subunit (563 aa; Pseudomonas phage D3) |
AF165214 |
e-135 (62) |
|
|
|
|
|
|
Terminase large subunit ECs1598 (553 aa; E. coli O157:H7) |
AP002555 |
7e-67 (48) |
3 |
2392→3666 |
424 |
48.3 |
7.9 |
Portal protein |
ORF25 (416 aa; Bacillus phage phi-105) |
AB016282 |
7e-51 (55) |
|
|
|
|
|
|
Phage phi-105 ORF25-like protein (ORF25 410 aa; H. influenzae) |
AF198256 |
2e-37 (50) |
|
|
|
|
|
|
Putative portal protein MIr8522 (410 aa; Mesorhizobium loti) |
AP003014 |
2e-36 (50) |
|
|
|
|
|
|
Putative portal protein ECs1592 (403 aa; E. coli O157:H7) |
AP002555 |
1e-35 (47) |
4 |
3659→4261 |
200 |
22.7 |
4.9 |
Capsid protease |
Putative phage protein STM2236 (172 aa; S. enterica serovar Typhimurium LT2) |
AE008800 |
7e-75 (90) |
|
|
|
|
|
|
Putative protease ORF209 (209 aa); Lactobacillus casei bacteriophage A2 |
AJ251790 |
5e-24 (60) |
|
|
|
|
|
|
Hypothetical protein Lin2577 (194 aa; Listeria innocua) |
AL596172 |
5e-21 (54) |
|
|
|
|
|
|
ORF41 (194 aa; phiPV83 prophage Staphylococcus aureus) |
AB044554 |
2e-20 (55) |
5 |
4272→6501 |
409 |
45.8 |
5.1 |
Capsid |
Major capsid protein GP36 (392 aa; Bacteriophage phi-C31) |
AJ006589 |
1e-14 (37) |
|
|
|
|
|
|
Hypothetical protein CC2783 (341 aa; Caulobacter crescentus) |
AE005943 |
6e-08 (38) |
|
|
|
|
|
|
Phage major capsid protein GP36 (467 aa; Mesorhizobium loti) |
AP003014 |
3e-06 (37) |
6 |
5580→5903 |
107 |
12.4 |
4.2 |
Unknown |
Hypothetical proteins Z1851 and ECs1594 (98 aa; E. coli O157:H7 prophages CP-933C and Sp7)a |
AE005328, AP0025555 |
2e-06 (48) |
7 |
6014→6310 |
98 |
11.4 |
7.9 |
Unknown |
Hypothetical protein 1752p (111 aa; Agrobacterium tumefaciens) |
AE008026 |
1e-05 (42) |
8 |
6285→6791 |
168 |
19.7 |
12.6 |
Unknown |
|
|
|
9 |
6788→7348 |
186 |
20.8 |
4.2 |
Unknown |
|
|
|
10 |
7357→7527 |
56 |
6.4 |
10.1 |
Unknown |
Gp38 (67 aa; E. coli phage Mu) |
AF083977 |
3e-06 (59) |
|
|
|
|
|
|
Putative phage protein YPO1241 (64 aa; Yersinia pestis) |
AJ414147 |
8e-06 (61) |
11 |
7511→9007 |
498 |
53.2 |
5.5 |
Tail sheath protein |
Putative phage tail sheath protein YPO1242 (502 aa; Yersinia pestis) |
AJ414147 |
e-106 (60) |
|
|
|
|
|
|
Mu-like tail sheath protein GpL (hypothetical protein HI1511, 487 aa; H. influenzae prophage) |
U32827 |
2e-80 (55) |
|
|
|
|
|
|
Tail sheath protein GpL (490 aa; E. coli phage Mu) |
AF083977 |
3e-72 (51) |
12 |
9007→9363 |
118 |
|
|
Unknown |
Hypothetical protein YPO1243 (122 aa; Yersinia pestis) |
AJ414147 |
9e-10 (48) |
13 |
9363→9632 |
89 |
|
|
Unknown |
|
|
|
14 |
9774→11609 |
611 |
65.3 |
10.0 |
Tail protein |
Hypothetical protein STY4603 (926 aa; S. enterica subsp. enterica serovar Typhi) |
AL627283 |
e-107 (56) |
|
|
|
|
|
|
OrfG (396 aa; S. enterica subsp. enterica serovar Typhi) |
AF153829 |
2e-52 (67) |
|
|
|
|
|
|
Tape measure protein (937 aa; Lactococcus lactis phage TP901-1) |
AF252967 |
5e-18 (39) |
15 |
11655→12998 |
447 |
48.5 |
5.6 |
Tail/DNA circulation protein |
DNA circulation protein (hypothetical protein HI1515; 455 aa; H. influenzae Rd prophage) |
U32827 |
2e-31 (46) |
|
|
|
|
|
|
Putative DNA circulation protein ECs4983 (456 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
3e-21 (40) |
|
|
|
|
|
|
Putative phage protein YPO1246 (468 aa; Yersinia pestis) |
AJ414147 |
2e-19 (46) |
|
|
|
|
|
|
DNA circulation protein N (64-kDa virion protein 495 aa; E. coli phage Mu) |
AF083977 |
1e-16 (39) |
16 |
12995→14074 |
359 |
39.2 |
4.9 |
Tail protein |
43-kDa tail protein P (379 aa; E. coli phage Mu) |
AF083977 |
8e-45 (50) |
|
|
|
|
|
|
Putative tail protein ECs4984 (374 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
4e-35 (44) |
|
|
|
|
|
|
Putative phage tail protein YPO1247 (351 aa; Yersinia pestis) |
AJ414147 |
2e-20 (44) |
17 |
14074→14622 |
182 |
19.6 |
6.5 |
Tail protein (15) |
Putative phage baseplate assembly protein YPO1248 (198 aa; Yersinia pestis) |
AJ414147 |
9e-17 (47) |
|
|
|
|
|
|
Hypothetical protein ECs4985 (204 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
3e-14 (45) |
|
|
|
|
|
|
Gp45 (197 aa; E. coli phage Mu) |
AF083977 |
3e-12 (43) |
18 |
14622→15047 |
141 |
16.2 |
5.9 |
Tail protein (15) |
Putative phage protein GP46 YPO1249 (151 aa; Yersinia pestis) |
AJ414147 |
2e-13 (58) |
|
|
|
|
|
|
Gp46 (145 aa; E. coli phage Mu) |
AF083977 |
7e-12 (50) |
|
|
|
|
|
|
Mu-like Gp46 protein (hypothetical protein HI1519; 135 aa; H. influenzae Rd) |
U32827 |
2e-10 (57) |
19 |
15034→16092 |
352 |
38.3 |
4.9 |
Tail protein (15) |
YmfP (hypothetical protein b1152; 263 aa; E. coli prophage e14b) |
AE000214 |
e-143 (96) |
|
|
|
|
|
|
Mu-like Gp47 protein (hypothetical protein HI1520 355 aa; H. influenzae Rd prophage) |
U32827 |
5e-40 (46) |
|
|
|
|
|
|
Hypothetical protein ECs4987 (361 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
1e-35 (43) |
|
|
|
|
|
|
Gp47 (360 aa; E. coli phage Mu) |
AF083977 |
3e-34 (44) |
20 |
16083→16667 |
194 |
21.6 |
4.9 |
Tail protein (15) |
YmfQ (hypothetical protein b1153; 194 aa; E. coli prophage e14b) |
AE000214 |
e-113 (98) |
|
|
|
|
|
|
Putative phage protein YPO1251 (115 aa; Yersinia pestis) |
AJ414147 |
1e-09 (49) |
|
|
|
|
|
|
Hypothetical protein ECs4988 (186 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
1e-08 (42) |
|
|
|
|
|
|
Hypothetical protein NMA1825 (188 aa; Neisseria meningitidis Z2491) |
AJ391256 |
4e-08 (43) |
|
|
|
|
|
|
Gp48 (180 aa; E. coli phage Mu) |
AF083977 |
2e-07 (42) |
21 |
16671→17321 |
216 |
22.6 |
5.3 |
Unknown |
Orf5′ (170 aa; S. flexneri cryptic prophage SfI) |
AF139596 |
5e-92 (95) |
|
|
|
|
|
|
YcfK (hypothetical protein b1154; 209 aa; E. coli prophage e14b) |
AE000214 |
3e-53 (64) |
|
|
|
|
|
|
YfdL (Hypothetical protein b2355; 172 aa; E. coli prophage KpLE1b) |
AE000324 |
2e-37 (74) |
|
|
|
|
|
|
Hypothetical protein Z0314 (236 aa; E. coli O157:H7 prophage CP-933H) |
AE005203 |
1e-21 (59) |
22 |
17230→17733 |
167 |
18.9 |
4.6 |
Tail fiber assembly protein |
Orf4 (167 aa; Shigella flexneri cryptic prophage SfI) |
AF139596 |
4e-85 (94) |
|
|
|
|
|
|
Hypothetical protein P37 (155 aa; phage APSE-1) |
AF157835 |
1e-18 (53) |
|
|
|
|
|
|
Hypothetical protein YcdD (106 aa; S. enterica serovar Typhimurium) |
M55342 |
2e-12 (74) |
|
|
|
|
|
|
Putative tail fiber assembly protein U (175 aa; E. coli phage Mu) |
AF083977 |
3e-12 (75) |
23 (gtrV) |
19111←17858 |
417 |
47.7 |
10.0 |
Serotype-specific glucosyltransferase (4, 26, 27) |
GtrX (416 aa; S. flexneri bacterio phage SfX) |
L05001 |
9e-66 (55) |
24 (gtrB) |
20031←19108 |
307 |
34.7 |
7.0 |
Bactoprenol glucosyl; transferase (4, 26, 27) |
GtrBII (309 aa; S. flexneri phage SfII) |
AF021347 |
e-170 (99) |
|
|
|
|
|
|
GtrBI (306 aa; S. flexneri phage SfI) |
AF139596 |
e-169 (98) |
|
|
|
|
|
|
GtrBX (305 aa; S. flexneri phage SfX) |
AF056939 |
e-167 (98) |
|
|
|
|
|
|
GtrBIV (304 aa; S. flexneri prophage SfIV) |
AF288197 |
e-163 (95) |
|
|
|
|
|
|
Hypothetical protein b2351 (306 aa; E. coli prophage KpLE1b) |
AE000323 |
e-162 (96) |
25 (gtrA) |
20390←20028 |
120 |
13.2 |
10.4 |
Flippase? (4, 26, 27) |
GtrAI (120 aa; S. flexneri phage SfI) |
AF139596 |
4e-63 (99) |
|
|
|
|
|
|
GtrAII (120 aa; S. flexneri phage SfII) |
AF021347 |
5e-63 (99) |
|
|
|
|
|
|
GtrAX (120 aa; S. flexneri phage SfX) |
AF056939 |
1e-58 (94) |
|
|
|
|
|
|
Hypothetical protein b2350 (120 aa; E. coli prophage KpLE1b) |
AE000323 |
5e-58 (93) |
26 (int) |
21815←20652 |
387 |
44.8 |
10.5 |
Integrase (4, 26, 27) |
Int (387 aa; S. enterica serovar Typhimurium phage P22) |
AF217253 |
0.0 (94) |
|
|
|
|
|
|
Putative integrase Z0307 (324 aa; E. coli O157:H7 prophage CP-933H) |
AE005202 |
e-177 (98) |
|
|
|
|
|
|
Int (387 aa; E. coli prophage DLP12) |
AE000159 |
e-168 (84) |
27 (xis) |
22041→21692 |
116 |
13.0 |
10.2 |
Excisionase (4, 26, 27) |
Xis, (116 aa; S. enterica serovar Typhimurium phage P22) |
AF217253 |
1e-51 (89) |
|
|
|
|
|
|
Xis (115 aa; E. coli strain 586) |
X16664 |
4e-18 (61) |
|
|
|
|
|
|
Xis (115 aa; S. flexneri phage SfX) |
U82084 |
3e-17 (59) |
28 |
22347←22042 |
101 |
12.1 |
4.7 |
Unknown |
Hypothetical protein b2363 (101 aa; E. coli prophage KpLE1b) |
AE000324 |
2e-51 (99) |
|
|
|
|
|
|
Hypothetical protein ECs2756 (187 aa; E. coli O157:H7) |
AP002559 |
3e-19 (78) |
|
|
|
|
|
|
Hypothetical protein ECs1518 (195 aa; E. coli O157:H7 prophage CP-933N) |
AP002555 |
3e-18 (76) |
29 |
22709←22347 |
120 |
13.7 |
4.6 |
Unknown |
Hypothetical protein b2362 (120 aa; E. coli prophage KpLE1b) |
AE000324 |
2e-66 (97) |
|
|
|
|
|
|
Hypothetical protein 1942p (226 aa; Agrobacterium tumefaciens) |
AE008035 |
2e-12 (49) |
|
|
|
|
|
|
Hypothetical protein CC1451 (250 aa; Caulobacter crescentus) |
AE005819 |
1e-11 (46) |
30 |
23236←22700 |
178 |
20.3 |
5.1 |
Unknown |
YfdR (hypothetical protein b2361 187 aa; E. coli prophage KpLE1b) |
AE000324 |
1e-98 (99) |
31 |
24188←23364 |
274 |
30.5 |
4.8 |
Unknown |
YfdQ (hypothetical protein b2360; 274 aa; E. coli prophage KpLE1b) |
AE000324 |
e-150 (99) |
|
|
|
|
|
|
Hypothetical protein XF1649 (273 aa; Xylella fastidiosa) |
AE003991 |
2e-39 (56) |
32 |
24616←24254 |
120 |
13.1 |
5.9 |
Unknown |
Hypothetical protein b2359 (148 aa; E. coli prophage KpLE1b) |
AE000324 |
1e-62 (99) |
|
|
|
|
|
|
Hypothetical protein XF1650 (124 aa; Xylella fastidiosa) |
AE003991 |
8e-17 (60) |
33 |
25513←25217 |
98 |
11.2 |
4.9 |
Unknown |
|
|
|
34 (cl) |
26360←25686 |
224 |
25.1 |
6.7 |
Repressor |
Putative repressor protein C2 (hypothetical protein b1145; 224 aa; E. coli prophage e14) |
AE000214 |
e-131 (99) |
|
|
|
|
|
|
Repressor protein cI (223 aa; Bordetella phage BP3p) |
AY029185 |
8e-22 (48) |
|
|
|
|
|
|
Repressor protein C2 (216 aa; S. enterica serovar Typhimurium phage P22) |
AF217253 |
4e-16 (53) |
35 (cro) |
26451→26651 |
66 |
7.3 |
10.1 |
Repressor |
Hypothetical protein b1146 (165 aa; E. coli prophage e14)b |
AE000214 |
9e-52 (94) |
36 |
26695→27246 |
183 |
20.1 |
4.7 |
Unknown |
YmfL (hypothetical protein b1147; 189 aa; prophage e14)b |
AE000214 |
8e-93 (93) |
|
|
|
|
|
|
Orf33 (156 aa; Pseudomonas aeruginosa phage phi CTX) |
AB008550 |
2e-04 (44) |
37 |
27243→28079 |
278 |
30.1 |
9.3 |
Immunity region |
Hypothetical protein Orf179 (179 aa; S. flexneri) |
Z23101 |
8e-15 (58) |
|
|
|
|
|
|
OrfB (118 or 119 aa; S. flexneri) |
Z23100 |
5e-11 (60) |
|
|
|
|
|
|
Putative regulator/cI repressor Z0337 and ECs0300 (185 aa; E. coli O157:H7 prophages CP-9331 and Sp2 a [P4-like]) |
AE005204 AP002551 |
1e-09 (48) |
38 |
28072→28308 |
78 |
8.9 |
11.4 |
Unknown |
|
|
|
39 |
28305→29123 |
272 |
29.3 |
8.4 |
Replication and origin |
Hypothetical protein Z1337 (400 aa; E. coli O157:H7 prophage CP-933M) |
AE005288 |
4e-28 (49) |
|
|
|
|
|
|
Hypothetical protein ECs1073 (363 aa; E. coli O157:H7) |
AP002554 |
4e-28 (49) |
|
|
|
|
|
|
YfdO (hypothetical protein b2358; 122 aa; E. coli prophage KpLE1b) |
AE000324 |
2e-07 (87) |
40 |
29126→29614 |
162 |
18.7 |
10.5 |
Unknown |
YfdM (hypothetical protein b2357; 164 aa; E. coli prophage KpLE b) |
AE000324 |
1e-86 (96) |
41 (dam) |
29614→30267 |
217 |
24.5 |
6.1 |
DNA adenine methylase (Dam) |
YfdM (hypothetical protein b2356; 102 aa; E. coli prophage KpLE1b) |
AE000324 |
4e-49 (100) |
|
|
|
|
|
|
Putative DNA methyltransferase (hypothetical protein Z3349; 175 aa; E. coli O157:H7 prophage CP-933V) |
AE005443 |
4e-05 (41) |
|
|
|
|
|
|
ORF32 (175 aa; E. coli phage VT2-Sa) |
AP000363 |
5e-05 (41) |
|
|
|
|
|
|
Gp62 (175 aa; E. coli phage HK97) |
AF069529 |
5e-05 (41) |
42 |
30264→30590 |
108 |
12.1 |
10.5 |
Regulation? |
LexA repressor (205 aa; Providencia rettgeri), other LexA proteins |
X70965 |
3e-13 (61) |
43 |
30587→30976 |
129 |
14.2 |
10.1 |
Crossover junction endodeoxy ribonuclease |
Putative crossover junction endodeoxyribonuclease Z3115 and ECs2751 (119 aa; E. coli O157:H7 prophages CP-933U and Sp14 a [lambda-like]) |
AE005421, AP002559 |
1e-16 (58) |
|
|
|
|
|
|
Putative endonuclease Z2057 and ECs1777 (119 aa; E. coli O157:H7 prophages CP-933O and Sp9 a [lambda-like]) |
AE005344 AP002556 |
3e-16 (54) |
|
|
|
|
|
|
Putative endonuclease Z6061 and ECs2268 (119 aa; E. coli O157:H7 prophages CP-933P and Sp12 a [lambda-like]) |
AE006460 AP002557 |
1e-15 (56) |
44 |
30996→31805 |
269 |
30.2 |
9.6 |
Unknown |
Phage-related protein XF2294 (242 aa; Xylella fastidiosa) |
AE004041 |
8e-12 (50) |
|
|
|
|
|
|
KilA (266 aa; E. coli phage PI) |
X15639 |
1e-10 (52) |
|
|
|
|
|
|
Unknown protein HkbK (165 aa; E. coli phage HK620) |
AF335538 |
2e-05 (46) |
45 |
31885→32802 |
305 |
34.5 |
7.4 |
Unknown |
Putative cytoplasmic protein STM2240 (329 aa; S. enterica serovar Typhimurium LT2) |
AE008800 |
e-163 (92) |
|
|
|
|
|
|
Hypothetical protein b1560 (363 aa; E. coli) |
AE000253 |
e-110 (68) |
|
|
|
|
|
|
Hypothetical protein ECs2195 (360 aa; E. coli O157:H7 prophage Sp11 a) |
AP002557 |
e-108 (68) |
|
|
|
|
|
|
Hypothetical protein Z2100 (349 aa; E. coli O157:H7 prophage CP-933O) |
AE005347 |
e-108 (68) |
46 (Q) |
32816→33568 |
250 |
27.8 |
8.9 |
Antitermination protein Q |
Putative Q protein (hypothetical protein b1559, 260 aa; E. coli prophage Qin) |
AE000253 |
e-137 (95) |
|
|
|
|
|
|
Putative Q protein Z1345 and ECs1524 (273 aa; E. coli O157:H7 prophage CP-933M and Sp8 a) |
AE005288 AP002555 |
6e-42 (54) |
|
|
|
|
|
|
Putative antitermination protein STY1036 (265 aa; S. enterica subsp. enterica serovar Typhi) |
AL627268 |
5e-34 (49) |
47 |
33818→34012 |
64 |
7.4 |
5.0 |
Unknown |
Hypothetical protein Orf2 (65 aa; E. coli phage P27) |
AJ249351 |
2e-27 (96) |
|
|
|
|
|
|
Hypothetical protein Z2059 and ECs1779 (106 aa; E. coli O157:H7 prophages CP-933O and Sp9 a) |
AE005344 AP002556 |
4e-27 (97) |
|
|
|
|
|
|
Hypothetical protein Z2103 and ECs2192 (94/65 aa; E. coli O157:H7 prophages CP-933O and Sp1)a |
AE005347 AP002557 |
3e-26 (96) |
48 |
34162→35214 |
350 |
40.3 |
8.6 |
Unknown |
Putative Dam methylase Z2060 and ECs1780 (352 aa; E. coli O157:H7 prophage CP-933O and Sp9)a |
AE005344 AP002556 |
1e-172 (90) |
|
|
|
|
|
|
Hypothetical protein Orf3 (312 aa; E. coli phage P27) |
AJ249351 |
e-155 (90) |
|
|
|
|
|
|
Putative Dam methylase Gp52 (284 aa; E. coli phage N15) |
AF064539 |
7e-81 (70) |
49 (S) |
35291→35626 |
111 |
11.9 |
10.1 |
Holin |
Putative bacteriophage protein STY2045 (113 aa; S. enterica subsp. enterica serovar Typhi) |
AL627272 |
1e-53 (94) |
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Putative inner membrane protein STM2237 (109 aa; S. enterica serovar Typhimurium LT2) |
AE008800 |
4e-37 (94) |
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Fels-1 prophage protein STM0906 (114 aa; S. enterica serovar Typhimurium LT2) |
AE008738 |
3e-26 (65) |
50 (R) |
35630→36106 |
158 |
17.7 |
10.0 |
Lysin |
Putative endolysin STY2044 (158 aa; S. enterica subsp. enterica serovar Typhi) |
AL627272 |
1e-85 (97) |
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Putative endolysin Z1876 and ECs1622 (158 aa; E. coli O157:H7 prophages CP-933X and Sp8)a |
AE005330 AP002555 |
1e-80 (94) |
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Lysin (158 aa; E. coli phage HK97) |
AF069529 |
3e-79 (93) |
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Lysin (158 aa; E. coli phage HK022) |
AF069308 |
4e-79 (93) |
51 (Rz) |
36090→36482 |
130 |
14.5 |
9.2 |
Lysis |
Putative phage protein STY2043 (130 aa; Salmonella enterica subsp. enterica serovar Typhi) |
AL627272 |
2e-53 (87) |
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Gp23 (119 aa; E. coli phage Mu) |
AF083977 |
3e-06 (46) |
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Putative protein P14 (129 aa; phage APSE-1) |
AF157835 |
2e-04 (44) |
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Hypothetical protein ECs4963 (85 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
0.005 (44) |
52 (Rzl) |
36301→36639 |
112 |
12.4 |
10.6 |
Lysis |
Putative protein P16 (109 aa; phage APSE-1) |
AF157835 |
6e-16 (66) |
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Hypothetical protein ECs4964 (148 aa; E. coli O157:H7 prophage Sp16a [Mu-like]) |
AP002567 |
3e-13 (54) |
53 |
36666→37016 |
116 |
13.1 |
10.7 |
Unknown |
Hypothetical protein Orf7 (116 aa; Xenorhabdus nematophilus) |
AJ133022 |
1e-37 (70) |
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Hypothetical protein 19 (124 aa; Bacillus phage Phi-105) |
AB016282 |
2e-12 (47) |