Mingjian Shi

Lck is a Src family protein tyrosine kinase and is expressed predominantly in T cells. Aberrant expression or activation of Lck kinase has been reported in both lymphoid and nonlymphoid malignancies. However, the mechanisms underlying Lck-mediated oncogenesis remain largely unclear. In this report, we establish a tetracycline-inducible system to study the biochemical and biological effects of a constitutively active Lck mutant with a point mutation at the negative regulatory tyrosine. Expression of the active Lck kinase induces both tyrosine phosphorylation and DNA-binding activity of signal transducer and activator of transcription 5b (STAT5b), a STAT family member activated in a variety of tumor cells. The active Lck kinase interacts with STAT5b in cells, suggesting that Lck may directly phosphorylate STAT5b. Expression of the constitutively active Lck mutant in interleukin-3 (IL-3)–dependent BaF3 cells promotes cell proliferation. In addition, the active Lck kinase protects BaF3 ...

Human genetic variation associates with the composition of the gut microbiome, yet its influence on clinical traits remains largely unknown. We analyzed the consequences of nearly a thousand gut microbiome-associated variants (MAVs) on phenotypes reported in electronic health records from tens of thousands of individuals. We discovered and replicated associations of MAVs with neurological, metabolic, digestive, and circulatory diseases. Five significant MAVs in these categories correlate with the relative abundance of microbes down to the strain level. We also demonstrate that these relationships are independently observed and concordant with microbe by disease associations reported in case–control studies. Moreover, a selective sweep and population differentiation impacted some disease-linked MAVs. Combined, these findings establish triad relationships among the human genome, microbiome, and disease. Consequently, human genetic influences may offer opportunities for precision diagn...

Lysophosphatidylcholine (LPC) and 7-ketocholesterol (7-KC) are two key components of oxidized low-density lipoprotein (oxLDL) and have been shown to injure endothelial cells derived from various species. This report examines LPC- and 7-KC-induced cell death in mouse aorta endothelial cells (MAECs). The presence and the mechanism of cell death were assessed with morphological criteria, Hoechst 33342 and propidium iodide fluorescence staining, and caspase-3 activity. The authors observed that 7-KC induced cell shrinkage, nuclear condensation, and caspase-3 activity. In contrast, LPC induced membrane rupture, nuclear expansion, and cell lysis. In addition, 7-KC induced a transient increase, whereas LPC induced a sustained increase in intracellular Ca2+ levels and production of reactive oxygen species (ROS). Antioxidants and calcium antagonists attenuated both 7-KC- and LPC-induced cell death. These findings suggest that 7-KC and LPC injure MAECs through differential mechanisms; LPC induces necrosis, 7-KC induces apoptosis, and the increase in intracellular Ca2+ levels and production of ROS are common mechanisms for these cytotoxic injuries.

Oxidative stress has been suggested to potentiate atherogenesis. However, studies that have investigated the effect of antioxidants on atherosclerosis showed inconsistent results, ie, atherosclerosis was either retarded or not changed by dietary antioxidants. This report directly examined the effect of overexpressing Cu/Zn-superoxide dismutase (Cu/Zn-SOD) and/or catalase on atherosclerosis and lipid peroxidation in mice lacking apolipoprotein E ( ApoE −/− ). Based on lipid staining of the en face of the aorta tree and the serial sections of the proximal aorta, ApoE −/− mice overexpressing catalase or both Cu/Zn-SOD and catalase had smaller and relatively early stages of atherosclerotic lesions (eg, foam cells and free lipids) when compared with ApoE −/− mice, who developed more advanced lesions (eg, fibrous caps and acellular areas). In addition, the retarded development of atherosclerosis was correlated with a reduced F 2 -isoprostanes in the plasma and aortas in ApoE −/− mice over...

Importance Thyroid hormone levels are tightly regulated through feedback inhibition by thyrotropin, produced by the pituitary gland. Hyperthyroidism is overwhelmingly due to thyroid disorders and is well recognized to contribute to a wide spectrum of cardiovascular morbidity, particularly the increasingly common arrhythmia atrial fibrillation (AF). Objective To determine the association between genetically determined thyrotropin levels and AF. Design, Setting, and Participants This phenome-wide association study scanned 1318 phenotypes associated with a polygenic predictor of thyrotropin levels identified by a previously published genome-wide association study that included participants of European ancestry. North American individuals of European ancestry with longitudinal electronic health records were analyzed from May 2008 to November 2016. Analysis began March 2018. Main Outcomes and Measures Clinical diagnoses associated with a polygenic predictor of thyrotropin levels. Exposures Genetically determined thyrotropin levels. Results Of 37 154 individuals, 19 330 (52%) were men. The thyrotropin polygenic predictor was positively associated with hypothyroidism (odds ratio [OR], 1.10; 95% CI, 1.07-1.14; P = 5 × 10−11) and inversely associated with diagnoses related to hyperthyroidism (OR, 0.64; 95% CI, 0.54-0.74; P = 2 × 10−8 for toxic multinodular goiter). Among nonthyroid associations, the top association was AF/flutter (OR, 0.93; 95% CI, 0.9-0.95; P = 9 × 10−7). When the analyses were repeated excluding 9801 individuals with any diagnoses of a thyroid-related disease, the AF association persisted (OR, 0.91; 95% CI, 0.88-0.95; P = 2.9 × 10−6). To replicate this association, we conducted an inverse-variance weighted average meta-analysis using AF single-nucleotide variant weights from a genome-wide association study of 17 931 AF cases and 115 142 controls. As in the discovery analyses, each SD increase in predicted thyrotropin was associated with a decreased risk of AF (OR, 0.86; 95% CI, 0.79-0.93; P = 4.7 × 10−4). In a set of AF cases (n = 745) and controls (n = 1680) older than 55 years, directly measured thyrotropin levels that fell within the normal range were inversely associated with AF risk (OR, 0.91; 95% CI, 0.83-0.99; P = .04). Conclusions and Relevance This study suggests a role for genetically determined variation in thyroid function within a physiologically accepted normal range as a risk factor for AF. The clinical decision to treat subclinical thyroid disease should incorporate the risk for AF as antithyroid medications to treat hyperthyroidism may reduce AF risk and thyroid hormone replacement for hypothyroidism may increase AF risk.

Background: The etiological mechanisms accounting for epidemiological associations between biomarkers and cardiovascular diseases (CVD) are often poorly defined. One example is the metabolite kynurenine, which has been associated with diverse inflammatory-related disease including CVD. We leveraged genetic approaches to elucidate the underlying mechanisms and possible causal relationships accounting for the kynurenine-CVD association. Methods: In this phenome-wide association study (PheWAS), we identified genetic predictors of plasma kynurenine from published genome-wide association studies. We explored associations between both the individual variants and a kynurenine polygenic risk score (PRS) and diseases including heart disease, atherosclerosis, and myocardial infarction in genotyped populations including UK Biobank (n= 456422), Vanderbilt BioVU (n=62,303) and Electronic Medical Records and Genetics (eMERGE) (n=32,324). We applied both single-variant and multi-variant approaches...

Dendritic spines are actin-rich protrusions that establish excitatory synaptic contacts with surrounding neurons. Reorganization of the actin cytoskeleton is critical for the development and plasticity of dendritic spines, which is the basis for learning and memory. Rho family GTPases are emerging as important modulators of spines and synapses, predominantly through their ability to regulate actin dynamics. Much less is known, however, about the function of GEFs, which activate these GTPases, in spine and synapse development. In this study, we show that the Rho family GEF Asef2 is found at synaptic sites, where it promotes dendritic spine and synapse formation. Knockdown of endogenous Asef2 with shRNAs impairs spine and synapse formation, while exogenous expression of Asef2 causes an increase in spine and synapse density. This effect of Asef2 on spines and synapses is abrogated by expression of GEF-activity-deficient Asef2 mutants or by knockdown of Rac, suggesting that Asef2-Rac si...