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Methyl-coenzyme M reductase and other enzymes involved in methanogenesis from CO2 and H2 in the extreme thermophile Methanopyrus kandleri

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Abstract

Methanopyrus kandleri belongs to a novel group of abyssal methanogenic archaebacteria that can grow at 110°C on H2 and CO2 and that shows no close phylogenetic relationship to any methanogen known so far. Methyl-coenzyme M reductase, the enzyme catalyzing the methane forming step in the energy metabolism of methanogens, was purified from this hyperthermophile. The yellow protein with an absorption maximum at 425 nm was found to be similar to the methyl-coenzyme M reductase from other methanogenic bacteria in that it was composed each of two α-, β- and γ-subunits and that it contained the nickel porphinoid coenzyme F430 as prosthetic group. The purified reductase was inactive. The N-terminal amino acid sequence of the γ-subunit was determined. A comparison with the N-terminal sequences of the γ-subunit of methyl-coenzyme M reductases from other methanogenic bacteria revealed a high degree of similarity.

Besides methyl-coenzyme M reductase cell extracts of M. kandleri were shown to contain the following enzyme activities involved in methanogenesis from CO2 (apparent Vmax at 65°C): formylmethanofuran dehydrogenase, 0.3 U/mg protein; formyl-methanofuran: tetrahydromethanopterin formyltransferase, 13 U/mg; N 5,N10-methenyltetrahydromethanopterin cyclohydrolase, 14 U/mg; N 5,N10-methylenetetrahydromethanopterin dehydrogenase (H2-forming), 33 U/mg; N 5,N10-methylenetetrahydromethanopterin reductase (coenzyme F420 dependent), 4 U/mg; heterodisulfide reductase, 2 U/mg; coenzyme F420-reducing hydrogenase, 0.01 U/mg; and methylviologen-reducing hydrogenase, 2.5 U/mg. Apparent Km values for these enzymes and the effect of salts on their activities were determined.

The coenzyme F420 present in M. kandleri was identified as coenzyme F420-2 with 2 γ-glutamyl residues.

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Abbreviations

H−S-CoM:

coenzyme M

CH3−S-CoM:

methylcoenzyme M

H−S-HTP:

7-mercaptoheptanoylthreonine phosphate

MFR:

methanofuran

CHO-MFR:

formyl-MFR

H4MPT:

tetrahydromethanopterin

CHO−H4MPT:

N 5-formyl-H4MPT

CH=H4MPT+ :

N 5,N10-methenyl-H4MPT

CH2=H4MPT:

N 5,N10-methylene-H4MPT

CH3−H4MPT:

N 5-methyl-H4MPT

F420 :

coenzyme F420

1 U=:

1 μmol/min

References

  • Ankel-Fuchs D, Jaenchen R, Gebhardt NA, Thauer RK (1984) Functional relationship between protein-bound and free factor F430 in Methanobacterium. Arch Microbiol 139: 332–337

    Google Scholar 

  • Bio-Rad Laboratories (1981) Instruction manual for Bio-Rad protein assay. Bio-Rad Laboratories, Richmond, CA

    Google Scholar 

  • Börner G (1988) Isolierung von vier Coenzymen der Methanogenese aus Methanobacterium thermoautotrophicum. Diploma thesis, Marburg

  • Börner G, Karrasch M, Thauer RK (1989) Formylmethanofuran dehydrogenase activity in cell extracts of Methanobacterium thermoautotrophicum and of Methanosarcina barkeri. FEBS Lett 244:21–25

    Google Scholar 

  • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Google Scholar 

  • Breitung J, Thauer RK (1990) Formylmethanofuran:tetrahydromethanopterin formyltransferase from Methanosarcina barkeri: Identification of N 5-formyltetrahydromethanopterin as the product. FEBS Lett 275:226–230

    Google Scholar 

  • Breitung J, Börner G, Karrasch M, Berkessel A, Thauer RK (1990) N-Furfurylformamide as a pseudo-substrate for formylmethanofuran converting enzymes from methanogenic bacteria. FEBS Lett 268:257–260

    Google Scholar 

  • Diekert G, Konheiser U, Piechulla K, Thauer RK (1981) Nickel requirement and factor F430 content of methanogenic bacteria. J Bacteriol 148:459–464

    Google Scholar 

  • DiMarco AA, Bobik TA, Wolfe RS (1990) Unusual coenzymes of methanogenesis. Annu Rev Biochem 59:355–394

    Google Scholar 

  • Donnelly MI, Wolfe RS (1986) The role of formylmethanofuran: tetrahydromethanopterin formyltransferase in methanogenesis from carbon dioxide. J Biol Chem 261:16653–16659

    Google Scholar 

  • Eirich LD, Vogels GD, Wolfe RS (1978) Proposed structure for coenzyme F420 from Methanobacterium. Biochemistry 17:4583–4593

    Google Scholar 

  • Eirich LD, Vogels GD, Wolfe RS (1979) Distribution of coenzyme F420 and properties of its hydrolytic fragments. J Bacteriol 140:20–27

    Google Scholar 

  • Ellermann J, Hedderich R, Böcher R, Thauer RK (1988) The final step in methane formation. Investigations with highly purified methyl-CoM reductase (component C) from Methanobacterium thermoautotrophicum (strain Marburg). Eur J Biochem 172:669–677

    Google Scholar 

  • Ellermann J, Rospert S, Thauer RK, Bokranz M, Klein A, Voges M, Berkessel A (1989) Methyl-coenzyme-M reductase from Methanobacterium thermoautotrophicum (strain Marburg). Purity, activity and novel inhibitors. Eur J Biochem 184:63–68

    Google Scholar 

  • Enßle M, Zirngibl C, Linder D, Thauer RK (1991) Coenzyme F420 dependent N 5,N10-methylenetetrahydromethanopterin dehydrogenase in methanol grown Methanosarcina barkeri. Arch Microbiol 155:483–490

    Google Scholar 

  • Friedmann HC, Klein A, Thauer RK (1990) Structure and function of the nickel porphinoid, coenzyme F430, and of its enzyme, methyl coenzyme M reductase. FEMS Microbiol Rev 87:339–348

    Google Scholar 

  • Gorris LGM, van derDrift C, Vogels GD (1988) Separation and quantification of cofactors from methanogenic bacteria by highperformance liquid chromatography: optimum and routine analyses. J Microbiol Methods 8: 175–190

    Google Scholar 

  • Graf E-G, Thauer RK (1981) Hydrogenase from Methanobacterium thermoautotrophicum, a nickel-containing enzyme. FEBS Lett 136:165–169

    Google Scholar 

  • Hartzell PL, Escalante-Semerena JC, Bobik TA, Wolfe RS (1988) A simplified methylcoenzyme M methylreductase assay with artificial electron donors and different preparations of component C from Methanobacterium thermoautotrophicum ΔH. J Bacteriol 170:2711–2715

    Google Scholar 

  • Hedderich R, Berkessel A, Thauer RK (1989) Catalytic properties of the heterodisulfide reductase involved in the final step of methanogenesis. FEBS Lett 255:67–71

    Google Scholar 

  • Hedderich R, Berkessel A, Thauer RK (1990) Purification and properties of heterodisulfide (CoM-S-S-HTP) reductase from Methanobacterium thermoautotrophicum (strain Marburg). Eur J Biochem 193:255–261

    Google Scholar 

  • Hensel R, König H (1988) Thermoadaptation of methanogenic bacteria by intracellular ion concentration. FEMS Microbiol Lett 49:75–79

    Google Scholar 

  • Hewick RM, Hunkapiller MW, Hood LE, Dreyer WJ (1981) A gasliquid solid phase peptide and protein sequenator. J Biol Chem 256:7990–7997

    Google Scholar 

  • Huber R, Kurr M, Jannasch HW, Stetter KO (1989) A novel group of abyssal methanogenic archaebacteria (Methanopyrus) growing at 110°C. Nature 342:833–834

    Google Scholar 

  • Karrasch M, Börner G, Enßle M, Thauer RK (1989) Formylmethanofuran dehydrogenase from methanogenic bacteria, a molybdoenzyme. FEBS Lett 253:226–230

    Google Scholar 

  • Karrasch M, Börner G, Enßle M, Thauer RK (1990) The molybdoenzyme formylmethanofuran dehydrogenase from Methanosarcina barkeri contains a pterin cofactor. Eur J Biochem 194:367–372

    Google Scholar 

  • Klein A, Allmansberger R, Bokranz M, Knaub S, Müller B, Muth E (1988) Comparative analysis of genes encoding methyl coenzyme M reductase in methanogenic bacteria. Mol Gen Genet 213:409–420

    Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    Google Scholar 

  • Lin X-L, White RH (1986) Occurrence of coenzyme F420 and its-monoglutamyl in nonmethanogenic archaebacteria. J Bacteriol 168:444–448

    Google Scholar 

  • Ma K, Thauer RK (1990a) Purification and properties of N 5,N10-methylenetetrahydromethanopterin reductase from Methanobacterium thermoautotrophicum (strain Marburg). Eur J Biochem 191:187–193

    Google Scholar 

  • Ma K, Thauer RK (1990b) N 5,N10-methylenetetrahydromethanopterin reductase from Methanosarcina barkeri. FEMS Microbiol Lett 70:119–124

    Google Scholar 

  • Peck MW, Archer DB (1987) Improved assay of coenzyme F420 analogues from methanogenic bacteria. Biotechn Techn 1:279–284

    Google Scholar 

  • Pfaltz A, Jaun B, Fässler A, Eschenmoser A, Jaenchen R, Gilles HH, Diekert G, Thauer RK (1982) Zur Kenntnis des Faktors F430 aus methanogenen Bakterien: Struktur des porphinoiden Ligandsystems. Helv Chim Acta 65:828–865

    Google Scholar 

  • Rospert S, Linder D, Ellermann J, Thauer RK (1990) Two genetically distinct methyl-coenzyme M reductases in Methanobacterium thermoautotrophicum strain Marburg and ΔH. Eur J Biochem 194:871–877

    Google Scholar 

  • Rouvière PE, Bobik TA, Wolfe RS (1988) Reductive activation of the methyl coenzyme M methylreductase system of Methanobacterium thermoautotrophicum δH. J Bacteriol 170:3946–3952

    Google Scholar 

  • Sastry MVK, Robertson DE, Moynihan JA, Roberts MF (1990) 2,3-Diphosphoglycerate is the product of cyclo-2,3-diphosphoglycerate degradation in Methanobacterium thermoautotrophicum. Biochemistry (in press)

  • Schönheit P, Keweloh H, Thauer RK (1981) Factor F420 degradation in Methanobacterium thermoautotrophicum during exposure to oxygen. FEMS Microbiol Lett 12:347–349

    Google Scholar 

  • Schwörer B, Thauer RK (1991) Activities of formylmethanofuran dehydrogenase, methylenetetrahydromethanopterin dehydrogenase, methylenetetrahydromethanopterin reductase, and heterodisulfide reductase in methanogenic bacteria. Arch Microbiol 155:459–465

    Google Scholar 

  • Thauer RK (1990) Energy metabolism of methanogenic bacteria. Biochim Biophys Acta 1018:256–259

    Google Scholar 

  • Weil CF, Sherf BA, Reeve JN (1989) A comparison of the methyl reductase genes and gene products. Can J Microbiol 35:101–108

    Google Scholar 

  • Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains archaea, bacteria, and eucarya. Proc Natl Acad Sci USA 87:4576–4579

    Google Scholar 

  • Zirngibl C, Hedderich R, Thauer RK (1990) N 5,N10-methylenetrahydromethanopterin dehydrogenase from Methanobacterium thermoautotrophicum has hydrogenase activity. FEBS Lett 261:112–116

    Google Scholar 

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Rospert, S., Breitung, J., Ma, K. et al. Methyl-coenzyme M reductase and other enzymes involved in methanogenesis from CO2 and H2 in the extreme thermophile Methanopyrus kandleri . Arch. Microbiol. 156, 49–55 (1991). https://doi.org/10.1007/BF00418187

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  • DOI: https://doi.org/10.1007/BF00418187

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