Reciprocal binding of PARP-1 and histone H1 at promoters specifies transcriptional outcomes

Science. 2008 Feb 8;319(5864):819-21. doi: 10.1126/science.1149250.

Abstract

Nucleosome-binding proteins act to modulate the promoter chromatin architecture and transcription of target genes. We used genomic and gene-specific approaches to show that two such factors, histone H1 and poly(ADP-ribose) polymerase-1 (PARP-1), exhibit a reciprocal pattern of chromatin binding at many RNA polymerase II-transcribed promoters. PARP-1 was enriched and H1 was depleted at these promoters. This pattern of binding was associated with actively transcribed genes. Furthermore, we showed that PARP-1 acts to exclude H1 from a subset of PARP-1-stimulated promoters, suggesting a functional interplay between PARP-1 and H1 at the level of nucleosome binding. Thus, although H1 and PARP-1 have similar nucleosome-binding properties and effects on chromatin structure in vitro, they have distinct roles in determining gene expression outcomes in vivo.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Chromatin / metabolism*
  • Chromatin Immunoprecipitation
  • Gene Expression Regulation*
  • Histones / metabolism*
  • Humans
  • Nucleosomes / metabolism
  • Oligonucleotide Array Sequence Analysis
  • Poly (ADP-Ribose) Polymerase-1
  • Poly(ADP-ribose) Polymerases / genetics
  • Poly(ADP-ribose) Polymerases / metabolism*
  • Promoter Regions, Genetic*
  • Protein Binding
  • RNA Polymerase II / metabolism
  • Transcription, Genetic*

Substances

  • Chromatin
  • Histones
  • Nucleosomes
  • PARP1 protein, human
  • Poly (ADP-Ribose) Polymerase-1
  • Poly(ADP-ribose) Polymerases
  • RNA Polymerase II