 |
 |
GEO help: Mouse over screen elements for information.
|
|
|
| Status |
Public on Sep 13, 2012 |
| Title |
Broad_ChipSeq_K562_SAP30_(39731) |
| Sample type |
SRA |
| |
|
| Source name |
K562
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: This SAP30 antibody (pAb) was raised against recombinant full length human SAP30 protein. Antibody Target: SAP30
antibody targetdescription: SAP30, also known asSin3A-associated protein, 30kDa, is part of the SIN3 corepressor complex, that also includes SIN3, SAP18,HDAC1,HDAC2,RbAp46andRbAp48. SAP30 is involved in the functional recruitment of the Sin3-histone deacetylase complex to a specific subset of N-CoR corepressor complexes.
antibody vendorname: Active Motif
antibody vendorid: 39731
controlid: wgEncodeEH000052
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: SAP30_(39731)
antibody antibodydescription: This SAP30 antibody (pAb) was raised against recombinant full length human SAP30 protein. Antibody Target: SAP30
antibody targetdescription: SAP30, also known asSin3A-associated protein, 30kDa, is part of the SIN3 corepressor complex, that also includes SIN3, SAP18,HDAC1,HDAC2,RbAp46andRbAp48. SAP30 is involved in the functional recruitment of the Sin3-histone deacetylase complex to a specific subset of N-CoR corepressor complexes.
antibody vendorname: Active Motif
antibody vendorid: 39731
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: K562/Input/std
softwareversion: ScriptureVPaperR3
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Growth protocol |
K562_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (2) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX186641 |
| BioSample |
SAMN01174057 |
| Named Annotation |
GSM1003445_hg19_wgEncodeBroadHistoneK562Sap3039731StdSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1003445_hg19_wgEncodeBroadHistoneK562Sap3039731StdPk.broadPeak.gz |
3.4 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1003445_hg19_wgEncodeBroadHistoneK562Sap3039731StdSig.bigWig |
328.6 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
