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Sample GSM1003449 Query DataSets for GSM1003449
Status Public on Sep 13, 2012
Title Broad_ChipSeq_K562_RBBP5_(A300-109A)
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: RBBP5
antibody targetdescription: Retinoblastoma binding protein 5 (RbBP5) is a subunit of a human Set1-like histone methyltransferase (HMT) complex. The Set-1 like complexes are responsible for mono-, di-, and tri-methylation of histone H3 K4. RbBP5 associates with a multitude of proteins in a number of Set1-like complexes which include various combinations of MLL, MLL2, MLL3, MLL4, ASH2L,WDR5, hDPY-30, hSwd2, CXXC1, HCF1, Menin, PTIP, PA1, NCOA6, and UTX. RbBP5 is also one of many proteins that bind the Retinoblastoma tumor suppressor protein, pRb. Alternate names for RbBP5 are RBQ3 and SWD1.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A300-109A
controlid: wgEncodeEH000052
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: RBBP5_(A300-109A)
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: RBBP5
antibody targetdescription: Retinoblastoma binding protein 5 (RbBP5) is a subunit of a human Set1-like histone methyltransferase (HMT) complex. The Set-1 like complexes are responsible for mono-, di-, and tri-methylation of histone H3 K4. RbBP5 associates with a multitude of proteins in a number of Set1-like complexes which include various combinations of MLL, MLL2, MLL3, MLL4, ASH2L,WDR5, hDPY-30, hSwd2, CXXC1, HCF1, Menin, PTIP, PA1, NCOA6, and UTX. RbBP5 is also one of many proteins that bind the Retinoblastoma tumor suppressor protein, pRb. Alternate names for RbBP5 are RBQ3 and SWD1.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A300-109A
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: K562/Input/std
softwareversion: ScriptureVPaperR3
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX186645
BioSample SAMN01174061
Named Annotation GSM1003449_hg19_wgEncodeBroadHistoneK562Rbbp5a300109aStdSig.bigWig

Supplementary file Size Download File type/resource
GSM1003449_hg19_wgEncodeBroadHistoneK562Rbbp5a300109aStdPk.broadPeak.gz 2.2 Mb (ftp)(http) BROADPEAK
GSM1003449_hg19_wgEncodeBroadHistoneK562Rbbp5a300109aStdSig.bigWig 424.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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