|
Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_K562_NSD2_(ab75359) |
Sample type |
SRA |
|
|
Source name |
K562
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: mouse monoclonal, raised against a fusion protein, corresponding to amino acids 1-647 of Human GST-WHSC1/NSD2.
antibody targetdescription: This is a probable histone methyltransferase, which may act as a transcription regulator that binds DNA and suppresses IL5 transcription.
antibody vendorname: abcam
antibody vendorid: ab75359
controlid: wgEncodeEH000052
replicate: 1
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: NSD2_(ab75359)
antibody antibodydescription: mouse monoclonal, raised against a fusion protein, corresponding to amino acids 1-647 of Human GST-WHSC1/NSD2.
antibody targetdescription: This is a probable histone methyltransferase, which may act as a transcription regulator that binds DNA and suppresses IL5 transcription.
antibody vendorname: Abcam
antibody vendorid: ab75359
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: K562/None/Input/std
labversion: Illumina_GA2x
labversion description: Illumina Genome Analyzer IIx
softwareversion: ScriptureVPaperR3
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
K562_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL10999 |
Series (2) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX186688 |
BioSample |
SAMN01174104 |
Named Annotation |
GSM1003492_hg19_wgEncodeBroadHistoneK562Nsd2ab75359Sig.bigWig |