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GEO help: Mouse over screen elements for information.
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| Status |
Public on Sep 28, 2012 |
| Title |
HudsonAlpha_ChipSeq_K562_TRIM28_(SC-81411)_v042211.1 |
| Sample type |
SRA |
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| Source name |
K562
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| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Mouse monoclonal IgG, raised against a recombinant protein corresponding to an internal region of TRIM28 of human origin. Antibody Target: TRIM28
antibody targetdescription: The protein encoded by this gene mediates transcriptional control by interaction with the Kruppel-associated box repression domain found in many transcription factors. The protein localizes to the nucleus and is thought to associate with specific chromatin regions. The protein is a member of the tripartite motif family. This tripartite motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-81411
controlid: SL6023
labexpid: SL9830,SL8672
softwareversion: MACS
cell sex: F
antibody: TRIM28_(SC-81411)
antibody antibodydescription: Mouse monoclonal IgG, raised against a recombinant protein corresponding to an internal region of TRIM28 of human origin. Antibody Target: TRIM28
antibody targetdescription: The protein encoded by this gene mediates transcriptional control by interaction with the Kruppel-associated box repression domain found in many transcription factors. The protein localizes to the nucleus and is thought to associate with specific chromatin regions. The protein is a member of the tripartite motif family. This tripartite motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-81411
treatment: None
treatment description: No special treatment or protocol applies
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL6023
labexpid: SL9830,SL8672
replicate: 1,2
softwareversion: MACS
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| Biomaterial provider |
ATCC
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| Treatment protocol |
None
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| Growth protocol |
K562_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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| Submission date |
Sep 28, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (2) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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| Relations |
| SRA |
SRX190305 |
| BioSample |
SAMN01731734 |
| Named Annotation |
GSM1010849_hg19_wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep1.bigWig |
| Named Annotation |
GSM1010849_hg19_wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1010849_hg19_wgEncodeHaibTfbsK562Trim28sc81411V0422111PkRep1.broadPeak.gz |
254.5 Kb |
(ftp)(http) |
BROADPEAK |
| GSM1010849_hg19_wgEncodeHaibTfbsK562Trim28sc81411V0422111PkRep2.broadPeak.gz |
73.8 Kb |
(ftp)(http) |
BROADPEAK |
| GSM1010849_hg19_wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep1.bigWig |
283.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM1010849_hg19_wgEncodeHaibTfbsK562Trim28sc81411V0422111RawRep2.bigWig |
86.0 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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