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Sample GSM2172 Query DataSets for GSM2172
Status Public on Jun 27, 2002
Title K-562 (CL7005) LEUKEMIA
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name K-562 (CL7005) LEUKEMIA
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp1215
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1656 259 1242 50 1192 1779 74 1853 .646 0 -1.807 11 5 5.18 3.5 .193 .286 .553 18 26 59 67 -1.807
2 1648 928 1953 777 1176 1755 1159 2914 .911 0 .321 38 42 1.194 .801 .837 1.249 .731 18 26 67 75 .321
3 1632 98 1289 113 1176 1755 168 1923 .178 0 .778 0 9 .867 .583 1.153 1.714 .175 18 26 76 84 .778
4 1624 50 1341 165 1176 1755 246 2001 .212 0 2.299 0 13 .303 .203 3.3 4.92 .234 18 26 85 93 2.299
5 1616 899 2687 1519 1168 1743 2267 4010 .889 0 1.334 40 51 .592 .397 1.69 2.522 1.441 18 26 94 102 1.334
6 1608 135 1112 -56 1168 1743 -84 1659 -.015 0 1 0 -.415 -.01 18 26 102 110
7 1600 2273 2121 961 1160 1731 1434 3165 .902 0 -.665 50 46 2.365 1.585 .423 .631 .404 18 26 111 119 -.665
8 1608 1252 7675 6515 1160 1731 9724 11455 .925 0 2.957 48 61 .192 .129 5.204 7.767 4.701 18 26 120 128 2.957
9 1600 21 1271 127 1144 1707 190 1897 .298 0 3.178 0 3 .165 .111 6.048 9.048 .707 18 26 129 137 3.178
10 1608 535 1380 236 1144 1707 352 2059 .488 0 -.604 32 19 2.267 1.52 .441 .658 .426 18 26 137 145 -.604
11 1608 270 1212 68 1144 1707 101 1808 .353 0 -1.419 9 1 3.971 2.673 .252 .374 .436 19 27 146 154 -1.419
12 1608 342 1336 184 1152 1719 275 1994 .394 0 -.315 17 9 1.859 1.244 .538 .804 .419 19 27 155 163 -.315
13 1600 44 1115 -29 1144 1707 -43 1664 .143 0 0 0 -.659 .228 19 27 164 172
14 1600 1706 1844 708 1136 1695 1057 2752 .926 0 -.691 50 46 2.41 1.614 .415 .62 .405 19 27 173 181 -.691
15 1600 165 1166 46 1120 1671 69 1740 .171 0 -1.258 1 7 3.587 2.391 .279 .418 .195 19 27 181 189 -1.258
16 1600 62 1196 76 1120 1671 114 1785 -.114 0 .879 0 0 .816 .544 1.226 1.839 -.156 19 27 190 198 .879
17 1608 16 1112 -8 1120 1671 -12 1659 .036 0 0 0 -.5 .041 19 27 199 207
18 1616 18 1122 -6 1128 1683 -9 1674 .084 0 0 0 -.333 .115 19 27 208 216
19 1616 303 1163 19 1144 1707 28 1735 .118 0 -3.436 3 0 15.947 10.821 .063 .092 .085 19 27 216 224 -3.436
20 1608 300 1220 84 1136 1695 125 1820 .152 0 -1.263 9 0 3.571 2.4 .28 .417 .098 19 27 225 233 -1.263

Total number of rows: 9984

Table truncated, full table size 1065 Kbytes.




Supplementary data files not provided

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