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Sample GSM733719 Query DataSets for GSM733719
Status Public on Jun 02, 2011
Title Bernstein_K562_CTCF
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell lineage: mesoderm
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000052
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider ATCC
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSM936088
SRA SRX067470
BioSample SAMN00622140
Named Annotation GSM733719_hg19_wgEncodeBroadHistoneK562CtcfStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733719_hg19_wgEncodeBroadHistoneK562CtcfStdAlnRep1.bam 588.6 Mb (ftp)(http) BAM
GSM733719_hg19_wgEncodeBroadHistoneK562CtcfStdAlnRep2.bam 433.2 Mb (ftp)(http) BAM
GSM733719_hg19_wgEncodeBroadHistoneK562CtcfStdPk.broadPeak.gz 1.3 Mb (ftp)(http) BROADPEAK
GSM733719_hg19_wgEncodeBroadHistoneK562CtcfStdSig.bigWig 336.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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