|
|
| Status |
Public on Jun 29, 2011 |
| Title |
Stam_Caco-2_Input_1 |
| Sample type |
SRA |
| |
|
| Source name |
Caco-2
|
| Organism |
Homo sapiens |
| Characteristics |
cell: Caco-2
cell organism: Human
cell description: colorectal adenocarcinoma. (PMID: 1939345)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: Input
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
|
| |
|
| Submission date |
Jun 28, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (1) |
| GSE30263 |
CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington |
|
| Relations |
| SRA |
SRX080354 |
| BioSample |
SAMN00631372 |
| Named Annotation |
GSM749691_hg19_wgEncodeUwTfbsCaco2InputStdRawRep1.bigWig |
