 |
 |
GEO help: Mouse over screen elements for information.
|
|
|
| Status |
Public on Sep 29, 2011 |
| Title |
HudsonAlpha_ChipSeq_K562_FOSL1_(SC-183)_v041610.1 |
| Sample type |
SRA |
| |
|
| Source name |
K562
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1
antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-183
controlid: SL2455
labexpid: SL3187,SL2349
replicate: 1,2
softwareversion: MACS
antibody: FOSL1_(SC-183)
antibody antibodydescription: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin.
antibody targetdescription: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-183
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.1
protocol description: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid: SL2455
labexpid: SL2349
replicate: 1
replicate description: tier 1
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Growth protocol |
K562_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Submission date |
Sep 28, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (2) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX100484 |
| BioSample |
SAMN00738401 |
| Named Annotation |
GSM803439_hg19_wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep1.bigWig |
| Named Annotation |
GSM803439_hg19_wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM803439_hg19_wgEncodeHaibTfbsK562Fosl1sc183V0416101PkRep1.broadPeak.gz |
139.4 Kb |
(ftp)(http) |
BROADPEAK |
| GSM803439_hg19_wgEncodeHaibTfbsK562Fosl1sc183V0416101PkRep2.broadPeak.gz |
105.8 Kb |
(ftp)(http) |
BROADPEAK |
| GSM803439_hg19_wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep1.bigWig |
13.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM803439_hg19_wgEncodeHaibTfbsK562Fosl1sc183V0416101RawRep2.bigWig |
15.9 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
