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GEO help: Mouse over screen elements for information.
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| Status |
Public on Oct 25, 2011 |
| Title |
UT-A_ChipSeq_K562_c-Myc |
| Sample type |
SRA |
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| Source name |
K562
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| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
treatment: None
treatment description: No special treatment or protocol applies
antibody antibodydescription: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-764
controlid: wgEncodeEH000529
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.01,1% ENCODE array platform validation tests,fseq v 1.84, iff_K562
replicate: 1,3,2
antibody antibodydescription: rabbit polyclonal to amino acids 1-262 of c-Myc human origin
antibody targetdescription: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-764
controlid: K562/Input
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
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| Biomaterial provider |
ATCC
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| Growth protocol |
K562_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
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| Submission date |
Oct 25, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (2) |
| GSE33213 |
Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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| Relations |
| Reanalyzed by |
GSM1002657 |
| SRA |
SRX103009 |
| BioSample |
SAMN00744179 |
| Named Annotation |
GSM822310_hg19_wgEncodeOpenChromChipK562CmycBaseOverlapSignal.bigWig |
| Named Annotation |
GSM822310_hg19_wgEncodeOpenChromChipK562CmycSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM822310_hg19_wgEncodeOpenChromChipK562CmycBaseOverlapSignal.bigWig |
178.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM822310_hg19_wgEncodeOpenChromChipK562CmycPk.narrowPeak.gz |
671.8 Kb |
(ftp)(http) |
NARROWPEAK |
| GSM822310_hg19_wgEncodeOpenChromChipK562CmycSig.bigWig |
2.6 Gb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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