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| Status |
Public on Jan 20, 2012 |
| Title |
CACO2, gene expression array U133Plus2 replicate 2 |
| Sample type |
RNA |
| |
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| Source name |
CACO2
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| Organism |
Homo sapiens |
| Characteristics |
cell line: CACO2
origin: large_intestine
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA were isolated using an RNeasy kit (Qiagen, Germantown, MD).
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| Label |
biotin
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| Label protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
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| Hybridization protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
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| Scan protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
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| Data processing |
Data were normalized using Bioconductor and the R package gcrma.
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| Submission date |
Dec 05, 2011 |
| Last update date |
Jan 20, 2012 |
| Contact name |
Keith A Ching |
| E-mail(s) |
keith.ching@pfizer.com
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| Organization name |
Pfizer, Inc.
|
| Department |
Computational Sciences
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| Street address |
10777 Science Center Dr.
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
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| Platform ID |
GPL570 |
| Series (1) |
| GSE34211 |
Pfizer Molecular Profile Data for Cell Lines |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
gcRMA |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
10.7349948517129 |
| 1053_at |
11.0068024962768 |
| 117_at |
2.62379606087553 |
| 121_at |
6.65496408301906 |
| 1255_g_at |
2.04579490701932 |
| 1294_at |
2.07085308620373 |
| 1316_at |
2.94668128172884 |
| 1320_at |
2.9667476969032 |
| 1405_i_at |
3.83126117146031 |
| 1431_at |
2.81803397363297 |
| 1438_at |
1.90063819060574 |
| 1487_at |
8.96083707082863 |
| 1494_f_at |
2.30964659896249 |
| 1552256_a_at |
10.4243066493027 |
| 1552257_a_at |
9.93107669106622 |
| 1552258_at |
3.33806480568272 |
| 1552261_at |
2.7731725738361 |
| 1552263_at |
7.7802444795162 |
| 1552264_a_at |
10.0316841406116 |
| 1552266_at |
2.81277478194028 |
Total number of rows: 54675
Table truncated, full table size 1478 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM843482_CACO2_3_PFIZER.CEL.gz |
4.5 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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