|
|
| Status |
Public on Apr 27, 2012 |
| Title |
HudsonAlpha_RnaSeq_U87_longPolyA (superseded by GSE90176) |
| Sample type |
SRA |
| |
|
| Source name |
U87
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
labexpid: SL532,SL533
labversion: cufflinks_v_0.9
mapalgorithm: bow125
mapalgorithm description: bowtie v0.12.5
readtype: 1x36
readtype description: Single 36 nt reads
replicate: 1,2
treatment description: No special treatment or protocol applies
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
labexpid: SL532
labversion: cufflinks_v_0.9
mapalgorithm: bow125
mapalgorithm description: bowtie v0.12.5
readtype: 1x36
readtype description: Single 36 nt reads
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Growth protocol |
U-87_Myers_protocol.pdf
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibRnaSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
****************************
GSM923437 record metadata submitted on Apr 27 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90176
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibRnaSeq
|
| |
|
| Submission date |
Apr 27, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (1) |
| GSE35584 |
RNA-seq from ENCODE/HudsonAlpha |
|
| Relations |
| Superseded by |
GSE90176 |
| SRA |
SRX144806 |
| BioSample |
SAMN00990144 |
| Named Annotation |
GSM923437_hg19_wgEncodeHaibRnaSeqU87RawRep1V2.bigWig |
| Named Annotation |
GSM923437_hg19_wgEncodeHaibRnaSeqU87RawRep2V2.bigWig |
