|
|
| Status |
Public on Apr 27, 2012 |
| Title |
UW_RepliSeq_K562 |
| Sample type |
SRA |
| |
|
| Source name |
K562
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: RepliSeq
datatype description: Assessment of DNA Replication Timing
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
labexpid: DS8837
phase: G1
phase description: Flow sorted, G1 phase corresponds to the first DNA content window
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
K562_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwRepliSeq
|
| |
|
| Submission date |
Apr 27, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (2) |
| GSE34399 |
Replication Timing by Repli-seq from ENCODE/University of Washington |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| Reanalyzed by |
GSE53984 |
| SRA |
SRX144819 |
| BioSample |
SAMN00990238 |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562G1PctSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562G2PctSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562S1PctSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562S2PctSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562S3PctSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562S4PctSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562SumSignalRep1.bigWig |
| Named Annotation |
GSM923448_hg19_wgEncodeUwRepliSeqK562WaveSignalRep1.bigWig |
