|
|
| Status |
Public on Jun 07, 2012 |
| Title |
UW_ChipSeq_Caco-2_H3K36me3 |
| Sample type |
SRA |
| |
|
| Source name |
Caco-2
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Caco-2
cell organism: human
cell description: colorectal adenocarcinoma. (PMID: 1939345)
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000454
labexpid: DS12406
labversion: Bowtie 0.12.5
replicate: 1
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Growth protocol |
Stam_15_protocols.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
|
| |
|
| Submission date |
Jun 07, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE35583 |
Histone Modifications by ChIP-seq from ENCODE/University of Washington |
|
| Relations |
| SRA |
SRX189989 |
| BioSample |
SAMN01731468 |
| Named Annotation |
GSM945206_hg19_wgEncodeUwHistoneCaco2H3k36me3StdRawRep1.bigWig |
| Named Annotation |
GSM945206_hg19_wgEncodeUwHistoneCaco2H3k36me3StdRawRep2.bigWig |
