NAR Database Summary Paper Alphabetic List
1000 Genomes Selection Browser Engelken, Johannes; Pybus, Marc; Dall'Olio, Giovanni; Luisi, Pierre; Uzkudun, Manu; Carreño-Torres, Angel; Pavlidis, Pavlos; Laayouni, Hafid; Bertranpetit, Jaume
Signature of selection in the human genomes
database summary
Signature of selection in the human genomes
database summary
16S and 23S Ribosomal RNA Mutation Database Triman K.L.
16S and 23S ribosomal RNA mutations
database summary
16S and 23S ribosomal RNA mutations
database summary
2D-PAGE Pleissner, K.-P., Eifert, T., Buettner, S., Knipper, J., Schmelzer, P., Stein, R., Schmidt, F., Mattow, J., Zimny-Arndt, U., Schmid, M., Jungblut, P.R.
Proteome database system for microbial research
database summary
Proteome database system for microbial research
database summary
2P2Idb Basse, MJ., Betzi, S., Bourgeas, R., Bouzidi, S., Chetrit, B., Hamon, V., Morelli, X., and Roche, P.
2P2Idb - database dedicated to the modulation of protein-protein interactions
database summary
2P2Idb - database dedicated to the modulation of protein-protein interactions
database summary
3D rRNA modification maps
Locations of modified rRNA nucleotides within the 3D structure of the ribosome
database summary
Locations of modified rRNA nucleotides within the 3D structure of the ribosome
database summary
3D-Footprint Bruno Contreras-Moreira
Estimates of DNA-binding specificity for protein-DNA complexes in PDB
database summary
Estimates of DNA-binding specificity for protein-DNA complexes in PDB
database summary
3DID - 3D interacting domains Aloy, Patrick; Mosca, Roberto; Ceol, Arnaud; Stein, Amelie; Olivella, Roger
Domain-domain interactions in proteins with known 3D structures
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Domain-domain interactions in proteins with known 3D structures
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3DIV Jung, Inkyung; Kim, Kyukwang; Jang, Insu; Kim, Mooyoung; Choi, Jinhyuk; Kim, Min-Seo; Lee, Byungwook
Three-dimensional (3D) chromatin structure is an emerging paradigm for unde
database summary
Three-dimensional (3D) chromatin structure is an emerging paradigm for unde
database summary
3DNALandscapes Guohui Zheng, Andrew V. Colasanti, Xiang-Jun Lu, and Wilma K. Olson
Conformational features of DNA
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Conformational features of DNA
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3DSNP Lu, Yiming; Quan, Cheng; Ping, Jie; Lu, Hao; Zhou, Gangqiao
regulatory function of human noncoding variants by exploring their 3D interactions
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regulatory function of human noncoding variants by exploring their 3D interactions
database summary
3DSNP Zhang, Chenggang; Lu, Yiming; Quan, Chen; Chen, Hebing; Bo, Xiaochen
Regulatory roles of human noncoding SNPs: their 3D interactions with genes and other SNPs
database summary
Regulatory roles of human noncoding SNPs: their 3D interactions with genes and other SNPs
database summary
3DSwap: Database of Proteins involved in 3D domain Swapping Khader Shameer1,3, Prasahant N. Shingate1, Manjunath, S.C.P.1, Karthika, M.1, Ganesan Pugalenthi2 and Ramanathan Sowdhamini1*
3DSwap, a database of domain swapped proteins
database summary
3DSwap, a database of domain swapped proteins
database summary
Oryza Tag Line P. Larmande1, C. Gay1, C. Sallaud1, C. PÉrin1, P. Perez2, M. Lorieux3, J.B. Morel4, A.A.T. Johnson1, M. Ruiz1, B. Courtois1 and E. Guiderdoni1
T-DNA insertion mutants of rice
database summary
T-DNA insertion mutants of rice
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ShiBase Yang J.1, Chen L.H.1, Yu J.2, Sun L.L.1, Jin Q.1
Comparative genomics of Shigella
database summary
Comparative genomics of Shigella
database summary
A3D Model Organism Database Ventura, Salvador; Badaczewska-Dawid, Aleksandra; Kuriata, Aleksander; Pintado-Grima, Carlos; Garcia-Pardo, Javier; Burdukiewicz, Michał; Iglesias, Valentin; Kmiecik, Sebastian
A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms
database summary
A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms
database summary
AAgAtlas Wang, Dan .; Yang, Liuhui; Zhang, Ping; Labaer, Joshua; Hermjakob, Henning; Li, Dong `; yu, xiaobo
Human autoantigen database
database summary
Human autoantigen database
database summary
AAindex Katayama, T., Kawashima, S., Kanehisa, M.
Physicochemical and biological properties of amino acids
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Physicochemical and biological properties of amino acids
database summary
ABA - Ascidian Body Atlas Hotta, K.1,2, Tahakashi, H.3, Ueno, N.3, Ikeo, K.1, Gojobori, T.1
A digital 3D atlas of ascidian embryo development
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A digital 3D atlas of ascidian embryo development
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ABC Portal Gao, Xin; Hong, Fang; Hu, Zhenyu; Zhang, Zilong; Lei, Yang; Li, Xiaoyun; Cheng, Tao,
Single cell transcriptomics of blood cells
database summary
Single cell transcriptomics of blood cells
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ABC-HuMi Gurevich, Alexey; Hirsch, Pascal; Tagirdzhanov, Azat; Kushnareva, Aleksandra; Olkhovskii, Ilia; Graf, Simon; Schmartz, Georges; Mueller, Rolf; Keller, Andreas
ABC-HuMi: the Atlas of Biosynthetic Gene Clusters in the Human Microbiome
database summary
ABC-HuMi: the Atlas of Biosynthetic Gene Clusters in the Human Microbiome
database summary
aBiofilm Kumar, Manoj,; Rajput, Akanksha; Thakur, Anamika; Sharma, Shivangi
Biofilms play an important role in the antibiotic drug resistance, which is
database summary
Biofilms play an important role in the antibiotic drug resistance, which is
database summary
ABS Blanco E.1,2, Farre D.1,2, Alba M.1, Messeguer X.2 and Guigo R.1
Experimentally verified orthologous transcription factor binding sites
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Experimentally verified orthologous transcription factor binding sites
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ACLAME - A Classification of Mobile genetic Elements
A classification of genetic mobile elements
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A classification of genetic mobile elements
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AcrDB Yin, Yanbin; Huang, Le; Yang, Bowen; Yi, Haidong; Asif, Amina; Wang, Jiawei; Lithgow, Trevor; Zhang, Han; Minhas, Fayyaz-ul-Amir Afsar
anti-CRISPR operons
database summary
anti-CRISPR operons
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AcrHub Lithgow, Trevor; Wang, Jiawei; Dai, Wei; Li, Jiahui; Li, Qi; Xie, Ruopeng; Zhang, Yanju; Stubenrauch, Christopher
anti-CRISPR proteins
database summary
anti-CRISPR proteins
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ActiveDriverDB Reimand, Jüri; Krassowski, Michal; Paczkowska, Marta; Cullion, Kim; Huang, Tina; Dzneladze, Irakli; Ouellette, Francis; Yamada, Joseph; Fradet-Turcotte, Amelie
No description supplied
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No description supplied
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ADC-DB Zhu, Feng; Shen, Liteng; Sun, Xiuna; Chen, Zhen; Guo, Yu; Shen, Zheyuan; Song, Yi; Xin, Wenxiu; Ding, Haiying; Ma, Xinyue; Xu, Weiben; Zhou, Wanying; Che, Jinxin; Tan, Lili; Chen, Liangsheng; Chen, Siqi; Dong, Xiaowu; Fang, Luo
ADCdb: pharma-information and biological activity of antibody-drug conjugate
database summary
ADCdb: pharma-information and biological activity of antibody-drug conjugate
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ADDA - A Domain Database Andreas Heger and Liisa Holm
A database of protein domain families
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A database of protein domain families
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Addgene Repository Database Kamens, Joanne
Plasmid vectors from publications and commercial sources
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Plasmid vectors from publications and commercial sources
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ADPriboDB Leung, Anthony; Ayyappan, Vinay; Wat, Ricky; Barber, Calvin; Vivelo, Christina; Gauch, Kathryn; Visanpattanasin, Pat; Cook, Garth; Sazeides, Christos
ADP-ribosylated proteins and sites
database summary
ADP-ribosylated proteins and sites
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ADReCS Ji, Zhi-Liang; Cai, Mei-Chun; Xu, Quan; Pan, Yan-Jing; Pan, Wen; Ji, Nan; Li, Yin-Bo; Jin, Hai-Jing; Liu, Ke
Adverse Drug Reaction Classification System
database summary
Adverse Drug Reaction Classification System
database summary
ADReCS-Target Ji, Zhi-Liang; Huang, Li-Hong; He, Qiu-Shun; Liu, Ke; Cheng, Jiao; Zhong, Min-Dong; Chen, Lin-Shan
No description supplied
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No description supplied
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AFDB Velankar, Sameer; Varadi, Mihaly; Bertoni, Damian; Magana, Paulyna; Paramval, Urmila; Pidruchna, Ivanna; Radhakrishnan, Malarvizhi; Tsenkov, Maxim; Nair, Sreenath; Mirdita, Milot; Yeo, Jingi; Kovalevskiy, Oleg; Tunyasuvunakool, Kathryn; ŽÃdek, Augustin; Hariharan, Dhavanthi; Abrahamson, Josh; Green, Tim; Jumper, John; Hassabis, Demis; Steinegger, Martin; Laydon, Agata; Birney, Ewan
AlphaFold Protein Structure Database in 2024: Providing structure coverage for over 214 million protein sequences
database summary
AlphaFold Protein Structure Database in 2024: Providing structure coverage for over 214 million protein sequences
database summary
AgBase McCarthy F.M.1,2, Bridges S.M.2,3, Wang N.2,3, Magee G.B.2,3, Williams W.P.4, Luthe D.5, and Burgess S.C.1,3,6
GO annotations for agriculturally important plants and animals
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GO annotations for agriculturally important plants and animals
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AgeAnno Zhou, Xiaobo1; Huang, Kexin; Gong, Haoran; Guan, Jingjing; Zhang, Lingxiao; Hu, Changbao; Zhao, Weiling; Huang, Liyu; Zhang, Wei; Kim, Pora
Single cell annotation of aging in human
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Single cell annotation of aging in human
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AgeAnnoMO Zhou, Xiaobo1 ; Huang, Kexin; Liu, Xi; Zhang, Zhaocan; Wang, Tiangang; Xu, Haixia; Li, Qingxuan; Jia, Yuhao; Kim, Pora; Huang, Liyu
AgeAnnoMO: a knowledgebase of multi-omics annotation for animal aging
database summary
AgeAnnoMO: a knowledgebase of multi-omics annotation for animal aging
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AgeFactDB Suehnel, Juergen; Huehne, Rolf; Thalheim, Torsten
Ageing factors, phenotypes and lifespan data
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Ageing factors, phenotypes and lifespan data
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AGIDB Li, Xinyun; Zhang, Kaili; Liang, Jiete; Fu, Yuhua; Chu, Jinyu; Fu, Liangliang; Wang, Yongfei; Li, Wangjiao; Zhou, You; Li, Jinhua; Yin, Xiaoxiao; Wang, Haiyan3; Liu, Xiaolei; Mou, Chunyan; Wang, Chong-Long; Wang, Heng; Dong, Xinxing; Yan, Dawei; Yu, Mei'; Zhao, Shuhong1; Ma, Yunlong
AGIDB: a versatile database for genotype imputation and variant decoding across species
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AGIDB: a versatile database for genotype imputation and variant decoding across species
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AgingChart Moskalev, Alexey; Zhikrivetskaya, Svetlana; Shaposhnikov, Mikhail; Dobrovolskaya, Eugenia; Gurinovich, Roman; Kuryan, Oleg; Pashuk, Aleksandr; Jellen, Leslie; Aliper, Alex; Peregudov, Alex; Zhavoronkov, Alex
Pathways of age-related processes
database summary
Pathways of age-related processes
database summary
AGRIS - Arabidopsis Gene Regulatory Information Server Davuluri RV1, Sun H1, Palaniswamy SK1, Matthews N2, Molina C2, Grotewold E2
Arabidopsis gene regulatory information server: promoters, transcription factors and their target genes
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Arabidopsis gene regulatory information server: promoters, transcription factors and their target genes
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AHTPdb Raghava, Gajender; Kumar, Ravi; Chaudhary, Kumardeep; Sharma, Minakshi; Nagpal, Gandharva; Chauhan, Jagat; Singh, Sandeep; Gautam, Ankur
Antihypertensive peptides database
database summary
Antihypertensive peptides database
database summary
al MENA Remya Koshy, Anop Ranawat, Vinod Scaria
al mena: a comprehensive resource of human genetic variants integrating genomes and exomes from Arab, Middle Eastern and North African populations
database summary
al mena: a comprehensive resource of human genetic variants integrating genomes and exomes from Arab, Middle Eastern and North African populations
database summary
Allele Frequency Net Gonzalez, Faviel; Takeshita, Louise; Melo Dos Santos, Eduardo; Kempson, Felicty; Maia, Maria Helena; Soares da Silva, Andrea; Teles e Silva, Andre; Ghattaoraya, Gurpreet; Alfirevic, Ana; Jones, Andrew; Middleton, Derek
Immunogenetic gene frequencies in worldwide populations
database summary
Immunogenetic gene frequencies in worldwide populations
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AlloMAPS Tan, Zhen Wah; Tee, Wei-Ven; Guarnera, Enrico; Berezovsky, Igor
AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta pre
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AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta pre
database summary
AlloMAPS Zhen Wah Tan1, Wei-Ven Tee1,2, Enrico Guarnera1, Lauren Booth1,3 and Igor N. Berezovsky1,2,
AlloMAPS - allosteric mutation analysis and polymorphism of signaling database
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AlloMAPS - allosteric mutation analysis and polymorphism of signaling database
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AlloMAPS: allosteric mutation analysis and polymorphism of signaling database Tan, Zhen Wah;Tee, Wei-Ven;Guarnera, Enrico;Booth, Lauren;Berezovsky, Igor N
No description supplied
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No description supplied
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Allosteric Database Huang, Zhimin; Mou, Linkai; Shen, Qiancheng; Lu, Shaoyong; Liu, Xinyi; Wang, Guanqiao; Li, Shuai; Geng, Lv; Chen, Guoqiang; Zhang, Jian
Allosteric proteins and their activators, inhibitors, and regulators
database summary
Allosteric proteins and their activators, inhibitors, and regulators
database summary
AlphaFold Protein Structure Database Velankar, Sameer; Varadi, Mihaly; Anyango, Stephen; Deshpande, Mandar; Nair, Sreenath; Natassia, Cindy; Yordanova, Galabina; Yuan, David; Stroe, Oana; Wood, Gemma; Laydon, Agata; ŽÃdek, Augustin; Green, Tim; Tunyasuvunakool, Kathryn; Petersen, Stig; Jumpe
Protein structures predicted by AlphaFold
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Protein structures predicted by AlphaFold
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AlzGene Bertram L.1, Mullin K.1, McQueen M.1, Blacker D.1, Tanzi R.E.1, Kinoshita J.2, Noyes P.2, Knep C.2
A database of all published Alzheimer’s disease genetic association studies
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A database of all published Alzheimer’s disease genetic association studies
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AMDB Chun, Jongsik; Yang, Junwon; Park, Jonghyun; Jung, Yeonjae
Animal Microbial Database
database summary
Animal Microbial Database
database summary
AmtDB: a database of ancient human mitochondrial genomes Ehler, Edvard;Novotný, JiÅ™ÃÂ;Juras, Anna;ChyleÅ„ski, Maciej;MoravÄ\x8DÃÂk, OndÃ…â„¢ej;PaÄ\x8Des, Jan
No description supplied
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No description supplied
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Amylograph Burdukiewicz, Michał; Rafacz, Dominik; Barbach, Agnieszka; Hubicka, Katarzyna; Bąkała, Laura; Lassota, Anna; Stecko, Jakub; Szymańska, Natalia; Wojciechowski, Jakub; Kozakiewicz, Dominika; Szulc, Natalia; Chilimoniuk, Jarosław; Jęśkowiak, Izabela; Gąsior-
Amyloid-amyloid interactions
database summary
Amyloid-amyloid interactions
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AmyPro Pancsa, Rita; Varadi, Mihaly; De Baets, Greet; Vranken, Wim; Tompa, Peter
No description supplied
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No description supplied
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Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life Huang, Xiaosong;Albou, Laurent-Philippe;Mushayahama, Tremayne;Muruganujan, Anushya;Tang, Haiming;Thomas, Paul D
No description supplied
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No description supplied
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Animal Genome Size Database Gregory, T.R.
Genome sizes of vertebrates and invertebrates
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Genome sizes of vertebrates and invertebrates
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Animal QTLdb and CorrDB Hu, Zhi-Liang; Park, Carissa; Reecy, James
Bringing the Animal QTLdb and CorrDB into the future: meeting new challenge
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Bringing the Animal QTLdb and CorrDB into the future: meeting new challenge
database summary
Animal-APAdb Gong, Jing; Jin, Weiwei; Zhu, Qizhao; Yang, Yanbo; Yang, Wenqian; Wang, Dongyang.; Yang, Jiajun; Niu, Xiaohui; Yu, Debing
Alternative polyadenylation in animals
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Alternative polyadenylation in animals
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Animal-eRNAdb Gong, Jing; Jin, Weiwei; Jiang, Guanghui; Yang, Yanbo; Yang, Jianye; Yang, Wenqian; Wang, Dongyang.; Niu, Xiaohui; Zhong, Rong; Zhang, Zhao
Animal enhancer RNAs
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Animal enhancer RNAs
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Animal-SNPAtlas Gong, Jing; Gao, Yingjie; Jiang, Guanghui; Yang, Wenqian; Jin, Weiwei; Xu, Xuewen; Niu, Xiaohui
High-quality SNPs in 20 animal species
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High-quality SNPs in 20 animal species
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AnimalMetaOmics Hu, Shengwei; Hu, Ruirui; Li, Fulin; Chen, Yifan; Liu, Chuyang; Li, Jiawei; Ma, Zhongchen; Wang, Yue; Cui, Chaowen; Luo, Chengfang; Zhou, Ping1; ni, wei; Yang, Qing-Yong
AMLdb: a multi-omics data resources for exploring animal microbial genomes and microbiomes
database summary
AMLdb: a multi-omics data resources for exploring animal microbial genomes and microbiomes
database summary
AnimalQTLdb Z.-L. Hu, E.R. Fritz and J.M. Reecy
Quantitative trait loci in livestock animals
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Quantitative trait loci in livestock animals
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AnimalTFDB Guo, Anyuan; Shen, Wen-Kang; Chen, Siyi; Gan, Zi-Quan; Zhang, Yu-Zhu; Yue, Tao; Chen, Miao-Miao; Xue, Yu; Hu, Hui
AnimalTFDB 4.0: a comprehensive animal transcription factor database update
database summary
AnimalTFDB 4.0: a comprehensive animal transcription factor database update
database summary
AnimalTFDB Guo, An-Yuan; Zhang, Hong-Mei.; Liu, Teng; Liu, Chun-Jie; Song, Shuangyang; Zhang, Xiantong; Liu, Wei.; Jia, Haibo; Xue, Yu
Animal Transcription Factor Database
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Animal Transcription Factor Database
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AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors Hu, Hui;Miao, Ya-Ru;Jia, Long-Hao;Yu, Qing-Yang;Zhang, Qiong;Guo, An-Yuan
No description supplied
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No description supplied
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ANISEED Lemaire, Patrick; Brozovic, Matija; Martin, Cyril; Dantec, Christelle; Dauga, Delphine; Mendez, Mickael; Simion, Paul; Percher, Madeline; Laporte, Baptiste; Scornavacca, Céline; Fujiwara, Shigeki; Gineste, Mathieu; Lowe, Elijah; Piette, Jacques; Sasakura, Yasunori; Takatori, Naohito; Brown, Titus; Delsuc, Frederic; Gissi, Carmela; DOUZERY, Emmanuel; McDougall, Alex; NISHIDA, Hiroki; Sawada, Hitoshi; Swalla, Billie; Yasuo, Hitoyoshi
No description supplied
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No description supplied
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ANISEED Lemaire, Patrick; Brozovic, Matija; Dantec, Christelle; Dardaillon, Justine; Dauga, Delphine; Faure, Emmanuel; Gineste, Mathieu; Louis, Alexandra; Nitta, Kazuhiro; Naville, Magali; Piette, Jacques; Scornavacca, Céline; Simion, Paul; Vincentelli, Renaud; Bellec, Maelle; Besnardeau, Lydia; Fagotto, Marie; Guéroult-Bellone, Marion; Haeussler, Maximilian; Jacox, Edwin; Mendez, Mickael; Reeves, Wendy; Roberge, Alexis; Stolfi, Alberto; Yokomori, Rui; Cambillau, Christian; Christiaen, Lionel; Delsuc, Frédéric; Douzery, Emmanuel; Dumollard, Rémi; Kusakabe, Takehiro; Nakai, Kenta; NISHIDA, Hiroki; Satou, Yutaka; Veeman, Michael; Volff, Jean-Nicolas
No description supplied
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No description supplied
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anti-CRISPRdb Guo, Feng-Biao; Dong, Chuan; Hao, Ge-Fei; Hua, Hong-Li; Liu, Shuo; Labena, Abraham; Chai, Guoshi; Huang, Jian.,; Rao, Nini
Anti-CRISPRdb is a comprehensive online resource that effectively organizes
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Anti-CRISPRdb is a comprehensive online resource that effectively organizes
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Antibody Registry Bandrowski, Anita; Pairish, Mason; Eckman, Peter; Grethe, Jeffrey; Martone, Maryann
Antibodies, their antigens and catalogue numbers
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Antibodies, their antigens and catalogue numbers
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AntigenDB Hifzur Rahman Ansari, Darren R. Flower, and G.P.S. Raghava
Sequence, structure, and other data on pathogen antigens
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Sequence, structure, and other data on pathogen antigens
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AntiJen Toseland C.P., Clayton D.J., McSparron H., Hemsley S.L., Blythe M.J., Paine K., Doytchinova I.A., Guan P., Hattotuwagama C.K. and Flower D.R.
Quantitative binding data for peptides and proteins of immunological interest
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Quantitative binding data for peptides and proteins of immunological interest
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antiSMASH Weber, Tilmann; Blin, Kai; Shaw, Simon; Kautsar, Satria; Medema, Marnix
antibiotics and Secondary Metabolite Analysis SHell
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antibiotics and Secondary Metabolite Analysis SHell
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antiSMASH database Blin, Kai; Weber, Tilmann; Shaw, Simon; Medema, Marnix
The antiSMASH database version 4: Additional genomes and BGCs, new sequence-based searches, and more.
database summary
The antiSMASH database version 4: Additional genomes and BGCs, new sequence-based searches, and more.
database summary
APAatlas: decoding alternative polyadenylation across human tissues Hong, Wei;Ruan, Hang;Zhang, Zhao;Ye, Youqiong;Liu, Yaoming;Li, Shengli;Jing, Ying;Zhang, Huiwen;Diao, Lixia;Liang, Han;Han, Leng
Alternative polyadenylation (APA) is an RNA-processing mechanism on the 3â
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Alternative polyadenylation (APA) is an RNA-processing mechanism on the 3â
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APASdb You, Leiming; Wu, Jiexin; Feng, Yuchao; Fu, Yonggui; Guo, Yanan; Long, Liyuan; Zhang, Hui; Tian, Peng; Chen, Liangfu; Li, Yuxing; Luan, Yijie; Huang, Guangrui; Chen, Chengyong; Huang, Shengfeng; Chen, Shangwu; Xu, Anlong
Alternative poly(A) sites and downstream cleavage sites
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Alternative poly(A) sites and downstream cleavage sites
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ApiDB - Apicomplexan DataBase Aurrecoechea C.1, Heiges M.1, Wang H.1, Wang Z.2, Fischer S.3, Rhodes P.2,Miller J.2, Kraemer E.2, Stoeckert C.3, Roos D.4, Kissinger J.1,5
Unified resource for various apicomplexan species
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Unified resource for various apicomplexan species
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APPRIS Tress, Michael; RodrÃguez, Jose; Pozo, Fernando; Cerdán-Vélez, Daniel; di Domenico, Tomas; Vazquez, Jesus
APPRIS: selecting functionally important isoforms
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APPRIS: selecting functionally important isoforms
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APPRIS Tress, Michael; RodrÃÂguez, Jose; Rodriguez-Rivas, Juan; Di Domenico, Tomas; Vazquez, Jesus; Valenica, Alfonso
No description supplied
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No description supplied
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Aquila Cheung, Edwin; Zheng, Yimin; chen, yitian; Ding, Xianting; Wong, Chris Koon Ho
Spatial omics data
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Spatial omics data
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Arabidopsis Hormone Database Peng, Z.Y.1, Zhou, X.2, Li, L.1, Yu, X.1, Li, H.1, Jiang, Z.1, Cao, G.1, Bai, M.3, Wang, X.4, Jiang, C5, Lu, H.6, Hou, X.1, Qu, L1, Wang, Z.3, Zuo, J.4, Fu, X.5, Su, Z.2, Li, S.1, and Guo, H.1
A Comprehensive Genetic and Phenotypic Information Database for Plant Hormone Research in Arabidopsis
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A Comprehensive Genetic and Phenotypic Information Database for Plant Hormone Research in Arabidopsis
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Arabidopsis Mitochondrial Protein Database Heazlewood J.L., Tonti-Filippini J.S., Gout A., Day D.A., Whelan J. and Millar A.H.
Experimentally identified mitochondrial proteins in Arabidopsis
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Experimentally identified mitochondrial proteins in Arabidopsis
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Arabidopsis MPSS
Arabidopsis gene expression detected by massively parallel signature sequencing
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Arabidopsis gene expression detected by massively parallel signature sequencing
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Arabidopsis Nucleolar Protein Database
Comparative analysis of nucleolar proteomes of human and Arabidopsis
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Comparative analysis of nucleolar proteomes of human and Arabidopsis
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ArachnoServer Volker Herzig, David L. A. Wood, Felicity Newell, Pierre-Alain Chaumeil, Quentin Kaas, Greta J. Binford, Graham M. Nicholson, Dominique Gorse, and Glenn F. King
Sequence, structure and activity of protein toxins from spider venom
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Sequence, structure and activity of protein toxins from spider venom
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AraGWAS Catalog Korte, Arthur; Togninalli, Matteo; Seren, Ãœmit; Meng, Dazhe; Fitz, Joffrey; Nordborg, Magnus; Weigel, Detlef; Borgwardt, Karsten; Grimm, Dominik
No description supplied
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No description supplied
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ARAMEMNON Schwacke, R.1, Schneider, A.1, van der Graaff, E.1, Desimone, M.2, Frommer, W.B.2,3, FlÜgge, U.I.1, Kunze, R.1
Arabidopsis thaliana membrane proteins and transporters
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Arabidopsis thaliana membrane proteins and transporters
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AraNet Lee, Insuk; Lee, Tak; Yang, Sunmo; Kim, Eiru; Ko, Younhee; Hwang, Sohyun; Shin, Junha; Shim, Jung; Shim, Hongsuk; Kim, Hyojin; Kim, Chanyoung
Functional relationships between plant genes
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Functional relationships between plant genes
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AraPheno Korte, Arthur; Seren, Ãœmit; Grimm, Dominik; Fitz, Joffrey; Weigel, Detlef; Nordborg, Magnus; Borgwardt, Karsten
Phenotypic data for Arabidopsis thaliana
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Phenotypic data for Arabidopsis thaliana
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Araport Krishnakumar, Vivek; Hanlon, Matthew; Contrino, Sergio; Ferlanti, Erik; Karamycheva, Svetlana; Kim, Maria; Rosen, Benjamin; Cheng, Chia-Yi; Moreira, Walter; Mock, Stephen; Stubbs, Joseph; Sullivan, Julie; Krampis, Konstantinos; Miller, Jason; Micklem, Gos; Vaughn, Matthew; Town, Christopher
Arabidopsis Information Portal established by the International Arabidopsis Informatics Consortium
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Arabidopsis Information Portal established by the International Arabidopsis Informatics Consortium
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ArchDB Bonet J, Planas-Iglesias J, Garcia-Garcia J, MarÃÂn-López MA, Fernandez-Fuentes N, Oliva B.
Automated classification of protein loop structures
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Automated classification of protein loop structures
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AREsite Andreas R. Gruber, Jörg Fallmann, Franz Kratochvill, Pavel Kovarik, and Ivo L. Hofacker
AU-rich elements in vertebrate mRNA UTR sequences
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AU-rich elements in vertebrate mRNA UTR sequences
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ArrayMap Cai, Haoyang; Gupta, Saumya; Rath, Prisni; Ai, Ni; Baudis, Michael Baudis
Gene copy number profiling data in human cancer
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Gene copy number profiling data in human cancer
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ARTS-DB Ziemert, Nadine; Mungan, Mehmet; Blin, Kai
Database for Antibiotic Resistant Targets
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Database for Antibiotic Resistant Targets
database summary
ASAP - A Systematic Annotation Package
Community analysis of E. coli and related genomes
database summary
Community analysis of E. coli and related genomes
database summary
ASC - Active Sequence Collection Angelo Facchiano1, Antonio Facchiano2, Francesco Facchiano2
Biologically-active short amino acid sequences
database summary
Biologically-active short amino acid sequences
database summary
ASCancer Wu, Song; Huang, Yue; Zhang, Mochen; Gong, Zheng; Guoliang, Wang; Zheng, Xinchang; Wenting, Zong; Zhao, Wei; Xing, Peiqi; Li, Rujiao; Liu, Zhaoqi; Bao, Yi-Ming
Alternative splicing in cancer
database summary
Alternative splicing in cancer
database summary
ASD Zhang, Jian#; He, Jixiao; Liu, Xinyi.; Zhu, Chunhao; Zha, Jinyin; Li, Qian; Zhao, Mingzhu; Wei, Jiacheng; Li, Mingyu; Wu, Chengwei; Wang, Junyuan; Jiao, Yonglai; Ning, Shaobo; Zhou, Jiamin; Hong, Yue; Liu, Yonghui; He, Hongxi; Zhang, Mingyang; Chen, Feiying; Li, Yanxiu; Song, Kun; Lu, Xuefeng
ASD2023: towards the integrating landscapes of allosteric knowledgebase
database summary
ASD2023: towards the integrating landscapes of allosteric knowledgebase
database summary
ASMdb Li, Guoliang; Zhou, Qiangwei; Guan, Pengpeng; Zhu, Zhixian; Cheng, Sheng; Zhou, Cong; Wang, Huanhuan; Xu, Qian; Sung, Wing- Kin
Allele-Specific DNA Methylation Database
database summary
Allele-Specific DNA Methylation Database
database summary
ASPD Valuev, V.P., Afonnikov D.A., Ponomarenko M.P., Kolchanov N.A.
Artificial Selected Proteins/Peptides Database
database summary
Artificial Selected Proteins/Peptides Database
database summary
AspGD Cerqueira, Gustavo; Arnaud, Martha; Inglis, Diane; Skrzypek, Marek; Binkley, Jonathan; Orvis, Joshua,; Shah, Prachi; Wymore, Farrell; Sherlock, Gavin; Wortman, Jennifer
The Aspergillus Genome Database
database summary
The Aspergillus Genome Database
database summary
ATACdb Li, Chunquan; Wang, Fan,; Bai, Xuefeng; Wang, Yuezhu; Jiang, Yong'; Ai, Bo; Liu, Yuejuan; Xu, Mingcong; Wang, Qiuyu; Han, Xiaole; Pan, QI; Li, Yanyu; Li, Xuecang; Zhang, Jian.,; Zhao, Jun; Feng, Chenchen; Zhu, Jiang',
Human Assay-for-Transposase-Accessible Chromatin data
database summary
Human Assay-for-Transposase-Accessible Chromatin data
database summary
ATGC David M. Kristensen1, Yuri I. Wolf2 and Eugene Koonin2
Alignable Tight Genomic Clusters of Closely Related Prokaryotic Genomes
database summary
Alignable Tight Genomic Clusters of Closely Related Prokaryotic Genomes
database summary
AtGDB Schlueter, S.D.1, Wilkerson, M.D.1, Brendel, V.1,2
Arabidopsis thaliana genome database
database summary
Arabidopsis thaliana genome database
database summary
AthaMap
Genome-wide map of putative transcription factor binding sites in Arabidopsis thaliana
database summary
Genome-wide map of putative transcription factor binding sites in Arabidopsis thaliana
database summary
ATLAS Gelly, Jean-Christophe; Vander Meersche, Yann; Cretin, Gabriel; Gheeraert, Aria; Galochkina, Tatiana
ATLAS: protein flexibility description from atomistic molecular dynamics simulations
database summary
ATLAS: protein flexibility description from atomistic molecular dynamics simulations
database summary
AtMAD Shi, Tieliu; Lan, Yiheng; Sun, Ruikun; Ouyang, Jian; Ding, Wubin; Kim, Min-Jun; Li, Yuhua
Arabidopsis thaliana Multi-omics Association Database
database summary
Arabidopsis thaliana Multi-omics Association Database
database summary
ATTED-II Obayashi T.1,2,3, Kinoshita K.4,5, Nakai K.4, Shibaoka M.6, Hayashi S.6, Saeki M.6, Shibata D.7, Saito K.2,3,8 and Ohta H.1,9
Coexpressed gene sets and gene regulators in Arabidopsis
database summary
Coexpressed gene sets and gene regulators in Arabidopsis
database summary
AutDB Banerjee-Basu, Sharmila; Pereanu, Wayne; Larsen, Eric; Das, Ishita.; Estévez, Marcel; Sarkar, Anjali; Pearson, Senanu; Kollu, Ravi; Basu, Saumyendra
AutDB is a deeply annotated resource for exploring the impact of genetic va
database summary
AutDB is a deeply annotated resource for exploring the impact of genetic va
database summary
Autophagy Database Hui Liu, Wei Liu, Yifang Liao, Long Cheng, Qian Liu, Xiang Ren, Lisong Shi, Xin Tu, Qing Kenneth Wang, and An-Yuan Guo
Proteins involved in self-digestion of eukaryotic cells
database summary
Proteins involved in self-digestion of eukaryotic cells
database summary
AVPdb Qureshi, Abid; Thakur, Nishant; Tandon, Himani; Kumar, Manoj
A database of experimentally validated AntiViral Peptides
database summary
A database of experimentally validated AntiViral Peptides
database summary
BacDive Söhngen, Carola; Podstawka, Adam; Bunk, Boyke; Gleim, Dorothea; Vetcininova, Anna; Reimer, Lorenz; Ebeling, Christian; Pendarovski, Cezar; Overmann, Jörg
Bacterial Diversity metadatabase
database summary
Bacterial Diversity metadatabase
database summary
BacDive Reimer, Lorenz; Sardà Carbasse, Joaquim; Koblitz, Julia; Ebeling, Christian; Podstawka, Adam; Overmann, Jörg
BacDive in 2022: the knowledge base for standardized bacterial and archaeal
database summary
BacDive in 2022: the knowledge base for standardized bacterial and archaeal
database summary
BacMap Wishart, David; Cruz, Joseph; Liu, Yifeng; Liang, Jack; Zhu, You; Wilson, Michael.; Dennis, Jonathan; Stothard, Paul; Van Domselaar, Gary
Picture atlas of annotated bacterial genomes
database summary
Picture atlas of annotated bacterial genomes
database summary
BacMet Pal, C.1, Bengtsson-Palme, J.1, Rensing, C.2, Kristiansson, E.3, Larsson, DGJ.1
Antibacterial Biocide and Metal Resistance Genes
database summary
Antibacterial Biocide and Metal Resistance Genes
database summary
BacWGSTdb Ruan, Zhi; Feng, Ye; Zou, Shengmei; Chen, Hangfei; Yu, Yunsong
Bacterial whole genome sequence typing database
database summary
Bacterial whole genome sequence typing database
database summary
BARCdb Galli, Joakim; Oelrich, Johan; Taussig, Michael; Andreasson, Ulrika; Ortega-Paino, Eva; Landegren, Ulf
Biobanking Analysis Resource Catalogue
database summary
Biobanking Analysis Resource Catalogue
database summary
BARD Howe, Eleanor; de Souza, Andrea; Lahr, David; Chatwin, Simon; Montgomery, Philip; Alexander, Benjamin; Nguyen, Dac-Trung; Cruz, Yasel; Stonich, Derek; Walzer, Gil; Rose, Jason; Picard, Shaita; Liu, Zihan; Rose, Jaime; Xiang, Xiaorong; Asiedu, Jacob; Durkin, Daniel; Levine, Jeri; Yang, Jeremy; Schurer, Stephan; Braisted, Johnathan; Southall, Noel; Southern, Mark; Chung, Thomas; Brudz, Stephen; Tanega, Cordelle; Schreiber, Stuart L; Bittker, Joshua; Guha, Rajarshi; Clemons, Paul
BioAssay Research Database
database summary
BioAssay Research Database
database summary
BarleyBase Shen L.1, Gong J.1,5, Xin J.1,5, Caldo R.A.2, Nettleton D.3, Cook D.3, Wise R.P.2,4 and Dickerson J.A.1,5
Expression profiling of plant genomes
database summary
Expression profiling of plant genomes
database summary
BastionHub Lithgow, Trevor; Wang, Jiawei; Li, Jiahui; Hou, Yi; Dai, Wei; Xie, Ruopeng; Marquez-Lago, Tatiana; Leier, Andre; Zhou, Tieli; Torres, Von; Hay, Iain; Stubenrauch, Christopher; Zhang, Yanju; Song, Jiangning
Substrates of Gram-negative secretion systems
database summary
Substrates of Gram-negative secretion systems
database summary
BATMAN-TCM Li, Dong; Kong, Xiangren; Liu, Chao; Zhang, Zuzhen; Mei, Zhijun; Li, Xiangdong; Cheng, Meiqi; Liu, Peng; Diao, Lihong; Ma, Yajie; Jiang, Peng; Kong, Xiangya; Nie, Shiyan; Guo, Yingzi; Wang, Ze; Zhang, Xinlei; Wang, Yan; Guo, Shuzhen; Liu, Zhongyang
BATMAN-TCM 2.0: an enhanced integrative database for known and predicted linkages between traditional Chinese medicine ingredients and target proteins
database summary
BATMAN-TCM 2.0: an enhanced integrative database for known and predicted linkages between traditional Chinese medicine ingredients and target proteins
database summary
BCCTBbp Chelala, Claude; Cutts, Rosalind; Guerra, Afonso; Gadaleta, Emanuela; Dayem Ullah, Abu
Breast Cancer Campaign Tissue Bank bioinformatics portal
database summary
Breast Cancer Campaign Tissue Bank bioinformatics portal
database summary
BCNTB bioinformatics Chelala, Claude; Gadaleta, Emanuela; Pirrò, Stefano; Dayem Ullah, Abu; Marzec, Jacek
No description supplied
database summary
No description supplied
database summary
Benchmark Sonego P., Pacurar M., Dhir S., Farkas A.T., Kocsor A., Gáspári Z., Leunissen J.A.M. and Pongor S.
Protein classification benchmark collection: training/test sets for machine learning
database summary
Protein classification benchmark collection: training/test sets for machine learning
database summary
BGI-RISe - Beijing Genomics Institute Rice Information System Zhao W.1, Wang J.2, He X.1, Huang X.1, Jiao Y.1, Dai M.1, Wei S.1, Fu J.1, Chen Y.1, Ren X.1, Zhang Y.1,2, Ni P.1, Zhang J.1, Li S.1,2, Wang J.1, Wong G.K.-S.1,3, Zhao H.4, Yu J.1, Yang H.1 and Wang J.1
Integrated rice database
database summary
Integrated rice database
database summary
BIC JUAN, HSUEH-FEN; Chen, Kai-Pu; Hsu, Chia-Lang; Oyang, Yen-Jen; Huang, Hsuan-Cheng
Bacteria in Cancer
database summary
Bacteria in Cancer
database summary
BiG-FAM Medema, Marnix; Kautsar, Satria; Blin, Kai; Shaw, Simon; Weber, Tilmann
Biosynthetic gene cluster families
database summary
Biosynthetic gene cluster families
database summary
BiGG Models Lewis, Nathan; King, Zachary; Lu, Justin; Dräger, Andreas; Miller, Philip; Federowicz, Steve; Lerman, Joshua; Ebrahim, Ali; Palsson, Bernhard
Biochemically, Genetically and Genomically structured metabolic networks
database summary
Biochemically, Genetically and Genomically structured metabolic networks
database summary
BIGNASim GelpÃÂ, Josep LluÃÂs; Hospital, Adam; Andrio, Pau; Cugnasco, Cesare; Codo, Laia; Becerra, Yolanda; Dans, Pablo; Battistini, Federica; Torres, Jordi; Goñi, Ramon; Orozco, Modesto
Molecular dynamics simulations of Nucleic Acids
database summary
Molecular dynamics simulations of Nucleic Acids
database summary
Binding MOAD Ahmed, Aqeel; Smith, Richard; Clark, Jordan; Dunbar, Jim; Carlson, H.A.
Binding Mother of All Databases: a database of protein-ligand crystal structures
database summary
Binding Mother of All Databases: a database of protein-ligand crystal structures
database summary
BindingDB Liu T., Lin Y., Wen X., Jorissen R.N. and Gilson M.K.
Binding affinities of protein-ligand and other complexes
database summary
Binding affinities of protein-ligand and other complexes
database summary
BioCyc
A collection of hundreds of databases that integrate genome and metabolic pathway data.
database summary
A collection of hundreds of databases that integrate genome and metabolic pathway data.
database summary
BioDrugScreen Liwei Li, Khuchtumur Bum-Erdene, Peter H. Baenziger, Joshua J. Rosen, Jamison R. Hemmert, Joy A. Nellis, Marlon E. Pierce, and Samy O. Meroueh
A resource for computational drug design and discovery
database summary
A resource for computational drug design and discovery
database summary
BioExcel-CV19 Hospital, Adam; Beltrán, Daniel; GelpÃ, Josep LluÃs; Orozco, Modesto
A New paradigm for Molecular Dynamics Databases: The Covid19 database, the legacy of a titanic community effort
database summary
A New paradigm for Molecular Dynamics Databases: The Covid19 database, the legacy of a titanic community effort
database summary
BioFuelDB Chaudhary N, Gupta A, Gupta S, Sharma VK.
In light of the rapid decrease in fossils fuel reserves and an increasing d
database summary
In light of the rapid decrease in fossils fuel reserves and an increasing d
database summary
BioGPS Andrew I. Su
Gene annotation portal and a resource on gene and protein function
database summary
Gene annotation portal and a resource on gene and protein function
database summary
BioGRID Tyers, Mike; Chatr Aryamontri, Andrew; Breitkreutz, Bobby-Joe; Heineke, Sven; Boucher, Lorrie; Chen, Daici; Stark, Chris; Breitkreutz, Ashton; Kolas, Nadine; O'Donnell, Lara; Reguly, Teresa; Nixon, Julie; Ramage, Lindsay; Winter, Andrew; Sellam, Adnane; Chang, Christie; Hirschman, Jodi; Theesfeld, Chandra; Rust, Jennifer; Livstone, Mike; Oughtred, Rose; Dolinski, Kara
Genetic and physical interactions in yeast, worm and fly
database summary
Genetic and physical interactions in yeast, worm and fly
database summary
BioKA Zhao, Wen-Ming; Wang, Yibo; Lin, Yihao; Wu, Sicheng; Sun, Jiani; Meng, Yuyan; Jin, Enhui; Kong, Demian; Duan, Guangya; Bei, Shaoqi; Fan, Zhuojing; Wu, Gangaoinactive; Hao, Lili; Song, Shuhui; Tang, Bi-Xia
BioKA: A curated and integrated biomarker knowledgebase for Animals
database summary
BioKA: A curated and integrated biomarker knowledgebase for Animals
database summary
BioLIP Zhang, Chengxin; Zhang, Xi; Freddolino, Peter; Zhang, Yang,
BioLiP2: a structure database for biological relevant ligand-protein interactions
database summary
BioLiP2: a structure database for biological relevant ligand-protein interactions
database summary
BioMagResBank Markley, J., Ulrich, E.
NMR spectroscopic data from proteins, peptides, and nucleic acids
database summary
NMR spectroscopic data from proteins, peptides, and nucleic acids
database summary
BioModels Juty, Nick; Chelliah, Vijayalakshmi; Ajmera, Ishan; Ali, Raza; Dumousseau, Marine; Glont, Mihai; Hucka, Mike; Jalowicki, Gaël; Keating, Sarah; Knight-Schrijver, Vincent; Lloret Villas, Audald; Natarajan, Kedar; Pettit, Jean-Baptiste; Rodriguez, Nicolas; Schubert, Michael; Wimalaratne, Sarala; Zhou, Yangyang; Hermjakob, Henning; Le Novere, Nicolas; Laibe, Camille
Published mathematical models of biological interest
database summary
Published mathematical models of biological interest
database summary
Biomodels Malik-Sheriff, Rahuman; Glont, Mihai; Nguyen, Tung; Graesslin, Martin; Ali, Raza; Schramm, Jochen; Wimalaratne, Sarala; Kothamachu, Varun; Rodriguez, Nicolas; Swat, Maciej; Eils, Jürgen; Eils, Roland; Laibe, Camille; Chelliah, Vijayalakshmi; Le Novere, Nicolas; Hermjakob, Henning
BioModels serves as a central repository of mathematical models representin
database summary
BioModels serves as a central repository of mathematical models representin
database summary
BioMuta and BioExpress Kahsay, Robel; Dingerdissen, Hayley; Torcivia, John; Hu, Yu; Chang, Ting-Chia; Mazumder, Raja
No description supplied
database summary
No description supplied
database summary
BioNumbers Ron Milo, Paul Jorgensen, Uri Moran, Griffin Weber, and Michael Springer
Useful biological numbers
database summary
Useful biological numbers
database summary
BioSample Faulconbridge, Adam; Burdett, Tony; Brandizi, Marco; Gostev, Mikhail; Pereira, Rui Pedro; Vasant, Drashtti; Sarkans, Ugis; Brazma, Alvis; Parkinson, Helen
Biological samples used as sources of sequence, structure or expression data
database summary
Biological samples used as sources of sequence, structure or expression data
database summary
BioSamples Courtot, Mélanie; Liyanage, Isuru; Xu, Fuqi; Gupta, Dipayan; Burdett, Tony
BioSamples database: FAIRer samples metadata to accelerate research data ma
database summary
BioSamples database: FAIRer samples metadata to accelerate research data ma
database summary
BioStudies Ugis Sarkans, Anja Füllgrabe, Ahmed Ali, Awais Athar, Ehsan Behrangi, Nestor Diaz, Silvie Fexova, Nancy George, Haider Iqbal, Sandeep Kurri, Jhoan Munoz, Juan Rada, Irene Papatheodorou, Brazma, Alvis
BioStudies database
database summary
BioStudies database
database summary
BioStudies Sarkans, Ugis; Gostev, Mikhail; Athar, Awais; Behrangi, Ehsan; Melnichuk, Olga; Ali, Ahmed; Minguet, Jasmine; Rada, Juan; Snow, Catherine; Tikhonov, Andrew; Brazma, Alvis; McEntyre, Johanna
No description supplied
database summary
No description supplied
database summary
BioThesaurus Liu H.1, Hu Z.Z.2 and Wu C.H.2
A collection of gene/protein names and associated sequences
database summary
A collection of gene/protein names and associated sequences
database summary
BIOZON Yona G., Birkland A.
A system for unification and analysis of heterogeneous biological data
database summary
A system for unification and analysis of heterogeneous biological data
database summary
BISC Thomas Juettemann 1,2 and Dietlind L. Gerloff 2
Binary SubComplexes in Proteins Database
database summary
Binary SubComplexes in Proteins Database
database summary
BloodChIP Pimanda, John; Thoms, Julie; Koch, Forrest; Raei, Alireza; Subramanian, Shruthi; Wong, Jason; Vafaee,
Transcription factor binding profiles in human haematopoietic stem/progenitor cells
database summary
Transcription factor binding profiles in human haematopoietic stem/progenitor cells
database summary
BloodChIP Pimanda, John; Thoms, Julie; Koch, Forrest; Raei, Alireza; Subramanian, Shruthi; Wong, Jason; Vafaee, Fatemeh
BloodChIP Xtra: an expanded database of comparative genome-wide transcription factor binding and gene-expression profiles in healthy human stem/progenitor subsets and leukemic cells
database summary
BloodChIP Xtra: an expanded database of comparative genome-wide transcription factor binding and gene-expression profiles in healthy human stem/progenitor subsets and leukemic cells
database summary
BloodSpot Frederik Otzen Bagger
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
database summary
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
database summary
BloodSpot Bagger, Frederik; GÃslason, Magnús; Demircan, Gül; Prachar, Marek; Furtwängler, Benjamin; Schwaller, Jurg; Schoof, Erwin M.; Porse, Bo; Rapin, Nicolas
BloodSpot 3.0
database summary
BloodSpot 3.0
database summary
BMRB Hoch, Jeffrey; Baskaran, Kumaran; Burr, Harrison; Chin, John; Eghbalnia, Hamid R.; Fujiwara, Toshimichi; Gryk, Michael; Iwata, Takeshi; Kojima, Chojiro; Kurisu, Genji; Maziuk, Dmitri; Miyanoiri, Yohei; Wedell, Jonathan R.; Wilburn, Colin; Yao, Hongyang; Y
Biological Magnetic Resonance Data Bank
database summary
Biological Magnetic Resonance Data Bank
database summary
bNAber Godzik, Adam; Eroshkin, Alexey; LeBlanc, Andrew; Weekes, Dana; Post, Kai; Li, Zhanwen; Rajput, Akhil; Butera, Sal; Burton, Dennis
A database of broadly neutralizing HIV-1 antibodies
database summary
A database of broadly neutralizing HIV-1 antibodies
database summary
Bovine Genome Christopher P. Childers, Justin T. Reese, Jaideep P. Sundaram, Donald C. Vile, C. Michael Dickens, Kevin L. Childs, Hanni Salih, Anna K. Bennett, Darren E. Hagen, David L. Adelson, and Christine G. Elsik
Bovine Genome Database
database summary
Bovine Genome Database
database summary
BRAD Wang, Xiaowu; Chen, Haixu; Wang, Tianpeng; He, Xiaoning; Cai, Xu; Lin, Runmao; Liang, Jianli; Wu, Jian; King, Graham J
Brassica Database
database summary
Brassica Database
database summary
Brain Catalog Pan, Siyu; Hongen, Kang; Liu, Xinxuan; Lin, Shiqi; 苑, 娜; Zhang, Zhang; Bao, Yi-Ming; Jia, Peilin
Genetics of brain disorders and related phenotypes
database summary
Genetics of brain disorders and related phenotypes
database summary
BrainBase Zhang, Zhang; Liu, Lin; Zhang, Yang; Niu, Guangyi; Li, Qianpeng; Li, Zhao; Zhu, Tongtong; Feng, Changrui; Liu, Xiaonan; Zhang, Yuansheng; Xu, Tianyi; Chen, Ruru; Teng, Xufei; Zhang, Rongqin; Zou, Dong; Ma, Lina
Brain disease knowledgebase
database summary
Brain disease knowledgebase
database summary
Brassica Genome T.A. Erwin1,2,3, E.G. Jewell1,2, C.G. Love1,2, G.A.C. Lim1,2, Xi Li1,2, R. Chapman1, J. Batley1, J. Stajich4, E. Mongin1,5, E. Stupka6, B. Ross7, G. Spangenberg1,2,3 and D. Edwards1,2,3
A database for Brassica genomic research
database summary
A database for Brassica genomic research
database summary
BreCAN-DB Chowdhury, Shantanu; Narang, Pankaj; Dhapola, Parashar
Breakpoint profiles of CANcer genomes
database summary
Breakpoint profiles of CANcer genomes
database summary
BRENDA Schomburg, Dietmar; Chang, Antje; Jeske, Lisa; Ulbrich, Sandra; Hofmann, Julia; Koblitz, Julia; Schomburg, Ida; Neumann-Schaal, Meina; Jahn, Dieter
Enzyme names and biochemical properties
database summary
Enzyme names and biochemical properties
database summary
Brix Peter Vanhee 1,2, Erik Verschueren 3, Lies Baeten 1,2, Francois Stricher 3, Luis Serrano 3,4, Frederic Rousseau 1,2 and Joost Schymkowitz 1,2
Protein building blocks for structural analysis, modeling and design
database summary
Protein building blocks for structural analysis, modeling and design
database summary
BSDB Mateusz Sikora 1, Joanna I. Sułkowska 2, Bartłomiej S. Witkowski 1 and Marek Cieplak 1
Biomolecule Stretching Database
database summary
Biomolecule Stretching Database
database summary
BSORF - Bacillus subtilis Open Reading Frames
Bacillus subtilis genome database at Kyoto U.
database summary
Bacillus subtilis genome database at Kyoto U.
database summary
BSRD Lei Li, Dandan Huang, Man Kit Cheung, Wenyan Nong, Qianli Huang and Hoi Shan Kwan
A repository of bacterial small regulatory RNA
database summary
A repository of bacterial small regulatory RNA
database summary
BTO Marion Gremse 1, Antje Chang 1, Ida Schomburg 1, Andreas Grote 1, Maurice Scheer 1, Christian Ebeling 1 and Dietmar Schomburg 1
BRENDA Tissue Ontology
database summary
BRENDA Tissue Ontology
database summary
BV-BRC Davis, James; Olson, Robert; Assaf, Rida; Brettin, Thomas,; Conrad, Neal; Cucinell, Clark; Dempsey, Donald; Dickerman, Allan; Dietrich, Emily; Kenyon, Ronald; Kuscuoglu, Mehmet; Lefkowitz, Elliot; Lu, Jian; Machi, Dustin; Macken, Catherine; Mao, Chunhong;
Bacterial and Viral Bioinformatics Resource Center
database summary
Bacterial and Viral Bioinformatics Resource Center
database summary
CADB - Conformational Angles DataBase of Proteins Sheik, S.S., Ananthalakshmi, P., Ramya Bhargavi, G., Sekar, K.
Conformation angles of protein structures, with associated crystallographic data
database summary
Conformation angles of protein structures, with associated crystallographic data
database summary
CADD Kircher, Martin; Schubach, Max; Maass, Thorben; Nazaretyan, Lusine
CADD v1.7: Using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions
database summary
CADD v1.7: Using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions
database summary
CADgene Hui Liu, Wei Liu, Yifang Liao, Long Cheng, Qian Liu, Xiang Ren, Lisong Shi, Xin Tu, Qing Kenneth Wang, and An-Yuan Guo
Coronary Artery Disease gene database
database summary
Coronary Artery Disease gene database
database summary
CADRE - Central Aspergillus Data Repository Mabey Gilsenan, Jane; Cooley, John; Bowyer, Paul
Central Aspergillus data repository
database summary
Central Aspergillus data repository
database summary
CaeNDR Andersen, Erik; Crombie, Timothy; McKeown, Ryan; Moya, Nicolas; Evans, Kathryn; Widmayer, Samuel; LaGrassa, Vincent; Roman, Natalie; Tursunova, Orzu; Zhang, Gaotian; Gibson, Sophia; Buchanan, Claire; Roberto, Nicole; Vieira, Rodolfo; Tanny, Robyn
CaeNDR, the Caenorhabditis Natural Diversity Resource
database summary
CaeNDR, the Caenorhabditis Natural Diversity Resource
database summary
CAGE Kawaji H.1, Kasukawa T.1,2, Fukuda S.2, Katayama S.2, Kai C.2, Kawai J.2,3, Carninci P.2,3, and Hayashizaki Y.2,3
CAGE tags for cap-analysis of gene expression
database summary
CAGE tags for cap-analysis of gene expression
database summary
CAGm: a repository of germline microsatellite variations in the 1000 genomes project Kinney, Nicholas;Titus-Glover, Kyle;Wren, Jonathan D;Varghese, Robin T;Michalak, Pawel;Liao, Han;Anandakrishnan, Ramu;Pulenthiran, Arichanah;Kang, Lin;Garner, Harold R
No description supplied
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No description supplied
database summary
CAMERA Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas, Abel Lin, Steve Peltier, Karen Stocks, Eric E. Allen, Mark Ellisman, Jeffrey Grethe, and John Wooley
Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis of metagenomic data
database summary
Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis of metagenomic data
database summary
CAMP Idicula-Thomas, Susan; Waghu, Faiza; Gopi, Lijin; Barai, Ram Shankar; Ramteke, Pranay; Nizami, Bilal
Collection of Anti-Microbial Peptides
database summary
Collection of Anti-Microbial Peptides
database summary
CAMP Idicula-Thomas, Susan; Gawde, Ulka; Chakraborty, Shuvechha; Waghu, Faiza; Barai, Ram; Khanderkar, Ashlesha; Indraguru, Rishikesh; Shirsat, Tanmay
CAMPR4: A database of natural and synthetic antimicrobial peptides
database summary
CAMPR4: A database of natural and synthetic antimicrobial peptides
database summary
Cancer RNA-Seq Nexus Liu, Chun-Chi; Li, Jian-Rong; Sun, Chuan-Hu; Li, Wenyuan,; Chao, Rou-Fang; Huang, Chieh-Chen; Zhou, X. Jasmine
No description supplied
database summary
No description supplied
database summary
Cancer3D Godzik, Adam; Porta Pardo, Eduard; Hrabe, Thomas
Mapping of cancer mutations to protein structures
database summary
Mapping of cancer mutations to protein structures
database summary
CancerGenes Higgins ME, Claremont M, Major JE, Sander C, Lash AE
A gene selection resource for cancer genome projects
database summary
A gene selection resource for cancer genome projects
database summary
CancerImmunityQTL Miao, Xiaoping (proxy) (contact); Tian, Jianbo; Cai, Yimin; Li, Yue; Lu, Zequn; Huang, Jinyu; Deng, Yao; Yang, Nan'; Wang, Xiaoyang; Ying, Pingting; Zhang, Shanshan; Zhu, Ying.; Zhang, Huilan; Zhong, Rong; Chang, Jiang
immunQTLs across multiple cancer types
database summary
immunQTLs across multiple cancer types
database summary
CancerMIRNome Li, Ruidong; Qu, Han; Wang, Shibo; Chater, John; Wang, Xuesong; Cui, Yanru; Yu, Lei; Zhou, Rui; Jia, Qiong; Traband, Ryan; Wang, Meiyue; Xie, Weibo; Yuan, Dongbo; Zhu, Jianguo; Zhong, Weide; Jia, Zhenyu,
miRNA profiles in cancer
database summary
miRNA profiles in cancer
database summary
CancerPPD Raghava, Gajender; Tyagi, Atul; Tuknait, Abhishek; Anand, Priya; Gupta, Sudheer; Sharma, Minakshi; Mathur, Deepika; Joshi, Anshika; Singh, Sandeep; Gautam, Ankur
Experimentally validated anticancer peptides
database summary
Experimentally validated anticancer peptides
database summary
CancerProteome Li, Yongsheng; Lv, Dezhong; Li, Donghao; Cai, Yangyang; Guo, Jiyu; Chu, Sen; Yu, Jiaxin; Liu, Kefan; Jiang, Tiantongfei; Ding, Na; Jin, Xiyun; Xu, Juan
CancerProteome: a resource for functionally deciphering proteome landscape in cancer
database summary
CancerProteome: a resource for functionally deciphering proteome landscape in cancer
database summary
CancerResource Jessica Ahmed 1, Thomas Meinel 1, Mathias Dunkel 1, Manuela S. Murgueitio 1, Robert Adams 1, Corinna Blasse 1, Andreas Eckert 1, Saskia Preissner 1 and Robert Preissner 1
Cancer-relevant proteins and compound interactions
database summary
Cancer-relevant proteins and compound interactions
database summary
CancerSCEM Xiao, Jingfa; Zeng, Jingyao; Zhang, Yadong.; Shang, Yunfei; Mai, Jialin; Shi, Shuo; Lu, Mingming; Bu, Congfan; Zhang, Zhewen; Zhang, Zaichao; Li, Yang; Du, Zhenglin1
Human cancer single-cell gene expression
database summary
Human cancer single-cell gene expression
database summary
CandidaDB C. d’Enfert1, S. Goyard1, S. Rodriguez-Arnaveilhe1, L. Frangeul2, L. Jones3, F. Tekaia4, O. Bader5, A. Albrecht5, L. Castillo6, A. Dominguez7, J. Ernst8, C. Fradin5, C. Gaillardin9, S. Garcia-Sanchez1, P. de Groot10, B. Hube5, F.M. Klis10, S. Krishnamurthy8, D. Kunze5, M.-C. Lopez7, A. Mavor11, N. Martin7, I. Moszer2, D. OnÉsime9, J. Perez Martin12, R. Sentandreu6, E. Valentin6 and A.J.P. Brown11
Candida albicans genome database
database summary
Candida albicans genome database
database summary
Candidate Cancer Gene Database Starr, Timothy; Abbott, Kenneth; Nyre, Erik; Abrahante, Juan; Ho, Yen-Yi; Isaksson Vogel, Rachel
Cancer genes identified in transposon-based forward genetic screens in mice
database summary
Cancer genes identified in transposon-based forward genetic screens in mice
database summary
canSAR Al-Lazikani, Bissan; DiMicco, Patrizio; Antolin, Albert; Mitsopoulos, Costas; Villasclaras Fernandez, Eloy; Sanfelice, Domenico; Dolciami, Daniela; Ramagiri, Pradeep; Mica, John; Tym, Joe; Gingrich, Philip; Hu, Huabin; Workman, P.
canSAR: update to the cancer translational research and drug discovery know
database summary
canSAR: update to the cancer translational research and drug discovery know
database summary
CanSAR Al-Lazikani, Bissan; Mitsopoulos, Costas; DiMicco, Patrizio; Villasclaras Fernandez, Eloy; Dolciami, Daniela; Holt, Esty; Mica, Iona; Coker, Elizabeth; Tym, Joe; Campbell, James; Che, Ka Hing; Ozer, Bugra; Kannas, Christos; Antolin, Albert; Workman, P.
Integrated cancer research and drug discovery resource
database summary
Integrated cancer research and drug discovery resource
database summary
CAPS-DB Narcis Fernandez-Fuentes
Classification of helix cappings in protein structures
database summary
Classification of helix cappings in protein structures
database summary
Carbohydrate Structure Database (CSDB) Toukach, Philip; Egorova, Ksenia
Carbohydrate Structure Database
database summary
Carbohydrate Structure Database
database summary
CARD McArthur, Andrew; Jia, Baofeng; Raphenya, Amogelang; Alcock, Brian; Waglechner, Nicholas; Guo, Peiyao; Tsang, Kara; Lago, Briony; Dave, Biren; Pereira, Sheldon; Sharma, Arjun; Doshi, Sachin; Courtot, Mélanie; Lo, Raymond; Williams, Laura; Frye, Jonathan; Elsayegh, Tariq; Sardar, Daim; Westman, Erin; Pawlowski, Andrew; Johnson, Timothy; Brinkman, Fiona; Wright, Gerard D.
Comprehensive Antibiotic Research Database
database summary
Comprehensive Antibiotic Research Database
database summary
CARD Alcock, Brian; Huynh, William; Chalil, Romeo; Smith, Keaton; Raphenya, Amogelang; Wlodarski, Mateusz; Edalatmand, Arman; Petkau, Aaron; Syed, Sohaib; Tsang, Kara; Baker, Sheridan; Dave, Mugdha; McCarthy, Madeline; Mukiri, Karyn; Nasir, Jalees; Golbon, Bah
CARD 2023: Expanded Curation, Support for Machine Learning, and Resistome P
database summary
CARD 2023: Expanded Curation, Support for Machine Learning, and Resistome P
database summary
CarpeDB Locke, C.J., Caldwell, K.A., Caldwell, G.A.
A database on the genetics of epilepsy
database summary
A database on the genetics of epilepsy
database summary
CaSNP Qingyi Cao, Meng Zhou, Xujun Wang, Cliff A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, and X. Shirley Liu
Cancer SNP data on copy number alterations
database summary
Cancer SNP data on copy number alterations
database summary
CASpedia Doudna, Jennifer A; Adler, Benjamin; Trinidad, Marena; Bellieny-Rabelo, Daniel; Zhang, Elaine; Karp, Hannah; Skopintsev, Petr; Thornton, Brittney; Weissman, Rachel; Yoon, Peter; Chen, LinXing; Hessler, Tomas; Eggers, Amy; Colognori, David; Boger, Ron; Doherty, Erin; Tsuchida, Connor; Tran, Ryan; Hofman, Laura; Shi, Honglue; Wasko, Kevin M.; Zhou, Zehan; Xia, Chenglong; Al-Shimary, Muntathar; Patel, Jaymin R.; Thomas, Vienna; Pattali, Rithu; Kan, Matthew; Vardapetyan, Anna; Yang, Alana; Lahiri, Arushi; Maxwell, Michaela; Murdock, Andrew; Ramit, Glenn; Henderson, Hope; Calvert, Roland W.; Bamert, Rebecca S.; Knott, Gavin; Lapinaite, Audrone; Pausch, Patrick; Cofsky, Joshua; Sontheimer, Erik; Wiedenheft, Blake; Fineran, Peter; Brouns, Stan; Sashital, Dipali; Thomas, Brian; Brown, Christopher; Goltsman, Daniela S. A.; Barrangou, Rodolphe; Siksnys, Virginijus; Banfield, Jillian; Savage, David
CasPEDIA Database: A Functional Classification System for Class 2 CRISPR-Cas Enzymes
database summary
CasPEDIA Database: A Functional Classification System for Class 2 CRISPR-Cas Enzymes
database summary
CATH Sillitoe, Ian; Bordin, Nicola; Dawson, Natalie; Waman, Vaishali; Ashford, Paul; Scholes, Harry; Pang, Camilla; Rauer, Clemens; Woodridge, Laurel; Sen, Neeladri; Abbasian, Mahnaz; Le Cornu, Sean; Lam, Su Datt; Berka, Karel; Hutařová Vařeková, Ivana; Svobodova, Radka; Lees, Jonathan; Orengo, Christine
Protein domain structures database
database summary
Protein domain structures database
database summary
CATMA - Complete Arabidopsis Transcriptome MicroArray
Arabidopsis gene sequence tags
database summary
Arabidopsis gene sequence tags
database summary
CauloBrowser Lasker, Keren; Schrader, Jared; Men, Yifei; Marshik, Tyler; Dill, David; McAdams, Harley; Shapiro, Lucy
Cell cycle program of Caulobacter crescentus
database summary
Cell cycle program of Caulobacter crescentus
database summary
CAZy Terrapon, Nicolas; Drula, Elodie; Garron, Marie-Line; Dogan, Suzan; Lombard, Vincent; Henrissat, Bernard
Carbohydrate-Active Enzymes database
database summary
Carbohydrate-Active Enzymes database
database summary
cBioPortal Nikolaus Schultz, Chris Sander, Jianjiong Gao, Bülent Arman Aksoy, Ugur Dogrusoz, Gideon Dresdner, Benjamin Gross, Gideon Dresdner, Rileen Sinha, Yichao Sun, Caitlin J. Byrne, Michael L. Heuer, Yevgeniy Antipin, Boris Reva, Arthur P. Goldberg, S. Onur Sumer, Yichao Sun, Anders Jacobsen, Rileen Sinha, Erik Larsson, Ethan Cerami,
The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
database summary
The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
database summary
CC+
A resource for elucidating sequence-to-structure relationships for coiled-coil folding and assembly
database summary
A resource for elucidating sequence-to-structure relationships for coiled-coil folding and assembly
database summary
CCDB Subhash M. Agarwal, Dhwani Raghav, Harinder Singh, and G.P.S. Raghava
Cervical cancer gene database
database summary
Cervical cancer gene database
database summary
CCDS Pruitt, Kim; Farrell, Catherine; O'Leary, Nuala; Harte, Rachel; Loveland, Jane; Wilming, Laurens; Wallin, Craig; Diekhans, Mark; Barrell, Daniel; Searle, Stephen; Aken, Bronwen; Hiatt, Susan; Frankish, Adam; Suner, Marie-Marthe; Rajput, Bhanu; Steward, Charles; Brown, Garth; Bennett, Ruth; Murphy, Michael; Wu, Wendy; Kay, Mike; Hart, Jennifer; Rajan, Jeena; Weber, Janet; Snow, Catherine; Riddick, Lillian; Hunt, Toby; Webb, David; Tamez, Pamela; Rangwala, Sanjida; McGarvey, Kelly; Mudge, Jonathan; Pujar, Shashikant; Shkeda, Andrei; Mudge, Jonathan; Gonzalez, Jose; Gilbert, James G. R.; Trevanion, Stephen; Baertsch, Robert; Harrow, Jennifer; Ostell, James; Haussler, David; Hubbard, Tim
Consensus set of annotated full-length human protein-coding regions
database summary
Consensus set of annotated full-length human protein-coding regions
database summary
CCDS Murphy, Terence; Pujar, Shashikant; O'Leary, Nuala; Farrell, Catherine; Loveland, Jane; Mudge, Jonathan M.; Wallin, Craig; GarcÃÂa Girón, Carlos; Diekhans, Mark; Barnes, If; Bennett, Ruth; Berry, Andrew.; Cox, Eric; Davidson, Claire; Goldfarb, Tamara; Hunt, Toby; Jackson, John; Joardar, Vinita; Kay, Mike; Kodali, Vamsi; MacÃÂas, José; Martin, Fergal; McAndrews, Monica; McGarvey, Kelly; Murphy, Michael,,; Rajput, Bhanu; Rangwala, Sanjida; Riddick, Lillian; Seal, Ruth; Suner, Marie-Marthe; Webb, David; Zhu, Sophia; Aken, Bronwen; Bruford, Elspeth; Bult, Carol; Frankish, Adam; Pruitt, Kim
Consensus coding sequence database
database summary
Consensus coding sequence database
database summary
ccmGDB Zhao, Zhongming; Kim, Pora; Cheng, Feixiong; Zhao, Junfei
Cancer Cell Metabolism Gene Database
database summary
Cancer Cell Metabolism Gene Database
database summary
ccNET Su, Zhen; You, Qi; Xu, Wenying; Zhang, Kang; Zhang, Liwei; Yi, Xin; Yao, Dongxia; Wang, Chunchao; Zhang, Xueyan; Zhao, Xinhua; Provart, Nicholas; Li, Fuguang
Co-expression networks for diploid and polyploid Gossypium
database summary
Co-expression networks for diploid and polyploid Gossypium
database summary
CCSD - Complex Carbohydrate Structure Database (CarbBank)
Complex carbohydrate structure database
database summary
Complex carbohydrate structure database
database summary
CDD Marchler-Bauer, Aron; Derbyshire, Myra; Gonzales, Noreen; Lu, Shennan; Chitsaz, Farideh; Geer, Lewis; Geer, Renata; He, Jane; Gwadz, Marc; Hurwitz, David; Lanczycki, Christopher; Lu, Fu; Marchler, Gabriele; Song, James; Thanki, Narmada; Wang, Zhouxi; Yamashita, Roxanne; Zhang, Dachuan; Zheng, Chanjuan; Bryant, Steve
Conserved domain database, includes protein domains from Pfam, SMART, COG and KOG databases
database summary
Conserved domain database, includes protein domains from Pfam, SMART, COG and KOG databases
database summary
CDD/SPARCLE Marchler-Bauer, Aron; Wang, Jiyao; Chitsaz, Farideh; Derbyshire, Myra; Gonzales, Noreen; Gwadz, Marc; Lu, Shennan; Marchler, Gabriele; Song, James; Thanki, Narmada; Yamashita, Roxanne; Yang, Mingzhang; Zhang, Dachuan,; Zheng, Chanjuan; Lanczycki, Christop
The Conserved Domain Database in 2023
database summary
The Conserved Domain Database in 2023
database summary
CDD/SPARCLE: the conserved domain database in 2020 Lu, Shennan;Wang, Jiyao;Chitsaz, Farideh;Derbyshire, Myra K;Geer, Renata C;Gonzales, Noreen R;Gwadz, Marc;Hurwitz, David I;Marchler, Gabriele H;Song, James S;Thanki, Narmada;Yamashita, Roxanne A;Yang, Mingzhang;Zhang, Dachuan;Zheng, Chanjuan;Lanczycki, Christopher J;Marchler-Bauer, Aron
No description supplied
database summary
No description supplied
database summary
CDS-DB Liu, Zhongyang; Chen, Ruzhen; Yang, Lele; Jiang, Jianzhou; Ma, Shurui; He, Mengqi; Mao, Yichao; Guo, Congcong; Kong, Xiangya; Zhang, Xinlei; Qi, Yaning; Li, Dong
CDS-DB, an omnibus for patient-derived gene expression signatures induced by cancer treatment
database summary
CDS-DB, an omnibus for patient-derived gene expression signatures induced by cancer treatment
database summary
CEBS Fostel, Jennifer; Martini, Cari; Liu, Ying; Gong, Hui.; Sayers, Nicole; Segura, German
CEBS update: curated toxicology database with enhanced tools for data integ
database summary
CEBS update: curated toxicology database with enhanced tools for data integ
database summary
CeCaFDB Xie, Xiaoyao; Liu, Zhijie; Shen, Tie; Wen, Han; Yi, Yin; Zhang, Zhengdong; Zhou, Xiangfei; Zhou, Wenwei; Shang, Chuanyu; Liu, Xiaoguang; Xin, Chenwei; Li, Gang; Jiang, Jiansi; Li, Chao; Rui, Bin; Yu, Guojun; Han, Mengshu; Li, Ruiyuan; You, Shanping
Carbon flux data of central metabolism in various organisms
database summary
Carbon flux data of central metabolism in various organisms
database summary
CEDAR KoÅŸaloÄŸluâ€\x90Yalçın, Zeynep; Blazeska, Nina; Vita, Randi; carter, hannah; Nielsen, Morten; Schoenberger, Stephen; Sette, Alex; Peters, Bjoern,
Cancer Epitope Database and Analysis Resouce
database summary
Cancer Epitope Database and Analysis Resouce
database summary
CeDR Jia, Peilin; Wang, Yin-Ying; Hongen, Kang; Xu, Tianyi; Hao, Lili; Bao, Yi-Ming
Drug responses in health and disease from scRNA-seq
database summary
Drug responses in health and disease from scRNA-seq
database summary
CEGA Zdobnov, Evgeny; Dousse, Aline; Junier, Thomas
Conserved Elements from Genomic Alignments
database summary
Conserved Elements from Genomic Alignments
database summary
Cell Image Library David Orloff
Images, videos, and animations of various cell types from diverse organisms
database summary
Images, videos, and animations of various cell types from diverse organisms
database summary
Cell Taxonomy Zhang, Zhang; Jiang, Shuai; Qian, Qiheng; Zhu, Tongtong; Zong, Wenting; Shang, Yunfei; Jin, Tong; Zhang, Yuansheng; Chen, Ming; Wu, Zishan; Chu, Yuan; Zhang, Rongqin; Luo, Sicheng; Jing, Wei; Zou, Dong; Bao, Yi-Ming; Xiao, Jingfa
Cell types and markers across species, tissues and conditions
database summary
Cell types and markers across species, tissues and conditions
database summary
Cell Tracer Guo, Qiuyan.; Wang, Peng; Liu, Qian; Hao, Yangyang2; Gao, Yue; Qi, Yue; Xu, Rongji; Chen, Hongyan; Xin, Mengyu; Wu, Xiaoting; Sun, Rui; Zhi, Hui1; zhang, Yunpeng`; Ning, Shangwei; Li, Xia
Multi-omics of cellular development trajectories
database summary
Multi-omics of cellular development trajectories
database summary
CellCircuits Mak H.C.1, Daly M.2, Gruebel B.2 and Ideker T.2
Molecular network models: from pairwise molecular interactions to whole pathways
database summary
Molecular network models: from pairwise molecular interactions to whole pathways
database summary
CellCommuNet Pan, Jianbo; Ma, Qinfeng; Li, Qiang; Zheng, Xiao
CellCommuNet: an atlas of cell–cell communication networks from single-cell RNA sequencing of human and mouse tissues in normal and disease states
database summary
CellCommuNet: an atlas of cell–cell communication networks from single-cell RNA sequencing of human and mouse tissues in normal and disease states
database summary
CellFinder Kurtz, Andreas; Stachelscheid, Harald; Seltmann, Stefanie; Lekschas, Fritz; Fontaine, Jean; Mah, Nancy; Neves, Mariana; Andrade-Navarro, Miguel; Leser, Ulf
Gene and protein expression, phenotype and images mapped to the cell types
database summary
Gene and protein expression, phenotype and images mapped to the cell types
database summary
CellLineNavigator Markus Krupp
A compendium of cell line expression profiles by microarray analysis
database summary
A compendium of cell line expression profiles by microarray analysis
database summary
CellMarker Hu, Congxue; Li, Tengyue; Xu, Yingqi; Zhang, Xinxin; Li, Feng'.; Bai, Jing..; Chen, Jing; Jiang, Wenqi; Yang, Kaiyue; Ou, Qi; Li, Xia; Wang, Peng; zhang, Yunpeng`
CellMarker 2.0: an updated database of manually curated cell markers in hum
database summary
CellMarker 2.0: an updated database of manually curated cell markers in hum
database summary
CellSTAR Yang, Qingxia; Zhang, Ying; Sun, Huaicheng; Zhang, Wei; HUANG, Shijie; Mou, Minjie; Zhang, Jinsong; Gao, Jianqing; Ge, Yichao; Zhu, Feng
CellSTAR: a comprehensive single-cell transcriptomic annotation resource
database summary
CellSTAR: a comprehensive single-cell transcriptomic annotation resource
database summary
CeNDR Andersen, Erik; Cook, Daniel; Zdraljevic, Stefan; Roberts, Joshua
C. elegans Natural Diversity Resource
database summary
C. elegans Natural Diversity Resource
database summary
CentrosomeDB Alves-Cruzeiro, J., Nogales-Cadenas, R., Pascual-Montano, A.
Human centrosomal proteins database
database summary
Human centrosomal proteins database
database summary
CFam C. Zhang, L. Tao, C. Qin, P. Zhang, S.Y. Chen, X. Zeng, F. Xu, Z. Chen, S.Y. Yang
Similarity-based classification of chemical compounds
database summary
Similarity-based classification of chemical compounds
database summary
CFEA: a cell-free epigenome atlas in human diseases Yu, Fulong;Li, Kai;Li, Shuangquan;Liu, Jiaqi;Zhang, Yan;Zhou, Meng;Zhao, Hengqiang;Chen, Hongyan;Wu, Nan;Liu, Zhihua;Su, Jianzhong
Epigenetic alterations, including 5-methylcytosine (5mC), 5-hydroxymethylcy
database summary
Epigenetic alterations, including 5-methylcytosine (5mC), 5-hydroxymethylcy
database summary
CFGP Lee, Yong-Hwan; Choi, Jaeyoung; Cheong, Kyeongchae; Jung, Kyongyong; Jeon, Jongbum; Lee, Gir-Won; Kang, Seogchan; Kim, Sangsoo; Lee, Yin-Won
Comparative Fungal Genomics Platform
database summary
Comparative Fungal Genomics Platform
database summary
cfOmics Lu, Zhi; Li, Mingyang; Zhou, Tianxiu; Han, Mingfei; Wang, Hongke; Bao, Pengfei; Tao, Yuhuan; Chen, Xiaoqing; Wu, Guansheng; Liu, Tianyou; Wang, Xiaojuan; Lu, Qian; Zhu, Yunping
cfOmics: A Cell-Free Multi-Omics Database for Diseases
database summary
cfOmics: A Cell-Free Multi-Omics Database for Diseases
database summary
CGD - Candida Genome Database Marek S. Skrzypek, Jonathan Binkley, Gail Binkley, Stuart R. Miyasato, Matt Simison, and Gavin Sherlock
Candida albicans genome database
database summary
Candida albicans genome database
database summary
CGDB Xue, Yu; Li, Shujing; Shui, Ke; Zhang, Ying.; Lv, Yongqiang; Ullah, Shahid; Deng, Wankun; Zhang, Luoying
Circadian Gene database
database summary
Circadian Gene database
database summary
ChannelsDB Berka, Karel ; Å paÄ\x8Dková, Anna; Vávra, OndÅ™ej; RaÄ\x8Dek, Tomáš; Sehnal, David; Svobodová, Radka; Bednar, David; Damborsky, Jiri; Bazgier, Vaclav
ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era
database summary
ChannelsDB 2.0: A Comprehensive Database of Protein Tunnels and Pores in AlphaFold Era
database summary
ChannelsDB Koca, Jaroslav; Pravda, Lukáš; Sehnal, David; Svobodová Vareková, Radka; Navrátilová, Veronika; Toušek, Dominik; Berka, Karel; Otyepka, Michal
No description supplied
database summary
No description supplied
database summary
ChEBI - Chemical Entities of Biological Interest de Matos P.1, Ennis M.1, Zbinden M.1, McNaught A.1, Alcántara R.1, Darsow M.1, Guedj M.1,2, Ashburner M.3 and Degtyarenko K.1
Small molecules, atoms, ions and radicals of biological interest
database summary
Small molecules, atoms, ions and radicals of biological interest
database summary
ChemBank Ferraiolo P.1, Bodycombe N.E.1, Brudz S.E.1, Clemons P.A.1, Eliasof S.1, George G.A.1, Happ M.P.1, Harris, E.1, Lach A.D.1, Muhlich, J.L. 1, Seiler K.P.1, Selfors L.M.1, Serrano M.A.1, Sullivan J.P.1, Sulthan N.B.1, Tevelev, A.1, Tolliday N.1 and Schreiber S.L.1,2
Structures and biological activities of small organic molecules
database summary
Structures and biological activities of small organic molecules
database summary
ChEMBL Zdrazil, Barbara; Felix, Eloy; Hunter, Fiona; Manners, Emma; Blackshaw, James; Corbett, Sybilla; De Veij, Marleen; Ioannidis, Harris; Mendez, David; Mosquera, Juan; Magariños, Maria Paula; Bosc, Nicolas; Arcila, Ricardo; Kizilören, Tevfik; Gaulton, Anna; Bento, A. Patricia; Adasme, Melissa; Monecke, Peter; Landrum, Gregory; Leach, Andrew R
Interaction of drugs and compounds with their targets
database summary
Interaction of drugs and compounds with their targets
database summary
ChemDB Chen J.H., Swamidass S.J., Dou Y., Linstead E. and Baldi P.
3D structures and properties of small molecules
database summary
3D structures and properties of small molecules
database summary
ChemFOnt Wishart, David; Jovel, Juan; Budinsky, Zachary; Oler, Eponine; Peters, Harrison; Milford, Ralph; Liu, Vicki; Sayeeda, Zinat; Mah, Robert; Wei, William S; Badran, Hasan; Lo, Elvis; Yamamoto, Mai; Djoumbou-Feunang, Yannick; Karu, Naama; Gautam, Vasuk
Chemical Functional Ontology
database summary
Chemical Functional Ontology
database summary
Chemical Probes Portal Antolin, Albert; Sanfelice, Domenico; Crisp, Alisa; Villasclaras Fernandez, Eloy; Mica, Iona; Chen, Yi; Collins, Ian; EDWARDS, Aled; Müller, Susanne; Al-Lazikani, Bissan; Workman, P.
Chemical probe assessment and selection
database summary
Chemical probe assessment and selection
database summary
ChemPert del Sol, Antonio; Zheng, Menglin; Okawa, Satoshi; Bravo, Miren; Chen, Fei; MartÃnez-Chantar, MarÃa
Transcriptomics responses to pertubagens in non-cancerous cells
database summary
Transcriptomics responses to pertubagens in non-cancerous cells
database summary
ChemProt Olivier Taboureau 1, Sonny Kim Nielsen 1, Karine Audouze 1, Nils Weinhold 1, Daniel Edsga„rd 1, Francisco S. Roque 1, Irene Kouskoumvekaki 1, Alina Bora 2, Ramona Curpan 2, Thomas Skøt Jensen 1, Søren Brunak 1 and Tudor I. Oprea 1,3
Disease Chemical Biology Database
database summary
Disease Chemical Biology Database
database summary
Chewie-NS Ramirez, Mário; Mamede, Rafael; Vila-Cerqueira, Pedro; Silva, Mickael; Carrico, Joao
Gene-by-gene schemas for microbial strain identification
database summary
Gene-by-gene schemas for microbial strain identification
database summary
ChickVD Wang J.1, He X.2,3, Ruan J.2,3, Dai M.2, Chen J.2, Zhang Y.1,2, Hu Y.2, Ye C.2, Li S.2, Cong L.2, Fang L.2, Liu B.2, Li S.1,2, Wang J.2, Burt D.W.4, Wong G.K.-S.2,5, Yu J.2,6, Yang H.2,6 and Wang J.1,2,7,8
Sequence variation in the chicken genome
database summary
Sequence variation in the chicken genome
database summary
ChimerDB Kim N.1, Kim P.1, Nam S.1, Shin S.2 and Lee S.1
Chimeric (fusion) sequences in human, rat and mouse
database summary
Chimeric (fusion) sequences in human, rat and mouse
database summary
ChIPBase Liang-Hu Qu
Decoding transcriptional regulation of lncRNA and microRNA genes from ChIP-Seq data
database summary
Decoding transcriptional regulation of lncRNA and microRNA genes from ChIP-Seq data
database summary
ChIPBase Yang, Jian-Hua; Huang, Junhong; Zheng, Wujian; Zhang, Ping; Lin, Qiao; Chen, Zhirong; Xuan, Jiajia; Liu, Chang; Wu, Di; Huang, Qiaojuan; Zheng, Lingling; Liu, Shurong; Zhou, Ke-Ren; Qu, Liang-Hu; Li, Bin
ChIPBase v3.0: The Encyclopedia of Transcriptional Regulations of Non-codin
database summary
ChIPBase v3.0: The Encyclopedia of Transcriptional Regulations of Non-codin
database summary
ChIPprimersDB: a public repository of verified qPCR primers for chromatin immunoprecipitation (ChIP) Kurtenbach, Stefan;Reddy, Rohit;Harbour, J William
No description supplied
database summary
No description supplied
database summary
ChiTaRS Frenkel-Morgenstern, Milana; Gorohovski, Alessandro; Vucenovic, Dunja; Maestre, Lorena; Valencia, Alfonso
Human, mouse and fruit fly chimeric transcripts and RNA-sequencing data
database summary
Human, mouse and fruit fly chimeric transcripts and RNA-sequencing data
database summary
ChlamDB Trestan Pillonel, Florian Tagini, Claire Bertelli and Gilbert Greub
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum
database summary
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum
database summary
Chloroplast Genome Database Cui L., Veeraraghavan N., Richter A., Wall K., Jansen R.K., Leebens-Mack J., Makalowska I. and dePamphilis C.W.
Chloroplast genome database
database summary
Chloroplast genome database
database summary
ChromLoops Zhou, Qiangwei; Cheng, Sheng; Zheng, Shanshan; Wang, Zhenji; Guan, Pengpeng; Zhu, Zhixian; Huang, Xingyu; Zhou, Cong1; Li, Guoliang
Protein-mediated chromatin loops
database summary
Protein-mediated chromatin loops
database summary
CircleBase Mao, Fengbiao; zhao, xiaolu; Shi, Leisheng; Ruan, Shasha; Bi, Wenjian; Li, Mingkun.; Qiao, Jie`
Human extrachromosomal circular DNA
database summary
Human extrachromosomal circular DNA
database summary
circMine Zhang, Wenliang; Liu, Yang; Min, Zhuochao; Liang, Guodong; Mo, Jing; Ju, Zhen; Zeng, Binghui,; Guan, Wen; Zhang, Yan; Chen, Jianliang; Zhang, Qianshen; Li, Hanguang; Zeng, Chunxia; Wei, Yanjie; Chan, Godfrey Chi Fung
Human circRNA transcriptome in health and diease
database summary
Human circRNA transcriptome in health and diease
database summary
CircNet Huang, Hsien-Da; Liu, Yu-Chen; Li, Jian-Rong; Sun, Chuan-Hu; Andrews, Erik; Chao, Rou-Fang; Lin, Feng-Mao; Weng, Shun-Long; Hsu, Sheng-Da; Huang, Chieh-Chen; Cheng, Chao; Liu, Chun-Chi
Tissue-specific circRNA expression profiles and regulatory networks
database summary
Tissue-specific circRNA expression profiles and regulatory networks
database summary
CircNet Huang, Hsien-Da; Chen, Yigang; Yao, Lantian; Tang, Yun; Jhong, Chase; Wan, Jingting; Chang, Jingyue; Cui, Shidong; Luo, Yijun; Cai, Xiaoxuan; Li, Wenshuo; Chen, Qi; Huang, Hsi-Yuan; Wang, Zhuo; Chen, Weiming; Chang, Tzu-Hao; Wei, Fengxian; Lee, Tzong-Yi
CircNet 2.0: an updated database for exploring circular RNA regulatory netw
database summary
CircNet 2.0: an updated database for exploring circular RNA regulatory netw
database summary
circRNADisease Jiang, Tao; Sun, Zhi-Yan; Yang, Chang-Lin; Huang, Lijie; Mo, Zong-Chao; Zhang, Ke-Nan; Fan, Wen-Hua; Wang, Kuan-Yu; Wu, Fan`; Wang, Jiguang; Meng, Lin; Zhao, Zheng
CircRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations
database summary
CircRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations
database summary
CirGRDB Sun, zhongsheng; Li, Xianfeng; Shi, Leisheng; Zhang, Kun; Wei, Wenqing; Liu, Qi' ,; Mao, Fengbiao; Li, Jinchen; Cai, Wanshi; Chen, Huiqian; Teng, Huajing; Li, Jia-Da
No description supplied
database summary
No description supplied
database summary
cisRED Robertson A.G.1, Bilenky M.1, Lin K.1, He A.1, Yuen, W.1, Dagpinar M.1, Varhol R.1, Teague K.1, Griffith O.L.1, Zhang X.1, Pan, Y.1, Hassel M.1, Sleumer M.C.1, Pan, W.1, Pleasance E.D.1, Chuang, M.1, Hao H.1, Li Y.Y.1, Robertson N.1, Fjell C.1, Li B.1, Montgomery S.B.1, Astakhova T.1, Zhou J.2, Sander J.2, Siddiqui A.S.1 and Jones S.J.M.1
Phylogenetically conserved regulatory DNA sequence motifs
database summary
Phylogenetically conserved regulatory DNA sequence motifs
database summary
Cistrome Data Browser Meyer, Clifford; Taing, Len; Dandawate, Ariaki; L'Yi, Sehi; Gehlenborg, Nils; Brown, Myles
Cistrome Data Browser: integrated search, analysis, and visualization of chromatin data
database summary
Cistrome Data Browser: integrated search, analysis, and visualization of chromatin data
database summary
CistromeDB Liu, Xiaole; Mei, Shenglin; Qin, Qian; Wu, Qiu; Sun, Hanfei; Zheng, Rongbin; Zang, Chongzhi; Zhu, Muyuan; Wu, Jiaxin; Shi, Xiaohui; Len, Taing; Liu, Tao; Brown, Myles; Meyer, Cliff
ChIP-Seq and DNase-Seq data in human and mouse
database summary
ChIP-Seq and DNase-Seq data in human and mouse
database summary
CIViCdb Krysiak, Kilannin; Danos, Arpad M; Saliba, Jason; McMichael, Joshua F; Coffman, Adam; Kiwala, Susanna; Barnell, Erica; Sheta, Lana; Grisdale, Cameron; Kujan, Lynzey; Pema, Shahil; Lever, Jake; Ridd, Sarah; Spies, Nicholas; Andric, Veronica; Chiorean, Andr
Clinical interpretation of variants in cancer
database summary
Clinical interpretation of variants in cancer
database summary
CleanEx
Expression reference database, linking heterogeneous expression data to facilitate cross-dataset comparisons
database summary
Expression reference database, linking heterogeneous expression data to facilitate cross-dataset comparisons
database summary
ClinicalOmicsDB Zhang, Bing; Moon, Chang In; Elizarraras, John; Lei, Jonathan; Jia, Byron
ClinicalOmicsDB – Exploring molecular associations of oncology drug responses in clinical trials
database summary
ClinicalOmicsDB – Exploring molecular associations of oncology drug responses in clinical trials
database summary
ClinVar Maglott, Donna; Landrum, Melissa; Church, Deanna; Lee, Jennifer M; Riley, George; Jang, Wonhee; Rubinstein, Wendy
ClinVaR is an archive centralizing the management of human sequence variation with clinical significance.
database summary
ClinVaR is an archive centralizing the management of human sequence variation with clinical significance.
database summary
ClinVar Landrum, Melissa; Lee, Jennifer M; Benson, Mark; Brown, Garth; Chen, Chao -; Chitipiralla, Shanmuga; Gu, Baoshan; Hart, Jennifer; Hoffman, Douglas; Jang, Wonhee; Karapetian, Karen; Katz, Kenneth; Liu, Chunlei; Maddipatla, Zenith; Malheiro, Adriana; McDaniel, Kurt; Ovetsky, Michael; Riley, George; Zhou, Zhigang'; Holmes, J.; Kattman, Brandi; Maglott, Donna
ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, publ
database summary
ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, publ
database summary
CLIPZ Mohsen Khorshid 1, Christoph Rodak 1 and Mihaela Zavolan 1
Experimentally-determined binding sites of RNA-binding proteins
database summary
Experimentally-determined binding sites of RNA-binding proteins
database summary
CloneDB Valerie Schneider
Clones and libraries: sequence data, map positions and distributor information
database summary
Clones and libraries: sequence data, map positions and distributor information
database summary
ClusterCAD Keasling, Jay; Eng, Clara; Backman, Tyler; Bailey, Constance; Magnan, Christophe; Martin, Hector; Katz, Leonard; Baldi, Pierre
No description supplied
database summary
No description supplied
database summary
ClusterCAD Tao, Xavier; LaFrance, Sarah; Xing, Yifei; Nava, Alberto; Martin, Hector; Keasling, Jay D.; Backman, Tyler W.H.
ClusterCAD 2.0: an updated computational platform for chimeric type I polyk
database summary
ClusterCAD 2.0: an updated computational platform for chimeric type I polyk
database summary
CMAUP Chen, Yu Zong; Hou, Dongyue; Lin, Hanbo; Yuhan, Feng; Zhou, Kaicheng; Li, Xingxiu; Yang, Yuan; Wang, Shuaiqi; Yang, Xue; Wang, Jiayu; Zhao, Hui4; Zhang, Xuyao; Fan, Jiajun; Lu, SongLin; Wang, Dan; Zhu, Lyuhan; Ju, Dianwen; Zeng, Xian
CMAUP database update 2023: extended functional and association information of useful plants for biomedical research
database summary
CMAUP database update 2023: extended functional and association information of useful plants for biomedical research
database summary
CMDB Jin, Xin; Li, Zhichao; Jiang, Xiaosen; Fang, Mingyan; Huang, Shujia; Bai, Yong; Liu, Siyang
Whole-genome sequencing data of 141,000 Chinese individuals
database summary
Whole-genome sequencing data of 141,000 Chinese individuals
database summary
CMNPD Liu, Zhenming; Lyu, Chuanyu; Chen, Tong; Qiang, Bo; Liu, Ningfeng; Wang, Heyu; Zhang, Liang-ren
Comprehensive Marine Natural Product Database
database summary
Comprehensive Marine Natural Product Database
database summary
CMPD Tang, Petrus; Huang, Po-Jung; Lee, Chi -Ching; Tan, Bertrand; Yeh, Yuan-Ming; Chu, Julie; Chen, Ting-Wen; Lee, Cheng-Yang; Gan, Ruei-Chi; Liu, Hsuan
Cancer Mutant Proteome Database
database summary
Cancer Mutant Proteome Database
database summary
CNCDatabase Khurana, Ekta; Liu, Eric Minwei; Martinez-Fundichely, Alexander; Bollapragada, Rajesh; Spiewack, Maurice
Cancer drivers at non-coding regions
database summary
Cancer drivers at non-coding regions
database summary
cncRNAdb Wang, Dong; Huang, Yan; Wang, Jing; Zhao, Yue; Wang, Huafeng; Liu, Tianyuan; Li, Yuhe; Cui, Tianyu; Li, Weiyi; Feng, Yige; Luo, Jiaxin; Gong, Jiaqi; Ning, Lin; Zhang, Yong; Zhang, Yang
Coding and non-coding RNA
database summary
Coding and non-coding RNA
database summary
CODEX Göttgens, Berthold; Sánchez Castillo, Manuel; Ruau, David; Wilkinson, Adam; Ng, Felicia; Hannah, Rebecca; Diamanti, Evangelia; Lombard, Patrick; Wilson, Nicola
ChIP-Seq, RNA-Seq and DNase-Seq data for haematopoietic and embryonic stem cells
database summary
ChIP-Seq, RNA-Seq and DNase-Seq data for haematopoietic and embryonic stem cells
database summary
CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates Meyer, Xavier;Dib, Linda;Salamin, Nicolas
No description supplied
database summary
No description supplied
database summary
Coexpedia Lee, Insuk; Yang, Sunmo; Kim, Chanyoung; Hwang, Sohyun; Kim, Eiru; Kim, Hyojin; Shim, Hongsuk
Gene co-expression data mapped to medical subject headings (MeSH).
database summary
Gene co-expression data mapped to medical subject headings (MeSH).
database summary
Coffee Genome Hub dereeper, alexis; Sidibe-Bocs, Stephanie; Rouard, Mathieu; Guignon, Valentin; Ravel, Sébastien; Tranchant-Dubreuil, Christine; Poncet, Valérie; Garsmeur, Olivier; Lashermes, Philippe; Droc, Gaetan
Coffee community genomics, genetics and breeding data and analysis tools
database summary
Coffee community genomics, genetics and breeding data and analysis tools
database summary
COG Galperin, Michael Y.; Wolf, Yuri; Makarova, Kira; Vera Alvarez, Roberto; Landsman, David; Koonin, Eugene
No description supplied
database summary
No description supplied
database summary
COGEME Phytopathogenic Fungi and Oomycete EST Database Soanes, D.M., Talbot, N.J.
Phytopathogenic fungi and oomycete EST database
database summary
Phytopathogenic fungi and oomycete EST database
database summary
CollecTF Erill, Ivan; Kilic, Sefa; White, Elliot; Sagitova, Dinara
Experimentally-verified bacterial transcription factor binding sites
database summary
Experimentally-verified bacterial transcription factor binding sites
database summary
COLOCdb Jia, Peilin; Pan, Siyu; Hongen, Kang; Liu, Xinxuan; Li, Shuhua; Yang, Peng; Wu, Mingqiu; Yuan, Na; Lin, Shiqi; Zheng, Qiwen
COLOCdb: a comprehensive resource for multi-model colocalization of complex traits
database summary
COLOCdb: a comprehensive resource for multi-model colocalization of complex traits
database summary
COLOMBOS v2.0: An ever expanding collection of bacterial expression compendia Pieter Meysman1,2, Paolo Sonego3, Luca Bianco3, Qiang Fu4, Daniela Ledezma-Tejeida5, Socorro Gama-Castro5, Veerle Liebens4, Jan Michiels4, Kris Laukens1,2, Kathleen Marchal4,6,7, Julio Collado-Vides5 and Kristof Engelen3,4
COLections Of Micrcroarrays for Bacterial OrganismS
database summary
COLections Of Micrcroarrays for Bacterial OrganismS
database summary
Colorectal Cancer Atlas Mathivanan, Suresh; Chisanga, David; Keerthikumar, Shivakumar; Pathan, Mohashin; Ariyaratne, Dinuka; Kalra, Hina; Boukouris, Stephanie; Mathew, Nidhi; Ang, Ching-Seng; Sieber, Oliver; Mariadason, John; Dasgupta, Ramanuj,; Chilamkurti, Naveen
Genomic and proteomic annotations from colorectal cancer cell lines
database summary
Genomic and proteomic annotations from colorectal cancer cell lines
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COMBATdb Knight, Julian; Wang, Dapeng; Kumar, Vinod; Burnham, Katie; Mentzer, Alexander; Marsden, Brian D.
COVID-19 Multi-omics Blood Atlas
database summary
COVID-19 Multi-omics Blood Atlas
database summary
COMe - Co-Ordination of Metals etc. Degtyarenko, K., Contrino, S.
Classification of bioinorganic proteins (metalloproteins and some other complex proteins)
database summary
Classification of bioinorganic proteins (metalloproteins and some other complex proteins)
database summary
Comparasite Watanabe J.1, Wakaguri H.2, Sasaki M.2, Suzuki Y.2 and Sugano S.2
A database for comparative study of parasite cDNAs
database summary
A database for comparative study of parasite cDNAs
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Comparative Genometrics Roten C.-A.H.1, Gamba P.2, Barblan J.-L.1 and Karamata D.1
DNA walks, nucleotide skews and other biometric measures of prokaryotic genomes
database summary
DNA walks, nucleotide skews and other biometric measures of prokaryotic genomes
database summary
Complex Portal Hermjakob, Henning; Meldal, Birgit; Perfetto, Livia; Combe, Colin; Lubiana, Tiago; Ferreira Cavalcante, João; Bye-A-Jee, Hema; Waagmeester, Andra; del-Toro, Noemi; Shrivastava, Anjali; Barrera, Elisabeth; Wong, Edith; Mlecnik, Bernhard; Bindea, Gabriela;
Macromolecular complexes from key model organisms
database summary
Macromolecular complexes from key model organisms
database summary
CompoDynamics Zhang, Zhang; Jiang, Shuai; Du, Qiang; Feng, Changrui; Ma, Lina
Sequence composition and characteristics across genomes
database summary
Sequence composition and characteristics across genomes
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ComPPI Csermely, Peter; Veres, Daniel; Gyurko, David; Thaler, Benedek; Szalay, Kristof; Fazekas, David; Korcsmaros, Tamas
Protein-protein interactions linked to subcellular localization in human, worm, yeast, and fly
database summary
Protein-protein interactions linked to subcellular localization in human, worm, yeast, and fly
database summary
ComSin Michail Yu. Lobanov, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Jessica H. Fong, Anna R. Panchenko, and Oxana V. Galzitskaya
Protein structures in bound and unbound states
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Protein structures in bound and unbound states
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ConjuPepDB Mándity, István M; Balogh, Balazs; Ivanczi, Marton; Nizami, Bilal; Beke-Somfai, Tamás
Drug-peptide conjugates
database summary
Drug-peptide conjugates
database summary
ConoServer David Craik
Sequence and structures of peptides expressed by marine cone snails
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Sequence and structures of peptides expressed by marine cone snails
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ConsensusPathDB Kamburov, Atanas; Stelzl, Ulrich; Lehrach, Hans; Herwig, Ralf
Database for integration of human functional interactions
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Database for integration of human functional interactions
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ConsensusPathDB Herwig, Ralf; Kamburov, Atanas
ConsensusPathDB 2022 - molecular interactions update as a resource for netw
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ConsensusPathDB 2022 - molecular interactions update as a resource for netw
database summary
ConVarT Kaplan, Oktay; Pir, Mustafa; Bilgin, Halil; Sayici, Ahmet; Coskun, Fatih; Torun, Furkan; Zhao, Pei; Kang, Yahong; Cevik, Sebiha
Orthologous variants between human, mouse and worm
database summary
Orthologous variants between human, mouse and worm
database summary
CORG - A database for COmparative Regulatory Genomics Dieterich, C., Wang, H., Rateitschak, K., Luz, H., Vingron, M.
Conserved non-coding sequence blocks
database summary
Conserved non-coding sequence blocks
database summary
CORUM Ruepp, Andreas; Tsitsiridis, George; Steinkamp, Ralph; Giurgiu, Madalina; Brauner, Barbara; Fobo, Gisela; Frishman, Goar; Montrone, Corinna
CORUM: the comprehensive resource of mammalian protein complexes––2022
database summary
CORUM: the comprehensive resource of mammalian protein complexes––2022
database summary
CoryneRegNet Baumbach, Jan; Pauling, Josch; Röttger, Richard; Tauch, Andreas; Azevedo, Vasco
Corynebacterial transcription factors and regulatory networks
database summary
Corynebacterial transcription factors and regulatory networks
database summary
COSMIC Sondka, Zbyslaw; Bindal Dhir, Nidhi; Carvalho-Silva, Denise; Jupe, Steven; Madhumita, Madhumita; McLaren, Karen; Starkey, Mike; Ward, Sari; Wilding, Jennifer; Ahmed, Madiha; Argasinska, Joanna; Beare, David; Singh Chawla, Manpreet; Duke, Stephen; Fasanella, Ilaria; Neogi, Avirup Guha; Haller, Susan; Hetenyi, Balazs; Hodges, Leonie; Holmes, Alex; Lyne, Rachel; Maurel, Thomas; Nair, Sumodh; Pedro, Helder; Sangrador-Vegas, Amaia; Schuilenburg, Helen; Sheard, Zoe; Yong, Siew Yit; Teague, Jon
Catalogue of Somatic Mutations in Cancer
database summary
Catalogue of Somatic Mutations in Cancer
database summary
CottonGen Main, Dorrie; Yu, Jing; Jung, Sook; Cheng, Chun-Huai; Ficklin, Stephen; Zheng, Ping; Lee, Taein; Jones, Don; Percy, Richard
Cotton genomics, genetics and breeding
database summary
Cotton genomics, genetics and breeding
database summary
CottonMD Yang, Qing-Yong; Yang, Zhiquan; Wang, Jing; Huang, Yiming; Wang, Shengbo; LuLu, Wei; DongXu, Liu; Weng, Yonglin; Xiang, Jinhai; Zhu, Qiang; Yang, Zhaoen; Nie, Xinhui; Yu, Yu; Yang, Zuoren
Multi-omics data on cotton
database summary
Multi-omics data on cotton
database summary
COV2Var Zhou, Xiaobo1; Feng, Yuzhou; Yi, Jiahao; Yang, Lin; Wen, Jianguo; Zhao, Weiling; Kim, Pora
COV2Var, a function annotation database of SARS-CoV-2 genetic variation
database summary
COV2Var, a function annotation database of SARS-CoV-2 genetic variation
database summary
CoV3D Pierce, Brian; Gowthaman, Ragul; Guest, Johnathan; Yin, Rui; Adolf-Bryfogle, Jared; Schief, William
Experimental coronavirus protein structures
database summary
Experimental coronavirus protein structures
database summary
COVID19 Drug Repository Frenkel-Morgenstern, Milana; Tworowski, Dmitry; Gorohovski, Alessandro; Mukherjee, Sumit; Carmi, Gon; Levy, Eliad; Detroja, Rajesh; Biswas Mukherjee, Sunanda
Curated papers on COVID-19 drugs and drug repurposing
database summary
Curated papers on COVID-19 drugs and drug repurposing
database summary
COVID19db Zhang, Wenliang; Zhang, Yan; Min, Zhuochao; Mo, Jing; Ju, Zhen; Guan, Wen; Zeng, Binghui,; Liu, Yang; Chen, Jianliang; Zhang, Qianshen; Li, Hanguang; Zeng, Chunxia; Wei, Yanjie; Chan, Godfrey Chi Fung
SARS-CoV-2 transcriptomics and drug discovery
database summary
SARS-CoV-2 transcriptomics and drug discovery
database summary
CovInDB Hou, Tingjun; Du, Hongyan; Gao, Junbo; Weng, Gaoqi; Chai, Xin; Pang, Jinping; Kang, Yu; Li, Dan.`; Cao, Dong-Sheng
Covalent Inhibitor DataBase
database summary
Covalent Inhibitor DataBase
database summary
CovInter Han, Lianyi; AMAHONG, KUERBANNISHA; Zhang, Wei; ZHOU, Ying; Zhang, Song; Yin, Jiayi; Li, Fengcheng; Xu, Hongquan; Yan, Tianci; Yue, Zixuan; Liu, Yuhong; Hou, Tingjun; Qiu, Yunqing; Tao, Lin; Zhu, Feng
Interactions between coronavirus RNAs and host proteins
database summary
Interactions between coronavirus RNAs and host proteins
database summary
CovPDB Günther, Stefan; Gao, Mingjie; Moumbock, Aurélien A. F.; Qaseem, Ammar; Xu, Qianqing
Covalent inhibitors and their complexes
database summary
Covalent inhibitors and their complexes
database summary
COXPRESdb Okamura, Yasunobu; Aoki, Yuichi; Obayashi, Takeshi; Tadaka, Shu; Ito, Satoshi; Narise, Takafumi; Kinoshita, Kengo
Coexpressed genes and networks in human and mouse
database summary
Coexpressed genes and networks in human and mouse
database summary
COXPRESdb Obayashi, Takeshi; Kodate, Shun; Hibara, Himiko; Kagaya, Yuki; Kinoshita, Kengo
COXPRESdb v8: an animal gene coexpression database navigating from a global
database summary
COXPRESdb v8: an animal gene coexpression database navigating from a global
database summary
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference Obayashi, Takeshi;Kagaya, Yuki;Aoki, Yuichi;Tadaka, Shu;Kinoshita, Kengo
No description supplied
database summary
No description supplied
database summary
CPLM Xue, Yu; Zhang, Weizhi; Tan, Xiaodan; Lin, Shaofeng; Gou, Yujie; Han, Cheng; Zhang, Chi; Ning, Wanshan; Wang, Chenwei
Compendium of Protein Lysine Modifications
database summary
Compendium of Protein Lysine Modifications
database summary
CPLM Xue, Yu; Liu, Zexian; Wang, Yongbo; Gao, Tianshun; Pan, Zhicheng; Cheng, Han; Yang, Qing; Cheng, Zhongyi; Guo, Anyuan; Ren, Jian
Integrated database of protein lysine acetylation
database summary
Integrated database of protein lysine acetylation
database summary
cpnDB Hill, J.E.1, Penny, S.L.2, Goh, S.H.3 and Hemmingsen, S.M.4
Chaperonin database
database summary
Chaperonin database
database summary
CPPsite Agrawal, Piyush; Bhalla, Sherry; Usmani, Salman; Singh, Sandeep; Chaudhary, Kumardeep; Raghava, Gajendra; Gautam, Ankur
Experimentally validated Cell Penetrating Peptides
database summary
Experimentally validated Cell Penetrating Peptides
database summary
CR Cistrome Zhang, Yong; Wang, Qixuan; Huang, Jinyan; Sun, Hanfei; Liu, Jing; Wang, Juan; Wang, Qian; Qin, Qian; Mei, Shenglin; Zhao, Chengchen; Liu, Xiaole
Chromatin Regulators and histone modifications in human and mouse
database summary
Chromatin Regulators and histone modifications in human and mouse
database summary
CR-EST - Crop ESTs C. KÃœnne, M. Lange, T. Funke, H. Miehe, T. Thiel, I. Grosse, and U. Scholz
Barley, wheat, pea, and potato ESTs
database summary
Barley, wheat, pea, and potato ESTs
database summary
CR2Cancer Zhang, Jiangwen; Ru, Beibei; Sun, Jianlong; Tong, Yin; Wong, Ching Ngar; Chandra, Aditi; Tang, Acacia Tsz So; Chow, Larry Ka Yue; Wun, Wai Lam; Levitskaya, Zarina
No description supplied
database summary
No description supplied
database summary
CRAMdb Hu, Shengwei; Lei, Bingbing; Xu, Yueren; Lei, Yunjiao; Li, Cunyuan; Zhou, Ping1; Wang, Limin; Yang, Qing; Li, Xiaoyue; Li, Fulin; Liu, Chuyang; Cui, Chaowen; Chen, Tong; ni, wei
Microbiome metagenomes across animals
database summary
Microbiome metagenomes across animals
database summary
CRdb Li, Chunquan; Zhang, Yimeng; Zhang, Yuexin; Song, Chao; Zhao, Xilong; Ai, Bo; Wang, Yuezhu; Zhou, Liwei; Zhu, Jiang6; Feng, Chenchen; Xu, Liyan,; Wang, Qiuyu; Sun, Hong; Fang, Qiaoli; Xu, Xiaozheng; Li, En-Min
Human chromatin regulators
database summary
Human chromatin regulators
database summary
CREAMMIST Suphavilai, Chayaporn; Yingtaweesittikul, Hatairat; Wu, Jiaxi; Mongia, Aanchal; Peres, Rafael; Ko, Karrie; Nagarajan, Niranjan
Cancer drug dose-reponse across cell lines
database summary
Cancer drug dose-reponse across cell lines
database summary
CREMOFAC Agrawal S.1,3, Chetan Kumar C.1 and M.R.S. Rao1,2
Chromatin remodeling factors
database summary
Chromatin remodeling factors
database summary
CRISP-view
High-throughput genetic screening based on CRISPR/Cas9 or RNA-interference
database summary
High-throughput genetic screening based on CRISPR/Cas9 or RNA-interference
database summary
CRISPR-view Li, Wei; Cui, Yingbo; Cheng, Xiaolong; Chen, Qing; Song, Bicna; Chiu, Anthony; Gao, Yuan; Dawson, Tyson; Chao, Lumen; Zhang, Wubing; Li, Dian; Zeng, Zexian; Yu, Jijun; Li, Zexu; Teng, Fei; Peng, Shaoliang
Functional genetic screens
database summary
Functional genetic screens
database summary
CRISPRbase Fan, Jibiao; Shi, Leisheng; Liu, Qi .; Zhu, Zhipeng; Wang, Fan; Song, Runxian; Su, Jimeng; Chen, Xiao,.; Li, Kailong; Xue, Lixiang; Sun, Lichao; Mao, Fengbiao,
CRISPR Base Editing
database summary
CRISPR Base Editing
database summary
CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs Chen, Wen;Zhang, Guoqiang;Li, Jing;Zhang, Xuan;Huang, Shulan;Xiang, Shuanglin;Hu, Xiang;Liu, Changning
No description supplied
database summary
No description supplied
database summary
crisprSQL Störtz, Florian; Minary, Peter,
CRISPR/Cas9 Off-Target Cleavage Assays
database summary
CRISPR/Cas9 Off-Target Cleavage Assays
database summary
CRISPRz Burgess, Shawn; Varshney, Gaurav; Zhang, Suiyuan; Pei, Wuhong; Adomako-Ankomah, Ashrifia; Fohtung, Jacob; Schaffer, Katherine; Carrington, Blake; Maskeri, Anoo; Slevin, Claire; Wolfsberg, Tyra; Sood, Raman
CRISPR single guide RNAs to zebrafish genes
database summary
CRISPR single guide RNAs to zebrafish genes
database summary
CropGS-Hub Tan, Cong; Chen, Jiaxin; Zhu, Min; Zhang, Chenyang; Wang, Zhihan; Ni, Xuemei; Liu, Yanlin; Wei, Tong; Wei, Xiaofeng; Fang, Xiaodong; Huang, Xuehui; Qiu, Jie; Liu, Huan
CropGS-Hub: A Comprehensive Database of Genotype and Phenotype Resources for Genomic Prediction in Major Crops
database summary
CropGS-Hub: A Comprehensive Database of Genotype and Phenotype Resources for Genomic Prediction in Major Crops
database summary
CROST Guoliang, Wang; Wu, Song; xiong, zhuang; Qu, Hongzhu; Fang, Xiangdong; Bao, Yi-Ming
CROST: a comprehensive repository of spatial transcriptomics
database summary
CROST: a comprehensive repository of spatial transcriptomics
database summary
Crystallography Open Database Saulius Grazulis
Crystal structures of small molecules
database summary
Crystal structures of small molecules
database summary
CSA - Catalytic Site Atlas Furnham N, Holliday GL, de Beer TA, Jacobsen JO, Pearson WR, Thornton JM.
Enzyme active sites and catalytic residues in enzymes of known 3D structure
database summary
Enzyme active sites and catalytic residues in enzymes of known 3D structure
database summary
CSCD He, Chunjiang; Feng, Jing1; Chen, Wenbo; Dong, Xin1; Wang, Jun; Mei, Xiangfei; Deng, Jin; Yang, Siqi; Ma, Ronghui; Zhuo, Chenjian; zhang, rongyu; Huang, Xiaoyu; Shao, Lin; Guo, Jing; Liu, Juan; Li, Feng; Wu, Ying; Han, Leng
CSCD2: An integrated interactional database of cancer-specific circular RNA
database summary
CSCD2: An integrated interactional database of cancer-specific circular RNA
database summary
CSCD Han, Leng; Xia, Siyu; Feng, Jing; Chen, Ke; Ma, Yanbing; Gong, Jing'; Cai, Fangfang; Gao, Yang; Jin, Yuxuan; Chang, Hong; Wei, Lei; He, Chunjiang ,
Circular RNA (circRNA) is a large group of RNA family extensively existed i
database summary
Circular RNA (circRNA) is a large group of RNA family extensively existed i
database summary
CSD - Cambridge Structural Database
Crystal structure information for organic and metal organic compounds.
database summary
Crystal structure information for organic and metal organic compounds.
database summary
CSDBase - Cold Shock Domain database Weber, M.H.W., Doll, N., Marahiel, M.A.
Cold shock domain-containing proteins
database summary
Cold shock domain-containing proteins
database summary
CSEA-DB Zhao, Zhongming; Dai, Yulin; Hu, Ruifeng; Manuel, Astrid; Liu, Andi; Jia, Peilin
Cell type specificity of genetic traits
database summary
Cell type specificity of genetic traits
database summary
CSVS Dopazo, Joaquin; Pena-Chilet, Maria; Roldan, Gema; Perez-Florido, Javier; Ortuno, Francisco Manuel; Carmona, Rosario; Aquino, Virginia; Lopez-Lopez, Daniel; Loucera, Carlos; Fernandez-Rueda, Jose; Gallego, Asunción; Garcia-Garcia, Francisco; Gonzalez-Neir
Spanish genomes and exomes
database summary
Spanish genomes and exomes
database summary
CSVS - The Collaborative Spanish Variability Server MarÃÂa Peña-Chilet1,2,3, Gema Roldán1, Javier Perez-Florido1,3,4, Francisco M. Ortuño1,3,4, Rosario Carmona1, Virginia Aquino 1, Daniel Lopez-Lopez1,3, Carlos Loucera 1,3, Jose L. Fernandez-Rueda 1, Asunción Gallego5, Francisco GarcÃÂa-Garcia6, Anna González-Neira7, Guillermo Pita7, RocÃÂo Núñez-Torres7, Javier Santoyo-López8, Carmen Ayuso 9,Pablo Minguez9,10, Almudena Avila-Fernandez 9, Marta Corton9, Miguel Ã\x81ngel Moreno- Pelayo11, MatÃÂas Morin11, Alvaro Gallego-Martinez12,13 Jose A. Lopez-Escamez12,13, Salud Borrego 14,15, Guillermo Antiñolo14,15, Jorge Amigo 16, Josefa Salgado-Garrido17,Sara Pasalodos-Sanchez17, Beatriz Morte18, The Spanish Exome Crowdsourcing Consortium, Ã\x81ngel Carracedo16,19, Ã\x81ngel Alonso17, JoaquÃÂn Dopazo1,2,3,4
The knowledge of the genetic variability of the local population is of utmo
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The knowledge of the genetic variability of the local population is of utmo
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CTCF Binding Site Database
Experimentally identified and predicted CTCF binding sties
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Experimentally identified and predicted CTCF binding sties
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CTD Davis, Allan; Wiegers, Thomas; Johnson, Robin; Sciaky, Daniela; Wiegers, Jolene; Mattingly, Carolyn
Comparative Toxicogenomics Database (CTD): update 2023
database summary
Comparative Toxicogenomics Database (CTD): update 2023
database summary
CTD - Comparative Toxicogenomics Database Davis, Allan Peter; Johnson, Robin; Murphy, Cynthia; Sciaky, Daniela; Wiegers, Jolene; Wiegers, Thomas; Mattingly, Carolyn
A knowledgebase for curated chemical-gene-disease networks
database summary
A knowledgebase for curated chemical-gene-disease networks
database summary
CTR-DB Liu, Zhongyang; Liu, Jiale; Liu, Xinyue; Wang, Xun; Xie, Qiao-Sheng; Zhang, Xinlei; Kong, Xiangya; He, Mengqi; Yang, Yuting; Deng, Xinru; Yang, Lele; Qi, Yaning; Li, Jiajun; Liu, Yuan; Yuan, Liying; Diao, Lihong; He, Fuchu; Li, Dong
Patient-derived clinical transcriptomes and drug responses
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Patient-derived clinical transcriptomes and drug responses
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CuGenDB Fei, Zhangjun; Yu, Jingyin; Wu, Shan; Sun, Honghe; Wang, Xin; Tang, Xuemei; Guo, Shaogui; Zhang, Zhonghua; Huang, Sanwen; Xu, Yong "; Weng, Yiqun; Mazourek, Michael; McGregor, Cecilia; Renner, Susanne; Branham, Sandra; Kousik, Chandrasekar; Wechter, Patri
CuGenDBv2: An updated database for cucurbit genomics
database summary
CuGenDBv2: An updated database for cucurbit genomics
database summary
CutDB Igarashi Y., Eroshkin A., Gramatikova S., Gramatikoff K., Ying Z., Smith J.W., Osterman, A.L. and Godzik, A.
Community annotation resource for proteases, their substrates and cleavage sites
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Community annotation resource for proteases, their substrates and cleavage sites
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Cyanolyase Frederic Partensky
Sequences and motifs of the phycobilin lyase protein family
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Sequences and motifs of the phycobilin lyase protein family
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CyanoOmicsDB Tan, Xiaoming; Zhou, Peng; Wang, Li; Liu, Hai; Li, Chunyan; Li, Zhimin; Wang, Jinxiang
Cyanobacteria genomics and transcriptomics
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Cyanobacteria genomics and transcriptomics
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Cyanorak Garczarek, Laurence; Guyet, Ulysse; Doré, Hugo; Farrant, Gregory; Hoebeke, Mark; Guéguen-Brillet, Loraine; Bisch, Antoine; Ferrieux, Mathilde; Siltanen, Jukka; Corre, Erwan; Le Corguillé, Gildas; Ratin, Morgane; Pitt, Franes; Ostrowski, Martin; Conan, Mae
Comparative genomics of cyanobacteria
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Comparative genomics of cyanobacteria
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CycleBase Santos, Alberto; Wernersson, Rasmus; Jensen, Lars
Gene expression profiles from cell-cycle microarray studies
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Gene expression profiles from cell-cycle microarray studies
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Cyclonet Kolpakov F.1,2, Poroikov V.3, Sharipov R.1,2,4, Kondrakhin Y1,2, Zakharov A.3, Lagunin A.3, Milanesi L.5, and Kel A.6
A database on cell cycle regulation
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A database on cell cycle regulation
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Dali database L. Holm
Fold classification based on structure-structure alignment of proteins
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Fold classification based on structure-structure alignment of proteins
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DAnCER Andrei L. Turinsky 1, Brian Turner 1, Rosanne C. Borja 1, James A. Gleeson 1, Michael Heath 1, Shuye Pu 1, Thomas Switzer 1, Dong Dong 2,3, Yunchen Gong 2,3, Tuan On 1,4, Xuejian Xiong 1, Andrew Emili 2,3,4, Jack Greenblatt 2,3,4, John Parkinson 1,4,5,, Zhaolei Zhang 2,3,4 and Shoshana J. Wodak 1,4,5
Disease-Annotated Chromatin Epigenetics Resource
database summary
Disease-Annotated Chromatin Epigenetics Resource
database summary
DASHR Wang, Li-San; Leung, Yuk Yee; Kuksa, Pavel; Amlie-Wolff, Alexandre; Valladares, Otto; Ungar, Lyle; Kannan, Sampath; Gregory, Brian
Database of human small non-coding RNA
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Database of human small non-coding RNA
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Database for Bacterial Group II Introns Candales, Manuel; Duong, Adrian; Hood, Keyar; Li, Teng; Neufeld, Ryan; Sun, Runda; McNeil, Bonnie; Wu, Li; Jarding, Ashley; Zimmerly, Stev
Database for mobile group II introns
database summary
Database for mobile group II introns
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Database of Genomic Variants (DGV) MacDonald, Jeffrey; Ziman, Robert; Yuen, Ryan; Feuk, Lars; Scherer, Stephen
Curated catalogue of human genomic structural variation
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Curated catalogue of human genomic structural variation
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Database of Genomic Variants archive (DGVa) Lappalainen I, Skipper L, Maguire M, Spalding D, Flicek P
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants.
database summary
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants.
database summary
Database resources of the National Center for Biotechnology Information Sayers, Eric; Beck, Jeff; Bolton, Evan; Brister, J.; Chan, Jessica; Comeau, Donald; Connor, Ryan; DiCuccio, Michael; Farrell, Catherine; Feldgarden, Michael; Fine, Anna; Funk, Kathryn; Hatcher, Eneida; Hoeppner, Marilu; Kane, Megan; Kannan, Sivakumar; Katz, Kenneth; Kelly, Chris; Klimke, William; Kim, Sunghwan; Kimchi, Avi; Landrum, Melissa; Lathrop, Stacy; Lu, Zhiyong; Malheiro, Adriana; Marchler-Bauer, Aronunreliable; Murphy, Terence; Phan, Lon; Prasad, Arjun; Pujar, Shashikant; Sawyer, Amanda; Schmieder, Erin; Schneider, Valerie; Schoch, Conrad; Sharma, Shobha; Thibaud-Nissen, Francoise; Trawick, Bart; Venkatapathi, Thilakam; Wang, Jiyao; Pruitt, Kim; Sherry, Stephen
The National Center for Biotechnology Information (NCBI) provides a large s
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The National Center for Biotechnology Information (NCBI) provides a large s
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Datanator Roth, Yosef D; Lian, Zhouyang; Pochiraju, Saahith; Shaikh, Bilal; Karr, Jonathan R
Integrated database of molecular data for integrative biochemical modeling
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Integrated database of molecular data for integrative biochemical modeling
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DBAASP Malak Pirtskhalava, Anthony A Amstrong, Maia Grigolava, Mindia Chubinidze, Evgenia Alimbarashvili, Boris Vishnepolsky, Andrei Gabrielian, Alex Rosenthal, Darrell E Hurt, Michael Tartakovsky
Database of Antimicrobial Activity and Structure of Peptides
database summary
Database of Antimicrobial Activity and Structure of Peptides
database summary
DBAli Marti-Renom M.A.1, Pieper U.2, Eswar N.2, Webb B.2, Madhusudhan M.S.2, and Sali A.2
Pairwise and multiple structure alignments
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Pairwise and multiple structure alignments
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dbAMP Lee, Tzong-Yi; Jhong, Chase; Yao, Lantian; Pang, Yuxuan; Li, Zhongyan; Chung, Chia-Ru; Wang, Rulan; Li, Shangfu; Li, Wenshuo; Luo, Mengqi; Ma, Renfei; Huang, Yuqi; Zhu, Xiaoning; Zhang, Jiahong; Feng, Hexiang; Cheng, Qifan; Wang, Chunxuan; Xi, Kun; Wu, Li
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced sca
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dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced sca
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dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data Jhong, Jhih-Hua;Chi, Yu-Hsiang;Li, Wen-Chi;Lin, Tsai-Hsuan;Huang, Kai-Yao;Lee, Tzong-Yi
No description supplied
database summary
No description supplied
database summary
dbAPIS Yin, Yanbin; Yan, Yuchen; Zheng, Jinfang2; Zhang, Xinpeng
dbAPIS: a database of anti-prokaryotic immune system genes
database summary
dbAPIS: a database of anti-prokaryotic immune system genes
database summary
DBASS5/3 Emanuele Buratti 1, Martin Chivers 2, Gyulin Hwang 2 and Igor Vorechovsky 2
Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites
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Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites
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dbCAN-PUL Yin, Yanbin; Ausland, Catherine; Zheng, Jinfang; Yi, Haidong; Yang, Bowen; Li, Tang; Feng, Xuehuan; Zheng, Bo
Experimentally characterized CAZyme gene clusters
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Experimentally characterized CAZyme gene clusters
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dbCAN-seq Yin, Yanbin; Huang, Le; Zhang, Han; Wu, Peizhi; Entwistle, Sarah; Li, Xueqiong; Yohe, Tanner; Yi, Haidong; Yang, Zhenglu
No description supplied
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No description supplied
database summary
dbCAN_seq Yin, Yanbin; Zheng, Jinfang1; Hu, Boyang; Zhang, Xinpeng; Ge, Qiwei; Yan, Yuchen; Piyush, Ved; Huang, Le
dbCAN-seq update: CAZyme gene clusters and substates in microbiomes
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dbCAN-seq update: CAZyme gene clusters and substates in microbiomes
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dbCoRC Huang, Moli; Chen, Ye; Yang, Manqiu; Guo, Anyuan; Xu, Ying; Xu, Liang; Koeffler, H. Phillip
No description supplied
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No description supplied
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dbCRID Fanlou Kong, Jing Zhu, Jun Wu, Jianjian Peng, Ying Wang, Qing Wang, Songbin Fu, Li-Lian Yuan, and Tongbin Li
Database of Chromosomal Rearrangements In Diseases
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Database of Chromosomal Rearrangements In Diseases
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dbDEMC Yang, Zhen; Wu, Liangcai; Wang, Anqiang; Tang, Wei; Zhao, Yi; Zhao, Haitao; Teschendorff, Andrew E
Differentially expressed miRNAs in human cancers
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Differentially expressed miRNAs in human cancers
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dbDEPC Xie, Lu; He, Ying; Zhang, Menghuan; Ju, Yuanhu; Yu, Zhonghao; Lv, Daqing; Sun, Han; Yuan, Weilan; He, Hei; Zhang, Jianshe; Li, Hong ,; Li, Jing ,; Wang-Sattler, Rui; Li, Yixue; Zhang, Guoqing
Differentially Expressed Proteins in Human Cancer
database summary
Differentially Expressed Proteins in Human Cancer
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dbGaP Feolo, Michael; Tryka, Kimberly; Hao, Luning; Sturcke, Anne; Jin, Yumi; Wang, Zhen; Ziyabari, Lora; Lee, Moira; Popova, Natalia; Sharopova, Nataliya; Kimura, Masato
Database of Genotypes and Phenotypes
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Database of Genotypes and Phenotypes
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dbGuide Chari, Raj; Gooden, Alexander; Evans, Christine; Sheets, Timothy; Clapp, Michelle
Manually curated and functionally validated guide RNAs
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Manually curated and functionally validated guide RNAs
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dbLEP Dou L.1, Wang Y.2, Wu S.1, Wang X.2, Mao Y.2, Li L.2, Tang L.1, Wang X.1, Zhao D.2, He F.1 and Zhu Y.1
Liver proteome expression profiles
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Liver proteome expression profiles
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dbMAE Savova, Virginia; Patsenker, Jonathan; Vigneau, Sebatien; Gimelbrant, Alexander
Database of monoallelic expression
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Database of monoallelic expression
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dbPSHP Wang, Junwen J; Li, Mulin; Wang, Lily; Xia, ZhengYuan; Wong, Maria; Sham, Pak
A database of recent positive selection across human populations
database summary
A database of recent positive selection across human populations
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dbPTM Lee, Tzong-Yi; Li, Zhongyan; Li, Shangfu; Luo, Mengqi; Jhong, Jhih-Hua; Li, Wenshuo; Yao, Lantian; Pang, Yuxuan; Wang, Zhuo; Wang, Rulan; Ma, Renfei; Huang, Yuqi; Zhu, Xiaoning; Cheng, Qifan; Feng, Hexiang; Zhang, Jiahong; Wang, Chunxuan; Hsu, Justin Bo-K
dbPTM in 2022: an updated database for exploring regulatory networks and fu
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dbPTM in 2022: an updated database for exploring regulatory networks and fu
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dbPTM Lee, Tzong-Yi; Su, Min-Gang; Huang, Kai-Yao; Lu, Cheng-Tsung; Kao, Hui-Ju; Chang, Ya-Han
Post-translational modifications of proteins
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Post-translational modifications of proteins
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dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications Huang, Kai-Yao;Lee, Tzong-Yi;Kao, Hui-Ju;Ma, Chen-Tse;Lee, Chao-Chun;Lin, Tsai-Hsuan;Chang, Wen-Chi;Huang, Hsien-Da
No description supplied
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No description supplied
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dbRIP Song L.1, Wang J.1, Liang P.1, Grover D.2, Batzer M.A.2
Retrotransposon insertion polymorphisms in human
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Retrotransposon insertion polymorphisms in human
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dbSAP Shi, Tieliu; Cao, Ruifang; Shi, Yan; Chen, Shuangguan; Ma, Yimin; Chen, Jiajun; Yang, Juan; Chen, Geng
Single Amino acid polymorphisms: SNP-derived variation in human proteins
database summary
Single Amino acid polymorphisms: SNP-derived variation in human proteins
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dbSNO Chen, Yi-Ju; Lu, Cheng-Tsung; Su, Min-Gang; Huang, Kai-Yao; Ching, Wei-Chieh; Yang, Hsiao-Hsiang; Liao, Yen-Chen; Chen, Yu-Ju; Lee, Tzong-Yi
A database of protein S-nitrosylation
database summary
A database of protein S-nitrosylation
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dbSNP-Q Scott F. Saccone, Jiaxi Quan, Gaurang Mehta, Raphael Bolze, Prasanth Thomas, Ewa Deelman, Jay A. Tischfield, and John P. Rice
GWAS prioritization tool
database summary
GWAS prioritization tool
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DBTGR Sierro N.1, Kusakabe T.2, Park K-J.1, Yamashita R.1, Kinoshita K.1,3 and Nakai K.1
A database of tunicate (Ciona) gene regulation
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A database of tunicate (Ciona) gene regulation
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DBTMEE Nakai, Kenta; Park, Sung-Joon; Ohsugi, Miho; Shirahige, K
DataBase of Transcriptome in Mouse Early Embryos
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DataBase of Transcriptome in Mouse Early Embryos
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DBTSS Suzuki, Ayako; Wakaguri, Hiroyuki; Yamashita, Riu; Kawano, Shin; Tsuchihara, Katsuya; Sugano, Sumio; Suzuki, Yutaka; Nakai, Kenta
Database of Transcriptional Start Sites
database summary
Database of Transcriptional Start Sites
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DBTSS/DBKERO Suzuki, Yutaka; Suzuki, Ayako; Kawano, Shin; Mituyama, Toutai; Suyama, Mikita; Kanai, Yae; Shirahige, K; Sasaki, Hiroyuki; Tokunaga, Katsushi; Tsuchihara, Katsuya; Sugano, Sumio; Nakai, Kenta
No description supplied
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No description supplied
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dbVar Deanna Church
Structural variation in chromosomes: inversions, translocations, insertions and deletions
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Structural variation in chromosomes: inversions, translocations, insertions and deletions
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DDA Wu, Wei; Liang, Yu; Yuan, Qingqing; Zheng, Qijie; Mei, Zilv; Song, Yawei; Yan, Huan; Yang, Jiajie; Wu, Shuheng; Yuan, Jiao
DNA Damage Atlas: an atlas of DNA damage and repair
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DNA Damage Atlas: an atlas of DNA damage and repair
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DDBJ Tanizawa, Yasuhiro; Fujisawa, Takatomo; Kodama, Yuichi; Kosuge, Takehide; Mashima, Jun; Tanjo, Tomoya; Nakamura, Yasukazu<
All known nucleotide and protein sequences
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All known nucleotide and protein sequences
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DDBJ Database updates and computational infrastructure enhancement Ara, Takeshi; Kodama, Yuichi; Tokimatsu, Toshiaki; Fukuda, Asami; Kosuge, Takehide; Mashima, Jun; Tanizawa, Yasuhiro; Tanjo, Tomoya; Ogasawara, Osamu; Fujisawa, Takatomo; Nakamura, Yasukazu; Arita, Masanori
The Bioinformation and DDBJ Center (https://www.ddbj.nig.ac.jp) in the Nati
database summary
The Bioinformation and DDBJ Center (https://www.ddbj.nig.ac.jp) in the Nati
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DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data Kodama, Yuichi;Mashima, Jun;Kosuge, Takehide;Ogasawara, Osamu
No description supplied
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No description supplied
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DDinter Cao, Dong-Sheng; Xiong, Guoli; Yang, Zhijiang; Yi, Jiacai; Wang, Ningning; Wang, Lei; Zhu, Huimin; Wu, Chengkun; Lu, Aiping; Liu, Shao; Hou, Tingjun
Drug-drug interactions
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Drug-drug interactions
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DDMGD Bin Raies, Arwa; Mansour, Hicham; Incitti, Roberto; Bajic, Vladimir
Associations between genes methylated in diseases
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Associations between genes methylated in diseases
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Death Domain database Hyun Ho Park
Protein interaction data for Death Domain superfamily
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Protein interaction data for Death Domain superfamily
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DECIPHER Swaminathan, Ganesh; Bragin, Eugene; Chatzimichali, Eleni; Wright, Caroline; Hurles, Matthew; Firth, Helen; Bevan, A.
Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources
database summary
Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources
database summary
Decoys-R-Us Ram Samudrala and Michael Levitt
Computer-generated protein conformations based on sequence data
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Computer-generated protein conformations based on sequence data
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deepBase Yang, Jian-Hua; Xie, Fangzhou; Liu, Shurong; Wang, Junhao; Xuan, Jia-Jia; Zhang, Xiaoqin; Qu, Liang-Hu; Zheng, Lingling
No description supplied
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No description supplied
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Defensins Knowledgebase Seebah S.1, Anita S.2, Zhuo S.W.2, Yong H.C.2, Chua H.2, Chuon D.2, Beuerman R.1, Verma C.S.2
Antimicrobial peptides of the defensin family
database summary
Antimicrobial peptides of the defensin family
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DEG Zhang, Ren; Luo, Hao.; Lin, Yan; Liu, Tao; Lai, Fei-Liao; Zhang, Chun-Ting; Gao, Feng
No description supplied
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No description supplied
database summary
DEG - Database of Essential Genes Zhang, Ren; Luo, Hao; Lin, Yan; Gao, Feng ,; Zhang, Chun-Ting
Database of essential genes from bacteria and yeast
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Database of essential genes from bacteria and yeast
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Degradome Database
Proteases, protease inhibitors and protease mutations in human, chimpanzee, mouse, and rat
database summary
Proteases, protease inhibitors and protease mutations in human, chimpanzee, mouse, and rat
database summary
denovo-db Turner, Tychele; Yi, Qian; Krumm, Niklas; Huddleston, John; Hoekzema, Kendra; Stessman, Holly; Doebley, Anna-Lisa; Bernier, Raphael; Nickerson, Debbie; Eichler, Evan E.
Human de novo gene variants detected by parent-child sequencing
database summary
Human de novo gene variants detected by parent-child sequencing
database summary
DescribePROT Sushmita Basu, Bi Zhao, Bálint Biró, Eshel Faraggi, Jörg Gsponer, Gang Hu, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Johannes Söding, Martin Steinegger, Duolin Wang, Kui Wang, Dong Xu, Jian Zhang, Lukasz Kurgan
The DescribePROT database provides convenient access to billions of the ami
database summary
The DescribePROT database provides convenient access to billions of the ami
database summary
DESM Bajic, Vladimir; Salhi, Adil; Essack, Magbubah; Radovanvic, Aleksandar; Marchand, Benoit; Bougouffa, Salim; Antunes, André; Simões, Marta; Lafi, Feras; Motwalli, Olaa; Bokhari, Ameerah; Malas, Tareq; Al Amoudi, Soha; Othoum, Ghofran; Alam, Intikhab; Mineta, Katsuhiko; Gao, Xin'; Hoehndorf, Robert; Archer, John A. C.; Gojobori, Takashi
Microbial knowledge exploration systems
database summary
Microbial knowledge exploration systems
database summary
DGIdb Griffith, Obi; Wagner, Alex; Coffman, Adam; Ainscough, Benjamin; Spies, Nicholas; Skidmore, Zachary; Campbell, Katie; Krysiak, Kilannin; Pan, Deng; McMichael, Joshua; Eldred, James; Walker, Jason; Wilson, Richard; Mardis, Elaine; Griffith, Malachi
Drug-gene interaction database
database summary
Drug-gene interaction database
database summary
DGIdb Cannon, Matthew; Stevenson, James; Stahl, Kathryn; Basu, Rohit; Coffman, Adam; Kiwala, Susanna; McMichael, Joshua; Kuzma, Kori; Morrissey, Dorian; Cotto, Kelsy; Mardis, Elaine R; Griffith, Obi; Griffith, Malachi; Wagner, Alex
DGIdb 5.0: Rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms
database summary
DGIdb 5.0: Rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms
database summary
DGIdb Wagner, Alex H; Cotto, Kelsy; Feng, Yang-Yang; Kiwala, Susanna; Coffman, Adam; Spies, Gregory; Wollam, Alex; Spies, Nicholas; Griffith, Obi; Griffith, Malachi
DIANA-TarBase v8 (http://www.microrna.gr/tarbase) is a reference database d
database summary
DIANA-TarBase v8 (http://www.microrna.gr/tarbase) is a reference database d
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DIANA-LncBase Karagkouni, Dimitra;Paraskevopoulou, Maria D;Tastsoglou, Spyros;Skoufos, Giorgos;Karavangeli, Anna;Pierros, Vasilis;Zacharopoulou, Elissavet;Hatzigeorgiou, Artemis G
DIANA-LncBase v3.0 (www.microrna.gr/LncBase) is a reference repository with
database summary
DIANA-LncBase v3.0 (www.microrna.gr/LncBase) is a reference repository with
database summary
diArk Kollmar, Martin; Kollmar, Lotte; Hammesfahr, Björn; Simm, Dominic
A database of eukaryotic sequencing projects
database summary
A database of eukaryotic sequencing projects
database summary
Diatom EST Database
ESTs from two diatom algae, Thalassiosira pseudonana and Phaeodactylum tricornutum
database summary
ESTs from two diatom algae, Thalassiosira pseudonana and Phaeodactylum tricornutum
database summary
DictyBase
Genome information, literature and experimental resources for Dictyostelium discoideum
database summary
Genome information, literature and experimental resources for Dictyostelium discoideum
database summary
DIDA Lenaerts, Tom; Gazzo, Andrea; Daneels, Dorien; Cilia, Elisa; Bonduelle, Maryse; Abramowicz, Marc; Van Dooren, Sonia; Smits, Guillaume
DIgenic disease DAtabase
database summary
DIgenic disease DAtabase
database summary
DIGGER List, Markus; Louadi, Zakaria; Yuan, Kevin; Gress, Alexander; Tsoy, Olga; Kalinina, Olga; Baumbach, Jan; Kacprowski, Tim
Alternative splicing and protein-protein interactions
database summary
Alternative splicing and protein-protein interactions
database summary
Digital Ageing Atlas de Magalhães, João Pedro (contact); Craig, Thomas; Smelick, Chris; Tacutu, Robi; Wuttke, Daniel; Wood, Shona; Stanley, Henry; Janssens, Georges; Savitskaya, Ekaterina; Moskalev, Alexey; Arking, Robert
Human ageing-related data
database summary
Human ageing-related data
database summary
Digital Development Database Bao, Zhirong; Santella, Anthony; Kovacevic, Ismar; Herndon, Laura; Hall, David; Du, Zhuo
Developmental phenomics, cell-specific gene functions and cell differentiation in C. elegans
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Developmental phenomics, cell-specific gene functions and cell differentiation in C. elegans
database summary
DIMA
Domain interaction map: experimental and predicted protein domain interactions
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Domain interaction map: experimental and predicted protein domain interactions
database summary
DirectRMDB Chen, Kunqi; Zhang, Yuxin; Jie, Jiang; Ma, Jiongming; Wei, Zhen; Wang, Yue; Song, Bowen; Meng, Jia; Jia, Gui-Fang; de Magalhães, João Pedro; Rigden, Daniel J.; huang, daiyun
RNA modifications from direct RNA sequencing
database summary
RNA modifications from direct RNA sequencing
database summary
DISCO Chen, Jinmiao; Li, Mengwei; Zhang, Xiaomeng; Siong, Ang Kok; Ling, Jingjing; Raman, Sethi; Lee, Nicole; Ginhoux, Florent
Deep Integration of Single-Cell Omics
database summary
Deep Integration of Single-Cell Omics
database summary
Disease Ontology Baron, J. Allen; Johnson, Claudia Sanchez-Beato; Schor, Michael A.; Olley, Dustin; Nickel, Lance; Felix, Victor; Munro, James B.; Bello, Susan M.; Bearer, Cynthia; Lichenstein, Richard; Bisordi, Katharine; Koka, Rima; Greene, Carol; Schriml, Lynn M.
Ontology for a variety of human diseases
database summary
Ontology for a variety of human diseases
database summary
Disease Ontology Knowledgebase Baron, J. Allen; Johnson, Claudia Sanchez-Beato; Schor, Michael A.; Olley, Dustin; Nickel, Lance; Felix, Victor; Munro, James B.; Bello, Susan M.; Bearer, Cynthia; Lichenstein, Richard; Bisordi, Katharine; Koka, Rima; Greene, Carol; Schriml, Lynn M.
DO-KB - Disease Ontology Knowledgebase
database summary
DO-KB - Disease Ontology Knowledgebase
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DiseaseEnhancer Li, Xia; Zhang, Guanxiong; Shi, Jian; Zhu, Shiwei; Lan, Yujia; Xu, Liwen; Yuan, Huating; Liao, Gaoming; Liu, Xiaoqin; Zhang, Yunpeng; Xiao, Yun
No description supplied
database summary
No description supplied
database summary
DisGeNET Piñero, Janet; Bravo, Àlex; Queralt-Rosinach, Núria; Gutiérrez-Sacristán, Alba; Deu-Pons, Jordi; Centeno, Emilio; GarcÃÂa-GarcÃÂa, Javier; Sanz, Ferran; Furlong, Laura I.
DisGeNET is a knowledge platform that contains one of the largest available
database summary
DisGeNET is a knowledge platform that contains one of the largest available
database summary
DiSignAtlas Pan, Jianbo; Zhai, Zhaoyu; Lin, Zhewei; Meng, Xuehang; Zheng, Xiao; Du, Yujia; Li, Zhi; Zhang, Xuelu; Liu, Chang; Zhou, Lu; Zhang, Xu; Tian, Zhihao; Ma, Qinfeng; Li, Jinhao; Li, Qiang
DiSignAtlas: an atlas of human and mouse disease signatures based on bulk and single-cell transcriptomics
database summary
DiSignAtlas: an atlas of human and mouse disease signatures based on bulk and single-cell transcriptomics
database summary
DISNOR Cesareni, Gianni; Lo Surdo, Prisca; Calderone, Alberto; Iannuccelli, Marta; Licata, Luana; Peluso, Daniele; Castagnoli, Luisa; Perfetto, Livia
No description supplied
database summary
No description supplied
database summary
DisProt Piovesan, Damiano; Quaglia, Federica; Mészáros, Bálint; Salladini, Edoardo; Hatos, András; Pancsa, Rita; Chemes, Lucia B; Pajkos, Mátyás; Lazar, Tamas; Peña-DÃaz, Samuel; Santos, Jaime; Ã\x81cs, Veronika; Farahi, Nazanin; Ficho, Erzsebet; Aspromonte, Maria Cr
DisProt in 2022: improved quality and accessibility of protein intrinsic di
database summary
DisProt in 2022: improved quality and accessibility of protein intrinsic di
database summary
DisProt Piovesan, Damiano; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Quaglia, Federica; Bouhraoua, Adel; Tosatto, Silvio
DisProt in 2024: improving function annotation of intrinsically disordered proteins
database summary
DisProt in 2024: improving function annotation of intrinsically disordered proteins
database summary
DisProt - Database of Protein Disorder
Information about proteins that lack fixed 3D structure in their native states
database summary
Information about proteins that lack fixed 3D structure in their native states
database summary
DisProt: intrinsic protein disorder annotation in 2020 Hatos, András;Hajdu-Soltész, Borbála;Monzon, Alexander M;Palopoli, Nicolas;Ã\x81lvarez, LucÃÂa;Aykac-Fas, Burcu;Bassot, Claudio;BenÃÂtez, Guillermo I;Bevilacqua, Martina;Chasapi, Anastasia;Chemes, Lucia;Davey, Norman E;Davidović, Radoslav;Dunker, A Keith;Elofsson, Arne;Gobeill, Julien;Foutel, Nicolás S González;Sudha, Govindarajan;Guharoy, Mainak;Horvath, Tamas;Iglesias, Valentin;Kajava, Andrey V;Kovacs, Orsolya P;Lamb, John;Lambrughi, Matteo;Lazar, Tamas;Leclercq, Jeremy Y;Leonardi, Emanuela;Macedo-Ribeiro, Sandra;Macossay-Castillo, Mauricio;Maiani, Emiliano;Manso, José A;Marino-Buslje, Cristina;MartÃÂnez-Pérez, Elizabeth;Mészáros, Bálint;MiÄ\x8Detić, Ivan;Minervini, Giovanni;Murvai, Nikoletta;Necci, Marco;Ouzounis, Christos A;Pajkos, Mátyás;Paladin, Lisanna;Pancsa, Rita;Papaleo, Elena;Parisi, Gustavo;Pasche, Emilie;Barbosa Pereira, Pedro J;Promponas, Vasilis J;Pujols, Jordi;Quaglia, Federica;Ruch, Patrick;Salvatore, Marco;Schad, Eva;Szabo, Beata;Szaniszló, Tamás;Tamana, Stella;Tantos, Agnes;Veljkovic, Nevena;Ventura, Salvador;Vranken, Wim;Dosztányi, Zsuzsanna;Tompa, Peter;Tosatto, Silvio C E;Piovesan, Damiano
No description supplied
database summary
No description supplied
database summary
DIVAS Wei-Yi Cheng, Jörg Hakenberg, Shuyu Dan Li and Rong Chen
(Disease Variant Store)
database summary
(Disease Variant Store)
database summary
DKK Gomez, Shawn; Berginski, Matthew; Moret, Nienke; Liu, Changchang; Goldfarb, Dennis; Sorger, Peter
Dark Kinome Knowledgebase
database summary
Dark Kinome Knowledgebase
database summary
DMDD Wilson, Robert; McGuire, Christina; Mohun, Timothy, the DMDD project
Deciphering the Mechanisms of Developmental Disorder
database summary
Deciphering the Mechanisms of Developmental Disorder
database summary
DNAmoreDB Ponce Salvatierra, Almudena; Boccaletto, Pietro; Bujnicki, Janusz M.
DNAzymes i.e. DNA molecules with catalytic activity
database summary
DNAzymes i.e. DNA molecules with catalytic activity
database summary
DNAproDB: an expanded database and web-based tool for structural analysis of DNA–protein complexes Sagendorf, Jared M;Markarian, Nicholas;Berman, Helen M;Rohs, Remo
No description supplied
database summary
No description supplied
database summary
DNASU Plasmid Repository Catherine Y. Seiler1, Jin Park1, Amit Sharma1, Preston Hunter1, Padmini Surapaneni1, Casey Sedillo1, James Field2, Rhys Algar2, Andrea Price1, Jason Steel1, Andrea Throop1, Michael Fiacco1, and Joshua LaBaer1
DNASU Plasmid Repository, Protein Structure Initiative Material Repository (PSI-MR)
database summary
DNASU Plasmid Repository, Protein Structure Initiative Material Repository (PSI-MR)
database summary
dNTPpoolDB Tóth, Judit; Szabo, Judit; Ficho, Erzsebet; Molnar, Daniel; Suranyi, Eva; Trombitás, Tamás; Fuzesi, Dora; Loczi, Hanna; Szijjarto, Peter; Hirmondó, Rita; Pancsa, Rita
dNTP concentrations in vivo
database summary
dNTP concentrations in vivo
database summary
DoBISCUIT Natsuko Ichikawa
Database Of BIoSynthesis clusters CUrated and InTegrated
database summary
Database Of BIoSynthesis clusters CUrated and InTegrated
database summary
DoGSD Wang, Guo-Dong; Bai, Bing; Zhao, Wen-Ming; Tang, Bi-Xia; Wang, Yan-Qing; Wang, Lu; Zhang, Zhang; Yang, He-Chuan; Irwin, David; Zhang, Ya-Ping; Liu, Yan-Hu; Zhu, Jun-Wei
Dog and wolf whole genome variation browser
database summary
Dog and wolf whole genome variation browser
database summary
DomIns - Database of Domain Insertions Aroul-Selvam R.1 and Sasidharan R.2
Domain insertions in known protein structures
database summary
Domain insertions in known protein structures
database summary
DoOP - Databases of Orthologous Promoters Barta E.1, SebestyÉn E.1, PÁlfy T.B.1, TÓth G.1, Ortutay C.P.1 and Patthy L.2
Clusters of orthologous upstream sequences from chordates and plants
database summary
Clusters of orthologous upstream sequences from chordates and plants
database summary
DoriC Dong, Mei-Jing; Luo, Hao.; Gao, Feng
DoriC 12.0, an updated database of replication origins in both complete and
database summary
DoriC 12.0, an updated database of replication origins in both complete and
database summary
DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmids Luo, Hao;Gao, Feng
No description supplied
database summary
No description supplied
database summary
doRiNA Blin, Kai; Dieterich, Christoph; Wurmus, Ricardo; Rajewsky, Nikolaus; Landthaler, Markus; Akalin, Altuna
Database of RNA interactions in post-transcriptional regulation
database summary
Database of RNA interactions in post-transcriptional regulation
database summary
DPRP Cheng, Chao; Tseng, Yu-Ting; Tzeng, David; Ung, Matthew; Liu, Chun-Chi
A database of phenotype-specific regulatory programs derived from transcription factor binding data
database summary
A database of phenotype-specific regulatory programs derived from transcription factor binding data
database summary
Dr.VIS Yang, Xiaobo; Li, Ming -; Liu, Qi ,; Zhang, Yabing; Qiang, Junyan; Wan, Xueshuai; Wang, Anqiang; Zhang, Haohai; Zhu, Chengpei; Lu, X in; Mao, Yilei; Sang, Xinting; Zhao, Haitao; Zhao, Yi; zhang, xiaoyan
Chromosomal integration sites of viruses in the human tumor
database summary
Chromosomal integration sites of viruses in the human tumor
database summary
DreamBASE Qu, Liang-Hu; Zheng, Ling-Ling; Zhou, Ke-Ren; Liu, Shun; Zhang, Ding-Yao; Wang, Ze-lin; Chen, Zhi-Rong; Yang, Jian-Hua
dreamBase (DNA Modification, RNA Regulation and Protein Binding on Expresse
database summary
dreamBase (DNA Modification, RNA Regulation and Protein Binding on Expresse
database summary
DRESIS Zhu, Feng; Sun, Xiuna; ZHANG, Yintao; Li, Hanyang; ZHOU, Ying; Shi, Shuiyang; Chen, Zhen; He, Xin; Zhang, Hanyu; Li, Fengcheng; Yin, Jiayi; Wang, Yunzhu; Qiu, Yunqing
Drug resistance
database summary
Drug resistance
database summary
DriverDB Cheng, Wei-Chung; Liu, Chia-Hsin; Lai, Yo-Liang; Shen, Pei-Chun; Liu, Hsiu-Cheng; Tsai, Meng-Hsin; Yu-De, Wang; Lin, Wen-Jen; Chen, Fang-Hsin; Li, Chia-Yang; Wang, Shu-Chi
DriverDBv4: A Multi-Omics Integration Database for Cancer Driver Gene Research
database summary
DriverDBv4: A Multi-Omics Integration Database for Cancer Driver Gene Research
database summary
DriverDBv2 I-Fang Chung, Chen-Yang Chen, Shih-Chieh Su, Chia-Yang Li, Kou-Juey Wu, Hsei-Wei Wang and Wei-Chung Cheng
DriverDB, a database that incorporates >9500 cancer-related RNA-seq dataset
database summary
DriverDB, a database that incorporates >9500 cancer-related RNA-seq dataset
database summary
DrLLPS: a data resource of liquid–liquid phase separation in eukaryotes Ning, Wanshan;Guo, Yaping;Lin, Shaofeng;Mei, Bin;Wu, Yu;Jiang, Peiran;Tan, Xiaodan;Zhang, Weizhi;Chen, Guowei;Peng, Di;Chu, Liang;Xue, Yu
No description supplied
database summary
No description supplied
database summary
DRMref Song, Qianqian; Liu, Xiaona; Yi, Jiahao; Li, Tina; Wen, Jianguo; Kim, Pora; Zhou, Xiaobo1
DRMref: comprehensive reference map of drug resistance mechanisms
database summary
DRMref: comprehensive reference map of drug resistance mechanisms
database summary
DroID - Drosophila Interactions Database Yu J, Pacifico S., Guest G., Parrish J.R., and Finley R.L., Jr.
Drosophila gene and protein interaction data
database summary
Drosophila gene and protein interaction data
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Drosophila polymorphism database Casillas S., Petit N. and Barbadilla A.
Drosophila polymorphism database
database summary
Drosophila polymorphism database
database summary
DRTF Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J.
Database of rice transcription factors
database summary
Database of rice transcription factors
database summary
Drug2Gene Helge G Roider1, Nadia Pavlova2, Ivaylo Kirov2, Stoyan Slavov2, Todor Slavov2, Zlatyo Uzunov2 and Bertram Weiss1
Drug2Gene is a free multi-species drug-target knowledge base
database summary
Drug2Gene is a free multi-species drug-target knowledge base
database summary
DrugBank Wishart, David; Law, Vivian; Knox, Craig; Djoumbou, Yannick; Guo, An Chi; Jewison, Tim; Liu, Yifeng; Maciejewski, Adam; Arndt, David; Neveu, Vanessa; Tang, Alexandra; Gabriel, Geraldine; Ly, Carol; Adamjee, Sakina; Dame, Zerihune; Han, Beomsoo; Wilson, Michael.; Zhu, You
Combined information on drugs and drug targets
database summary
Combined information on drugs and drug targets
database summary
DrugBank Wishart, David; Knox, Craig; Wilson, Michael; Klinger, Christen; Franklin, Mark; Oler, Eponine; Wilson, Alex; Pon, Allison; Cox, Jordan; Chin, Na; Strawbridge, Seth; Garcia-Patino, Marysol; Kruger, Ray; Sivakumaran, Aadhavya; Sanford, Selena; Doshi, Rahil; Khetarpal, Nitya; Fatokun, Omolola; Doucet, Daphnée; Zubkowski, Ashley; Jackson, Hayley; Harford, Karxena; Anjum, Afia; Zakir, Mahi; Wang, Fei; Tian, Siyang; Lee, Brian; Peters, Harrison; Wang, Ruo; Nguyen, Tue; So, Denise; Sharp, Matthew; da Silva, Rodolfo; Gabriel, Cyrella; Scantlebury, Joshua; Jasinski, Marissa; Ackerman, David; Jewison, Tim; Sajed, Tanvir; Gautam, Vasuk
No description supplied
database summary
No description supplied
database summary
DrugCentral Oprea, Tudor; Avram, Sorin; Bologa, Cristian; Holmes, Jayme; Bocci, Giovanni; Wilson, Thomas; Nguyen, Dac-Trung; Curpan, Ramona; Halip, Lili; Bora, Alina; Yang, Jeremy; Knockel, Jeffrey; Sirimulla, Suman; Ursu, Oleg
Active ingredients of approved pharmaceutical products, indications. and mode of action
database summary
Active ingredients of approved pharmaceutical products, indications. and mode of action
database summary
DrugCentral Oprea, Tudor; Avram, Sorin; Wilson, Thomas; Curpan, Ramona; Halip, Lili; Borota, Ana; Bora, Alina; Bologa, Cristian; Holmes, Jayme; Knockel, Jeffrey; Yang, Jeremy
DrugCentral 2023 extends human clinical data and integrates veterinary drug
database summary
DrugCentral 2023 extends human clinical data and integrates veterinary drug
database summary
DrugMAP Chen, Yu Zong; Li, Fengcheng; Yin, Jiayi; Lu, Mingkun; Mou, Minjie; Li, Zhaorong; Tan, Ying; Wang, Shanshan; Chu, Xinyi; Dai, Haibin; Zeng, Su; Zhu, Feng
Molecular Atlas and Pharma-information of drugs
database summary
Molecular Atlas and Pharma-information of drugs
database summary
DrugSpaceX Zheng, Mingyue; Yang, Tianbiao; Li, Zhaojun; Chen, Yingjia; Feng, Dan; Wang, Guangchao; Fu, Zunyun; Ding, Xiaoyu; Tan, Xiaoqin; Zhao, Jihui; Luo, Xiaomin; Chen, Kaixian; Jiang, Hualiang
100 million compounds for virtual screening
database summary
100 million compounds for virtual screening
database summary
DRYGin Judice L. Y. Koh, Huiming Ding, Michael Costanzo, Anastasia Baryshnikova, Kiana Toufighi, Gary D. Bader, Chad L. Myers, Brenda J. Andrews, and Charles Boone
Data Repository for Yeast Genetic Interaction Networks
database summary
Data Repository for Yeast Genetic Interaction Networks
database summary
DSD Toseland C.P., McSparron H., Doytchinova I.A., and Flower D.R.
Database of dehydrogenase enzyme stereospecificities
database summary
Database of dehydrogenase enzyme stereospecificities
database summary
DSDBASE Vinayagam, A., Pugalenthi G., Rajesh R., Sowdhamini, R.
Database on disulfide bonds in proteins
database summary
Database on disulfide bonds in proteins
database summary
DSMM - a Database of Simulated Molecular Motions Finocchiaro, G.2, Wang, T.1, Hoffmann, R.1, Gonzalez, A.1, Wade, R.C.1
Database of Simulated Molecular Motions
database summary
Database of Simulated Molecular Motions
database summary
DualSeqDB Torrent, Marc; Macho Rendón, Javier; Lang, Benjamin; Ramos Llorens, Marc; Tartaglia, Gian Gaetano
Dual RNA-seq host-pathogen sequencing
database summary
Dual RNA-seq host-pathogen sequencing
database summary
DupScan Lu, Jianguo; Sun, Jialiang; Liu, Jian; Huang, Peilin
Vertebrate genome duplications
database summary
Vertebrate genome duplications
database summary
Dynamic Proteomics Frenkel-Morgenstern, M.1, Cohen, A.A.1 Geva-Zatorsky, N.1 Eden, E.1 Prilusky, J.2, Issaeva, I.1, Sigal, A.3, Cohen-Saidon, C.1 Liron, Y.1 Cohen, L.1 Danon, T.1 Perzov, N.1, and Alon, U.1
Dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells
database summary
Dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells
database summary
EBI Enzyme Portal Christoph Steinbeck
Various kinds of information about enzymes: small-molecule chemistry, biochemical pathways and drug compounds
database summary
Various kinds of information about enzymes: small-molecule chemistry, biochemical pathways and drug compounds
database summary
EBI Genomes
EBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes
database summary
EBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes
database summary
EBI Metagenomics Mitchell, Alex; Scheremetjew, Maxim; Denise, Hubert; Potter, Simon; Tarkowska, Aleksandra; Qureshi, Matloob; Salazar, Gustavo; Pesseat, Sebastien; Boland, Miguel; Hunter, Fiona; Ten Hoopen, Petra; Alako, Blaise; Amid, Clara; Wilkinson, Darren; Curtis, Thomas; Cochrane, Guy; Finn, Robert
EBI metagenomics (http://www.ebi.ac.uk/metagenomics) provides a free to use
database summary
EBI metagenomics (http://www.ebi.ac.uk/metagenomics) provides a free to use
database summary
EBI Metagenomics Mitchell, Alex; Bucchini, Francois; Cochrane, Guy; Denise, Hubert; Ten Hoopen, Petra; Fraser, Matthew; Pesseat, Sebastien; Potter, Simon; Scheremetjew, Maxim; Sterk, Peter; Finn, Robert
An automated pipeline for the analysis and archiving of metagenomic data
database summary
An automated pipeline for the analysis and archiving of metagenomic data
database summary
EBI patent sequences Weizhong Li, Hamish McWilliam, Ana Richart de la Torre, Adam Grodowski, Irina Benediktovich, Mickael Goujon, Stephane Nauche, and Rodrigo Lopez
Non-redundant databases of patent DNA and protein sequences
database summary
Non-redundant databases of patent DNA and protein sequences
database summary
EBI resources Cantelli, Gaia; Cochrane, Guy; Brooksbank, Catherine; McDonagh, Ellen; Flicek, Paul; McEntyre, Johanna; Birney, Ewan; Apweiler, Rolf
Database resources of the European Bioinformatics Institute
database summary
Database resources of the European Bioinformatics Institute
database summary
eBLOCKS Su Q., Lu L., Saxonov S. and Brutlag D.L.
Highly conserved protein sequence blocks
database summary
Highly conserved protein sequence blocks
database summary
Echinobase Hinman, Veronica; Arshinoff, Bradley; Cary, Gregory; Karimi, Kamran; Foley, Saoirse; Agalakov, Sergei; Delgado, Francisco; Lotay, Vaneet; Ku, Carolyn; Pells, Troy; Beatman, Thomas; Kim, Eugene; Cameron, R. Andrew; Vize, Peter; Telmer, Cheryl; Croce, Jenif
Echinoderm genomics
database summary
Echinoderm genomics
database summary
ECO Giglio, Michelle; Nadendla, Suvarna; Tauber, Rebecca; Munro, James; Quaglia, Federica; Mészáros, Bálint; Olley, Dustin; Hobbs, Elizabeth; Goralski, Stephen; Chibucos, Marcus; Mungall, Chris; Tosatto, Silvio; Erill, Ivan
Evidence and Conclusion Ontology
database summary
Evidence and Conclusion Ontology
database summary
ECOD Schaeffer, Richard (proxy) (contact); Liao, Yuxing; Cheng, Hua; Grishin, Nick
Evolutionary Classification of Protein Domains
database summary
Evolutionary Classification of Protein Domains
database summary
ECOdrug Verbruggen, Bas; Gunnarsson, Lina; Kristiansson, Erik,; Österlund, Tobias; Owen, Stewart; Snape, Jason; Tyler, Charles
No description supplied
database summary
No description supplied
database summary
ECRbase Loots G.G. and Ovcharenko I.
Evolutionary conserved regions, promoters, and transcription factor binding sites
database summary
Evolutionary conserved regions, promoters, and transcription factor binding sites
database summary
EDAS - EST-Derived Alternative Splicing Database Nurtdinov, R.N., Neverov, A.D., Mironov, A.A., and Gelfand, M.S.
Alternative splicing deduced from EST data
database summary
Alternative splicing deduced from EST data
database summary
Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human Niu, Guangyi;Zou, Dong;Li, Mengwei;Zhang, Yuansheng;Sang, Jian;Xia, Lin;Li, Man;Liu, Lin;Cao, Jiabao;Zhang, Yang;Wang, Pei;Hu, Songnian;Hao, Lili;Zhang, Zhang
No description supplied
database summary
No description supplied
database summary
EDomics Jiankai Wei, Penghui Liu, Fuyun Liu, An Jiang, Jinghan Qiao, Zhongqi Pu, Bingrou Wang, Jin Zhang, Dongning Jia, Yuli Li, Shi Wang and Bo Dong
Comparative multi-omics for animal Evo-Devo
database summary
Comparative multi-omics for animal Evo-Devo
database summary
EDULISS (currently unavailable) Kun-Yi Hsin 1, Hugh P. Morgan 1, Steven R. Shave 1, Andrew C. Hinton 1, Paul Taylor 1 and Malcolm D. Walkinshaw 1
EDinburgh University Ligand Selection System
database summary
EDinburgh University Ligand Selection System
database summary
EENdb Bo Zhang
Engineered endonucleases: zinc finger nucleases and transcription activator-like effector nucleases
database summary
Engineered endonucleases: zinc finger nucleases and transcription activator-like effector nucleases
database summary
eF-site - Electrostatic surface of Functional site
Electrostatic potentials and hydrophobic properties of the active sites
database summary
Electrostatic potentials and hydrophobic properties of the active sites
database summary
Effective Marc-André Jehl, Roland Arnold, and Thomas Rattei
Predicted secreted bacterial proteins
database summary
Predicted secreted bacterial proteins
database summary
EGA Rambla, Jordi; Freeberg, Mallory; Fromont, Lauren; D'Altri, Teresa; Foix, Anna; Izquierdo Ciges, Jorge; Jene, Aina; Kerry, Giselle; Moldes, Mauricio; Ariosa, Roberto; Bahena, Silvia; Barrowdale, Daniel; Casado, Marcos; Fernandez-Orth, Dietmar; Garcia-Lina
European Genome-Phenome Archive
database summary
European Genome-Phenome Archive
database summary
eggNOG Powell, Sean; Forslund, Kristoffer; Szklarczyk, Damian; Trachana, Kalliopi; Roth, Alexander; Huerta-Cepas, Jaime; Gabaldon, Toni; Rattei, Thomas; Creevey, Chris; Kuhn, Michael; Jensen, Lars,; von Mering, Christian; Bork, Peer
Evolutionary genealogy of genes: Non-supervised Orthologous Groups
database summary
Evolutionary genealogy of genes: Non-supervised Orthologous Groups
database summary
eggNOG Hernández-Plaza, Ana; Szklarczyk, Damian; Botas, Jorge; Cantalapiedra, Carlos P.; Giner Lamia, joaquin; Mende, Daniel R; Kirsch, Rebecca; Rattei, Thomas; Letunic, Ivica,; Jensen, Lars,; Bork, Peer; von Mering, Christian; Huerta Cepas, Jaime
eggNOG 6.0: Enabling comparative genomics across 12,535 organisms
database summary
eggNOG 6.0: Enabling comparative genomics across 12,535 organisms
database summary
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses Huerta-Cepas, Jaime;Szklarczyk, Damian;Heller, Davide;Hernández-Plaza, Ana;Forslund, Sofia K;Cook, Helen;Mende, Daniel R;Letunic, Ivica;Rattei, Thomas;Jensen, Lars J;von Mering, Christian;Bork, Peer
No description supplied
database summary
No description supplied
database summary
EHFPI Bo, Xiaochen; Liu, Yang; Xie, Dafei; Bai, Hui; Han, Lu; Li, Fei; Wang, Shengqi
Essential Host Factors for Pathogenic Infection
database summary
Essential Host Factors for Pathogenic Infection
database summary
EK3D Rathinavelan, Thenmalarchelvi; Reddy, Kunduru; Nair, Sanjana
Capsular polysaccharide (K antigen) structures of various serotypes of E. coli
database summary
Capsular polysaccharide (K antigen) structures of various serotypes of E. coli
database summary
EKPD Xue, Yu; Wang, Yongbo; Liu, Zexian; Cheng, Han; Pan, Zhicheng; Yang, Qing; Guo, Anyuan
Eukaryotic Kinase and Phosphatase Database
database summary
Eukaryotic Kinase and Phosphatase Database
database summary
ELM Kumar, Manjeet; Michael, Sushama; Alvarado Valverde, Jesus; Mészáros, Bálint; Sámano-Sánchez, Hugo; Zeke, András; Dobson, László; Lazar, Tamas; Örd, Mihkel; Nagpal, Anurag; Farahi, Nazanin; Käser, Melanie; Kraleti, Ramya; Davey, Norman; Pancsa, Rita; Chem
The Eukaryotic Linear Motif resource - 2022 release
database summary
The Eukaryotic Linear Motif resource - 2022 release
database summary
ELM Kumar, Manjeet; Michael, Sushama; Alvarado Valverde, Jesus; Zeke, András; Lazar, Tamas; Dobson-Kalman, Zsofia; Nagpal, Anurag; Mac Donagh, Juan; Griffin, Juan; Van Roey, Kim; Glavina, Juliana; Palopoli, Nicolás; Bhardwaj, Rajesh; Pascarelli, Stefano; Dobson, László; Nagy-Kanta, Eszter; Diella, Francesca.; Suarez, Carmen Florencia; Dean, Kellie; Davey, Norman; Pancsa, Rita; Chemes, Lucia; Gibson, Toby J
ELM - The Eukaryotic Linear Motif resource - 2024 update
database summary
ELM - The Eukaryotic Linear Motif resource - 2024 update
database summary
ELM Gouw, Marc; Michael, Sushama; Sámano-Sánchez, Hugo; Kumar, Manjeet; Zeke, András; Lang, Benjamin; Bely, Benoit; Chemes, Lucia; Davey, Norman; Deng, Ziqi; Diella, Francesca.; Guerth, Clara-Marie; Huber, Ann-Kathrin; Kleinsorg, Stefan; Schlegel, Lara; Palopoli, Nicolas; Van Roey, Kim; Reményi, Attila; Dinkel, Holger; Gibson, Toby
The eukaryotic linear motif resource
database summary
The eukaryotic linear motif resource
database summary
ELM - Eukaryotic Linear Motif: functional sites in eukaryotic proteins Dinkel, Holger; Van Roey, Kim; Michael, Sushama; Davey, Norman E; Weatheritt, Robert; Born, Diana; Speck,
Eukaryotic linear motif: functional sites in eukaryotic proteins
database summary
Eukaryotic linear motif: functional sites in eukaryotic proteins
database summary
ELMâ€â€\x9Dthe eukaryotic linear motif resource in 2020 Kumar, Manjeet;Gouw, Marc;Michael, Sushama;Sámano-Sánchez, Hugo;Pancsa, Rita;Glavina, Juliana;Diakogianni, Athina;Valverde, Jesús Alvarado;Bukirova, Dayana;ÄŒalyÅ¡eva, Jelena;Palopoli, Nicolas;Davey, Norman E;Chemes, LucÃÂa B;Gibson, Toby J
No description supplied
database summary
No description supplied
database summary
EMAGE Richardson L, Venkataraman S, Stevenson P, Yang Y, Moss J, Graham L, Burton N, Hill B, Rao J, Baldock RA, Armit C.
Edinburgh Mouse Atlas gene expression database
database summary
Edinburgh Mouse Atlas gene expression database
database summary
EmAtlas Zuo, Yongchun; Zheng, Lei; Liang, Pengfei; Long, Chunshen; Li, Haicheng; Li, Hanshuang; Liang, Yuchao; He, Xiang; Xi, Qilemuge; Xing, Yongqiang
Spatiotemporal multi-omics of mammalian embryogenesis
database summary
Spatiotemporal multi-omics of mammalian embryogenesis
database summary
EMDataBank Catherine L. Lawson 1, Matthew L. Baker 2, Christoph Best 3, Chunxiao Bi 1, Matthew Dougherty 2, Powei Feng 4, Glen van Ginkel 3, Batsal Devkota 1, Ingvar Lagerstedt 3, Steven J. Ludtke 2, Richard H. Newman 3, Tom J. Oldfield 3, Ian Rees 2, Gaurav Sahni 3, Raul Sala 1, Sameer Velankar 3, Joe Warren 4, John D. Westbrook 1, Kim Henrick 3, Gerard J. Kleywegt 3, Helen M. Berman 1 and Wah Chiu 2
3D cryo-electron microscopy maps, models and metadata
database summary
3D cryo-electron microscopy maps, models and metadata
database summary
EMDB Turner, Jack; Abbott, Sanja; Fonseca, Neli; Carrijo, Lucas; Duraisamy, Amudha Kumari; Salih, Osman; Wang, Zhe; Kleywegt, Gerard; Morris, Kyle; Patwardhan, Ardan; Burley, Stephen; Crichlow, Gregg; Feng, Zukang; Flatt, Justin W.; Ghosh, Sutapa; Hudson, Brian; Lawsone, Catherine; Liang, Yu He; Peisach, Ezra; Persikova, Irina; Sekharan, Monica; Shao, Chenghua; Young, Jasmine Y; Velankar, Sameer; Armstrong, David; Bage, Marcus; Bueno, Weslley; Evans, Genevieve; Gáborová, Romana; Ganguly, Sudakshina; Gupta, Deepti; Harrus, Deborah; Tanweer, Ahsan; Kurisu, Genji; Cho, Hasumi; Ikegawa, Yasuyo; Kengaku, Yumiko; Kim, Ju Yaen; Niwa, Satomi; Sato, Junko; Takuwa, Ayako; Yu, Jian; Hoch, Jeffrey; Xu, Wenqing; Zhang, Weizhe; Ma, Xiaodan; Bansal, Manju; Rangannan, Vetriselvi
EMDB - the Electron Microscopy Data Bank
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EMDB - the Electron Microscopy Data Bank
database summary
EMPIAR Patwardhan, Ardan; Iudin, Andrii; Korir, Paul; Somasundharam, Sriram; Weyand, Simone; Cattavitello, Cesare; Fonseca, Neli; Salih, Osman; Kleywegt, Gerard
The Electron Microscopy Public Image Archive
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The Electron Microscopy Public Image Archive
database summary
ENCODE Cherry, J. Michael; Davis, Carrie; Hitz, Benjamin; Sloan, Cricket; Chan, Esther; Davidson, Jean; Gabdank, Idan; Hilton, Jason; Jain, Kriti; Baymuradov, Ulugbek; Narayanan, Aditi; Onate, Kathrina; Graham, Keenan; Miyasato, Stuart; Dreszer, Timothy; Strattan, J Seth; Jolanki, Otto; Tanaka, Forrest
The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center has deve
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The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center has deve
database summary
ENCODE DCC Cherry, J. Michael; Sloan, Cricket; Chan, Esther; Davidson, Jean; Malladi, Venkat; Strattan, J Seth; Hitz, Benjamin; Gabdank, Idan; Narayanan, Aditi; Ho, Marcus; Lee, Brian; Rowe, Laurence; Dreszer, Timothy; Roe, Greg R; Podduturi, Nikhil Reddy; Tanaka, Forrest; Hong, Eurie
No description supplied
database summary
No description supplied
database summary
ENCODE Project at UCSC Rosenbloom, Kate1; Dreszer, Timothy1; Malladi, Venkat1; Long, Jeffrey1; Sloan, Cricket1; Raney, Brian1; Cline, Melissa1; Karolchik, Donna1; Barber, Galt1; Clawson, Hiram1; Diekhans, Mark1; Fujita, Pauline1; Goldman, Mary1; Gravell, Robert1; Kuhn, Robert1; Harte, Rachel1; Hinrichs, Angie1; Kirkup, Vanessa1; Learned, Katrina1; Maddren, Morgan1; Meyer, Laurence1; Pohl, Andy1,2; Rhead, Brooke1; Wong, Mathew1; Zweig, Ann1; Haussler, David1,3; Kent, Jim1
Encyclopedia of DNA Elements, all functional elements in the human genome
database summary
Encyclopedia of DNA Elements, all functional elements in the human genome
database summary
EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins Sarti, Edoardo;Aleksandrova, Antoniya A;Ganta, Srujan K;Yavatkar, Amarendra S;Forrest, Lucy R
No description supplied
database summary
No description supplied
database summary
ENdb: a manually curated database of experimentally supported enhancers for human and mouse Bai, Xuefeng;Shi, Shanshan;Ai, Bo;Jiang, Yong;Liu, Yuejuan;Han, Xiaole;Xu, Mingcong;Pan, Qi;Wang, Fan;Wang, Qiuyu;Zhang, Jian;Li, Xuecang;Feng, Chenchen;Li, Yanyu;Wang, Yuezhu;Song, Yiwei;Feng, Ke;Li, Chunquan
Comprehensive manually curated enhancer database for human and mouse (ENdb,
database summary
Comprehensive manually curated enhancer database for human and mouse (ENdb,
database summary
EndoNet Potapov A.1, Liebich I.1,2, Dönitz J.1, Schwarzer K.1, Sasse N.1, Schoeps T.1, Crass T.1 and Wingender E.1,2
Information about the components of endocrine networks
database summary
Information about the components of endocrine networks
database summary
EndoQuad Qian, Sheng Hu; Shi, Meng-Wei; Xiong, Yu-Li; Zhang, Yuan; Zhang, Ze-Hao; Song, Xue-Mei; Deng, Xin-Yin; Chen, Zhen-Xia
EndoQuad: a comprehensive genome-wide experimentally validated endogenous G-quadruplex database
database summary
EndoQuad: a comprehensive genome-wide experimentally validated endogenous G-quadruplex database
database summary
EnhancerAtlas 2.0 Gao, Tianshun;Qian, Jiang
Enhancers are a class of cis-regulatory elements that can increase gene tra
database summary
Enhancers are a class of cis-regulatory elements that can increase gene tra
database summary
ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins Tak Leung, Ricky Wai;Jiang, Xiaosen;Chu, Ka Hou;Qin, Jing
No description supplied
database summary
No description supplied
database summary
Ensembl Harrison, Peter; Amode, M; Austine-Orimoloye, Olanrewaju; Azov, Andrey; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew.; Bhai, Jyothish; Kaur Bhurji, Simarpreet; Boddu, Sanjay; Branco Lins, Paulo; Brooks, Lucy; Budhanuru Ramaraju, Shashank; Campbell, Lahcen; Carbajo MartÃnez, Manuel; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; GarcÃa Girón, Carlos; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet; Gonzalez, Jose; Gurbich, Tatiana; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaikala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela; Paola Mirabueno, Louisse; Mushtaq, Aleena; Hossain, Syed; Ogeh, Denye; Sakthivel, Manoj; Parker, Anne; Perry, Malcolm; Piližota, Ivana; Poppleton, Daniel; Sycheva, Irina; Raj, Shriya; Pérez-Silva, José; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Daniel; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyösti; Tricomi, Francesca; Urbina-Gómez, David; Veidenberg, Andres; Walsh, Thomas; Ware, Doreenunreliable; Wass, Elizabeth; Willhoft, Natalie; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; IIsley, Garth; Keatley, Jon; Loveland, Jane; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John,; Trevanion, Stephen J; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah; Cunningham, Fiona; Dyer, Sarah; Finn, Robert; Martin, Fergal; Yates, Andrew
Ensembl (https://www.ensembl.org) has produced high-quality genomic resourc
database summary
Ensembl (https://www.ensembl.org) has produced high-quality genomic resourc
database summary
Ensembl COVID-19 resource Yates, Andrew; De Silva, Nishadi; Bhai, Jyothish; Chakiachvili, Marc; Contreras Moreira, Bruno; Cummins, Carla; Frankish, Adam; Gall, Astrid; Genez, Thiago; Howe, Kevin; Hunt, Sarah; Martin, Fergal; Moore, Benjamin; Ogeh, Denye; Parker, Anne; Parton, Andr
Integrated public SARS-CoV-2 data
database summary
Integrated public SARS-CoV-2 data
database summary
Ensembl Genomes Andrew D Yates, James Allen, Ridwan M Amode, Andrey G Azov, Matthieu Barba, Andrés Becerra, Jyothish Bhai, Lahcen I Campbell, Manuel Carbajo Martinez, Marc Chakiachvili, Kapeel Chougule, Mikkel Christensen, Bruno Contreras-Moreira, Alayne Cuzick, Luca Da Rin Fioretto, Paul Davis, Nishadi H De Silva, Stavros Diamantakis, Sarah Dyer, Justin Elser, Carla V Filippi, Astrid Gall, Dionysios Grigoriadis, Cristina Guijarro-Clarke, Parul Gupta, Kim E Hammond-Kosack, Kevin L Howe, Pankaj Jaiswal, Vinay Kaikala, Vivek Kumar, Sunita Kumari, Nick Langridge, Tuan Le, Manuel Luypaert, Gareth L Maslen, Thomas Maurel, Benjamin Moore, Matthieu Muffato, Aleena Mushtaq, Guy Naamati, Sushma Naithani, Andrew Olson, Anne Parker, Michael Paulini, Helder Pedro, Emily Perry, Justin Preece, Mark Quinton-Tulloch, Faye Rodgers, Marc Rosello, Magali Ruffier, James Seager, Vasily Sitnik, Michal Szpak, John Tate, Marcela K Tello-Ruiz, Stephen J Trevanion, Martin Urban, Doreen Ware, Sharon Wei, Gary Williams, Andrea Winterbottom, Magdalena Zarowiecki, Robert D Finn, Paul Flicek
Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-ver
database summary
Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-ver
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Entrez Gene Murphy, Terence D.; Brown, Garth; Hem, Vichet; Katz, Kenneth; Ovetsky, Michael; Wallin, Craig; Ermolaeva, Olga; Tolstoy, Igor; Tatusova, Tatiana; Pruitt, Kim; Maglott, Donna
Gene-centered information at NCBI
database summary
Gene-centered information at NCBI
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Entrez Genomes
NCBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes
database summary
NCBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes
database summary
Enzyme Nomenclature Gerard P. Moss
IUBMB Nomenclature Committee recommendations and updates
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IUBMB Nomenclature Committee recommendations and updates
database summary
EPD Brenes, A, Afzal, V, Kent, R & Lamond A.I
The Encyclopedia of Proteome Dynamics (EPD)
database summary
The Encyclopedia of Proteome Dynamics (EPD)
database summary
EpiDenovo Mao, Fengbiao; Liu, Qi; Zhao, Xiaolu; Yang, Haonan; Guo, Sen; Xiao, Luoyuan; Li, Xianfeng; Teng, Huajing; Sun, Zhongsheng; Dou, Yali
No description supplied
database summary
No description supplied
database summary
EpiFactors Marakulina, Daria; Vorontsov, Ilya; Kulakovskiy, Ivan; Lennartsson, Andreas; Drabløs, Finn; Medvedeva, Yulia
Human epigenetic factors and complexes
database summary
Human epigenetic factors and complexes
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EpilepsyGene Sun, Zhongsheng (contact); Ran, Xia; Li, Jinchen; Shao, Qianzhi; Chen, Huiqian; Lin, Zhongdong; Wu, Jinyu
Genes and mutations related to epilepsy
database summary
Genes and mutations related to epilepsy
database summary
Epitome Schlessinger A.1,2,3, Ofran Y.1,2, Yachdav G.1,2,3 and Rost B.1,2,3
Database of structure-inferred antigenic epitopes
database summary
Database of structure-inferred antigenic epitopes
database summary
Equilibrator Noor, Elad; Beber, Moritz; Gollub, Mattia; Mozaffari, Dana; Shebek, Kevin; Flamholz, Avi; Milo, Ron
eQuilibrator 3.0 – a database solution for thermodynamic constant estimat
database summary
eQuilibrator 3.0 – a database solution for thermodynamic constant estimat
database summary
eRAM Ni, Xin; Jia, Jinmeng; An, Zhongxin; Ming, Yue; Guo, Yongli; Li, Wei; Liang, Yunxiang; Guo, Dongming; Li, Xin; Tai, Jun; Chen, Geng'; Jin, Yaqiong; Liu, Zhimei; Shi, Tieliu
Rare diseases affect over a hundred million people worldwide, most of these
database summary
Rare diseases affect over a hundred million people worldwide, most of these
database summary
eRNAbase Li, Chunquan; Song, Chao; Zhang, Guorui; Mu, Xinxin; Feng, Chenchen; Zhang, Qinyi; Song, Shuang; Zhang, Yuexin2; Yin, Mingxue; Zhang, Hang; Tang, Huifang
eRNAbase:A comprehensive database for decoding the regulatory eRNAs in human and mouse
database summary
eRNAbase:A comprehensive database for decoding the regulatory eRNAs in human and mouse
database summary
EROP-Moscow Zamyatnin A.A, Borchikov A.S., Vladimirov M.G. and Voronina O.L.
A database of Endogenous Regulatory OligoPeptides
database summary
A database of Endogenous Regulatory OligoPeptides
database summary
ESC Scaria, Vinod; Rophina, Mercy; Pandhare, Kavita; Shamnath, Afra; Imran, Mohamed; Jolly, Bani
SARS-CoV-2 immune escape variants
database summary
SARS-CoV-2 immune escape variants
database summary
eSLDB - eukaryotic Subcellular Localization database Pierleoni A., Martelli P.L., Fariselli P. and Casadio R.
Subcellular localization of entire eukaryotic proteomes
database summary
Subcellular localization of entire eukaryotic proteomes
database summary
euGenes Gilbert, D.
Common summaries of gene and genomic information for eukaryotic organisms
database summary
Common summaries of gene and genomic information for eukaryotic organisms
database summary
Eukaryotic Promoter Database, EPD Meylan, Patrick1;Dreos, René1;Ambrosini, Giovanna1,2;Groux, Romain 1,2;Bucher, Philipp1,2
The Eukaryotic Promoter Database (EPD) provides accurate transcription star
database summary
The Eukaryotic Promoter Database (EPD) provides accurate transcription star
database summary
EukProt 1Daniel Richter, 2,3Cédric Berney, 4Jürgen Strassert, 5Fabien Burki, 2,3Colomban de Vargas
EukProt is a database of published and publicly available predicted protein
database summary
EukProt is a database of published and publicly available predicted protein
database summary
euL1db Cristofari, Gael; Mir, Ashfaq; Philippe, Claude
L1 retrotransposon insertions in humans
database summary
L1 retrotransposon insertions in humans
database summary
EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs) Liao, Jian-You;Yang, Bing;Zhang, Yu-Chan;Wang, Xiao-Juan;Ye, Yushan;Peng, Jing-Wen;Yang, Zhi-Zhi;He, Jie-Hua;Zhang, Yin;Hu, KaiShun;Lin, De-Chen;Yin, Dong
No description supplied
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No description supplied
database summary
EURISCO Weise, Stephan; Oppermann, Markus; Maggioni, Lorenzo; van Hintum, Theo; Knüpffer, Helmut
European catalogue for plant genetic resources
database summary
European catalogue for plant genetic resources
database summary
EURISCO Weise, Stephan; Kotni, Pragna; van Hintum, Theo; Maggioni, Lorenzo; Oppermann, Markus
EURISCO update 2023: the European Search Catalogue for Plant Genetic Resour
database summary
EURISCO update 2023: the European Search Catalogue for Plant Genetic Resour
database summary
Europe PMC Harrison, Melissa; Rosonovski, Summer; Levchenko, Maria; Bhatnagar, Rajat; Chandrasekaran, Umamageswari; Faulk, Lynne; Hassan, Islam; Ide-Smith, Michele; Jeffryes, Matthew; Mubashar, Syed Irtaza; Nassar, Maaly; Palanisamy, Madhumiethaa Jayaprabha; Parkin, Michael; Poluru, Jagadeeswararao; Rogers, Frances; Saha, Shyamasree; Selim, Mohamed; Shafique, Zunaira; Stephenson, David; Tirunagari, Santosh; Venkatesan, Aravind; Xing, Lijun
Europe PMC (https://europepmc.org) is a comprehensive resource of biomedica
database summary
Europe PMC (https://europepmc.org) is a comprehensive resource of biomedica
database summary
Europe PubMed Central McEntyre, Johanna; KAFKAS, SENAY
European PubMed Central, archive of full-text papers
database summary
European PubMed Central, archive of full-text papers
database summary
European Genome-phenome Archive (EGA) Lappalainen I, Almeida-King J, Kumanduri V, Marin-Garcia P and Flicek P
The European Genome–phenome Archive (EGA) is a permanent repository for all types of potentially identifiable genetic and phenotypic data from biomedical research projects. The EGA contains data collected from individuals who have given consent for its use in research, but not for open public distribution.
database summary
The European Genome–phenome Archive (EGA) is a permanent repository for all types of potentially identifiable genetic and phenotypic data from biomedical research projects. The EGA contains data collected from individuals who have given consent for its use in research, but not for open public distribution.
database summary
European Nucleotide Archive Yuan, David; Zyoud, Ahmad; Ahamed, Alisha; Lathi, Ankur; Cummins, Carla; O'Cathail, Colman; Ouma, Dennis; Gupta, Dipayan; Rinck, Gabriele; McKinnon, Jasmine; Paupério, Joana; Burgin, Josephine; Gueye, Khadim; Meszaros, Lili; Ihsan, Maira; Kumar, Manish; V
The European Nucleotide Archive
database summary
The European Nucleotide Archive
database summary
EVA Keane, Thomas; Cezard, Timothe; Cunningham, Fiona; Hunt, Sarah; Koylass, Baron; Kumar, Nithin; Saunders, Gary; Shen, April; Silva, Andres; Tsukanov, Kirill; Venkataraman, Sundar; Flicek, Paul; Parkinson, Helen
European Variation Archive
database summary
European Variation Archive
database summary
EVAtlas Guo, Anyuan; Liu, Chun-Jie; Xie, Gui-Yan; Miao, Yaru; Xia, Mengxuan; Wang, Yi; Lei, Qian; Zhang, Qiong
was EVmiRNA
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was EVmiRNA
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EVEREST - EVolutionary Ensembles of REcurrent SegmenTs Portugaly E.1Linial N.1 and Linial M.2
Automatically generated protein domain families
database summary
Automatically generated protein domain families
database summary
EVlncRNAs Zhou, Yaoqi; Zhou, Bailing; Ji, Baohua; Shen, Congcong; Zhang, Xia; Yu, Xue; Huang, Pingping; Yu, Ru; Zhang, Hongmei; Dou, Xianghua; Chen, Qingshuai; Zeng, Qiangcheng; Wang, Xiaoxin; Cao, Zanxia; Hu, Guodong; Xu, Shicai; zhao, huiying; Yang, Yuedong.; Wan
EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments
database summary
EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments
database summary
EVLncRNAs Zhou, Yaoqi; Zhou, Bailing; Ji, Baohua; Liu, Kui; Hu, Guodong; Wang, Fei; Chen, Qingshuai; Yu, Ru; Huang, Pingping; Ren, Jing; Guo, Chengang; Zhao, Huiying2; Zhang, Hongmei; Zhao, Dongbo; Li, Zhiwei; Zeng, Qiangcheng; Yu, Jia-Feng; Bian, Yunqiang; Cao, Zanxia; Xu, Shicai; Yang, Yuedong.; Wang, Jihua
Long non-coding RNAs (lncRNAs) play important functional roles in various b
database summary
Long non-coding RNAs (lncRNAs) play important functional roles in various b
database summary
EVmiRNA: a database of miRNA profiling in extracellular vesicles Liu, Teng;Zhang, Qiong;Zhang, Jiankun;Li, Chao;Miao, Ya-Ru;Lei, Qian;Li, Qiubai;Guo, An-Yuan
No description supplied
database summary
No description supplied
database summary
EVOG Kim, D.-S.1, Cho, C.-Y.3, Huh, J-W.4, Kim, H.-S.2, Cho, H.-G.3
A database for evolutionary analysis of overlapping genes
database summary
A database for evolutionary analysis of overlapping genes
database summary
EWAS Open Platform Bao, Yi-Ming; xiong, zhuang; Yang, Fei`; Li, Mengwei; Ma, Yingke; Zhao, Wei; Guoliang, Wang; Li, Zhaohua; Zheng, Xinchang; Zou, Dong; Wenting, Zong; Hongen, Kang; Jia, Yaokai; Li, Rujiao; Zhang, Zhang
Analysis platform for EWAS research
database summary
Analysis platform for EWAS research
database summary
ExAC browser Karczewski, Konrad; Weisburd, Ben; Thomas, Brett; Ruderfer, Douglas; Kavanagh, David; Hamamsy, Tymor; Lek, Monkol; Samocha, Kaitlin; Cummings, Beryl; Birnbaum, Daniel; Consortium, Exome; Daly, Mark; MacArthur, Daniel
Exome sequence data from the Exome Aggregation Consortium
database summary
Exome sequence data from the Exome Aggregation Consortium
database summary
ExoCarta Suresh Mathivanan1, Cassie Patterson2, Gavin E. Reid2 and Richard J. Simpson1
Database on exosomes, membrane vesicles of endocytic origin released by diverse cell types
database summary
Database on exosomes, membrane vesicles of endocytic origin released by diverse cell types
database summary
ExoLocator Khoo, Aik Aun; Ogrizek-TomaÅ¡, Mario; Bulović, Ana; Korpar, Matija; Gürler, Ece; SlijepÄ\x8Dević, Ivan; Å ikić, Mile; Mihalek, Ivana
Protein-coding exons from completed verterbrate genomes
database summary
Protein-coding exons from completed verterbrate genomes
database summary
ExoRBase Huang, Shenglin; Li, Shengli.; Li, Yuchen; Chen, Bing; Zhao, Jingjing; Yu, Shulin; Tang, Yuan; Zheng, Qiupeng; Wang, Peng; He, Xianghuo
No description supplied
database summary
No description supplied
database summary
exoRBase Huang, Shenglin; Lai, Hongyan; Li, Yuchen; Hu, Jia; Liao, Jiatao; Su, Ying; Li, Qin; Chen, Bing..; Zhang, Hena; Li, Caiping; Wang, Zhen"; Li, Yan ..; Wang, Jialei; Meng, Zhiqiang; Huang, Zhaohui
exoRBase 2.0: an atlas of mRNA, lncRNA and circRNA in extracellular vesicle
database summary
exoRBase 2.0: an atlas of mRNA, lncRNA and circRNA in extracellular vesicle
database summary
Exposome-Explorer Scalbert, Augustin; Neveu, Vanessa; Moussy, Alice; Rouaix, Héloïse; Wedekind, Roland; Pon, Allison; Knox, Craig; Wishart, David
Biomarkers of exposure to disease risk factors
database summary
Biomarkers of exposure to disease risk factors
database summary
Expression Atlas Papatheodorou, Irene; George, Nancy; Madrigal, Pedro; Vathrakokoili Pournara, Anna; Prakash, Ananth; Muñoz-Pomer Fuentes, Alfonso; Nolte, Nadja Francesca; Thanki, Anil; Marugán, José; Bi, Yalan; Iqbal, Haider; Kumbham, Upendra; Zhao, Lingyun; Fexova, Silv
Expression Atlas update: Insights from sequencing data at both bulk and single cell level
database summary
Expression Atlas update: Insights from sequencing data at both bulk and single cell level
database summary
Expression Atlas Petryszak, Robert; Burdett, Tony; Fiorelli, Benedetto; Fonseca, Nuno; Gonzalez-Porta, Mar; Hastings, Emma; Huber, Wolfgang; Jupp, Simon; Keays, Maria; Kryvych, Nataliya; McMurry, Julie; Marioni, John; Malone, James; Megy, Karyn; Rustici, Gabriella; Tang, Amy; Taubert, Jan; Williams, Eleanor; Parkinson, Helen; Brazma, Alvis
Gene Expression Atlas
database summary
Gene Expression Atlas
database summary
Expression Atlas Papatheodorou, Irene; Moreno, Pablo; Fexova, Silvie; George, Nancy; Manning, Jonathan; Miao, Zhichao; Mohammed, Suhaib; Muñoz-Pomer Fuentes, Alfonso; Füllgrabe, Anja; Bi, Yalan; Bush, Natassja; Iqbal, Haider; Kumbham, Upendra; Solovyev, Andrey; Zhao, Ling
Expression Atlas update: gene and protein expression in multiple species
database summary
Expression Atlas update: gene and protein expression in multiple species
database summary
Expression Atlas Papatheodorou, Irene; Fonseca, Nuno; Keays, Maria; Tang, Amy; Barrera Casanova, Elisabet; Bazant, Wojciech; Burke, Melissa; Füllgrabe, Anja; Muñoz-Pomer Fuentes, Alfonso; George, Nancy; Huerta Martinez, Laura; Koskinen, Satu; Mohammed, Suhaib; Geniza, Matthew; Preece, Justin; Jaiswal, Pankaj; Jarnuczak, Andrew; Huber, Wolfgang; Stegle, Oliver; Vizcaino, Juan Antonio; Brazma, Alvis; Petryszak, Robert
Expression Atlas (http://www.ebi.ac.uk/gxa) is an added value database that
database summary
Expression Atlas (http://www.ebi.ac.uk/gxa) is an added value database that
database summary
ExtraTrain Tobes, R., Pareja, E., Pareja-Tobes, P., Manrique, M., Pareja-Tobes, E. Bonal, J.
Extragenic and Transcriptional information in prokaryotic organisms
database summary
Extragenic and Transcriptional information in prokaryotic organisms
database summary
EzCatDB Nagano, Nozomi; Nakayama, Naoko; Ikeda, Kazuyoshi; Fukuie, Masaru; Yokota, Kiyonobu; Doi, Takuo; Kato, Tsuyoshi; Tomii, Kentaro
Enzyme Catalytic Mechanism Database
database summary
Enzyme Catalytic Mechanism Database
database summary
Factorbook Weng, Zhiping; Pratt, Henry; Andrews, Gregory; Phalke, Nishigandha; Purcaro, Michael; van der Velde, Arjan; Moore, Jill
Factorbook: An updated catalog of transcription factor motifs and candidate
database summary
Factorbook: An updated catalog of transcription factor motifs and candidate
database summary
FAIRDOMHub Goble, Carole; Wolstencroft, Katherine; Krebs, Olga; Snoep, Jacky; Stanford, Natalie; Bacall, Finn; Golebiewski, Martin; Kuzyakiv, Rostyslav; Nguyen, Quyen; Owen, Stuart; Soiland-Reyes, Stian; Straszewski, Jakub; van Niekerk, Dawie; Williams, Alan; Malmstroem, Lars; Rinn, Bernd; Müller, Wolfgang
Findable, Accessible, Interoperable and Reusable Data, Operating procedures and Models
database summary
Findable, Accessible, Interoperable and Reusable Data, Operating procedures and Models
database summary
FANTOM Kasukawa, Takeya; Abugessaisa, Imad; Ramilowski, Jordan; Lizio, Marina; Severin, Jessica; Hasegawa, Akira; Harshbarger, Jayson; Kondo, Atsushi; Noguchi, Shuhei; Yip, Chi Wai; Ooi, Jasmine Li Ching; Tagami, Michihira; Hori, Fumi; Agrawal, Saumya; Hon, Chun
Functional annotation of mouse full-length cDNA clones
database summary
Functional annotation of mouse full-length cDNA clones
database summary
FARME DB James C. Wallace, Jesse A. Port, Marissa N. Smith, and Elaine M. Faustman
Functional Antibiotic Resistance Metagenomic Element Database
database summary
Functional Antibiotic Resistance Metagenomic Element Database
database summary
FAVOR Zhou, Hufeng; Arapoglou, Theodore; Li, Xihao; Li, Zilin; Zheng, Xiuwen; Moore, Jill; Asok, Abhijith; kumar, sushant; Blue, Elizabeth; Buyske, Steven; Cox, Nancy J.; Felsenfeld, Adam; Gerstein, Mark; Kenny, Eimear; Li, Bingshan; Matise, Tara; Philippakis,
Functional Annotation of Variants - Online Resource
database summary
Functional Annotation of Variants - Online Resource
database summary
FCP GarcÃÂa-Serna R., Opatowski L. and Mestres J.
Functional coverage of the proteome by enzyme structures
database summary
Functional coverage of the proteome by enzyme structures
database summary
FerrDb Zhou, Nan; Yuan, Xiao-Qing; Du, Qingsong; Zhang, Zhiyu; Shi, Xiaolei; Bao, Jinku; Ning, Yuping; Peng, Li
Ferroptosis regulators
database summary
Ferroptosis regulators
database summary
FGDB Gueldener U.1,3, Mannhaupt G.2, Muensterkoetter M.3, Haase D.3, Oesterheld M. 3, Stuempflen V.3, Mewes H.W.1,3 and Adam G.4
Plant pathogen Fusarium graminearum genome database
database summary
Plant pathogen Fusarium graminearum genome database
database summary
FINDbase Patrinos, George; Papadopoulos, Petros; Viennas, Emmanouil; Gkantouna, Vassiliki; Pavlidis, Cristiana; Bartsakoulia, Marina; Ioannou, Zafeiria-Marina; Ratbi, Ilham; Sefiani, Abdelaziz; Tsaknakis, John; Poulas, Konstantinos; Tzimas, Giannis
Frequencies of INherited Disorders: Pathogenic mutation frequencies worldwide
database summary
Frequencies of INherited Disorders: Pathogenic mutation frequencies worldwide
database summary
FireDB Tress, Michael; Maietta, Paolo; Lopez, Gonzalo; Carro, Angel; Leon, Leticia; Pingilley, Benjamin; Valencia, Alfonso
Functionally Important REsidues in protein structures
database summary
Functionally Important REsidues in protein structures
database summary
FireProtDB Bednar, David; Stourac, Jan; Dubrava, Juraj; Musil, Milos; Horackova, Jana; Damborsky, Jiri; Mazurenko, Stanislav
Protein stability data
database summary
Protein stability data
database summary
FL-circAS Chuang, Trees-Juen; Chiang, Tai-Wei; Jhong, Song-En; Chen, Yu-Chen; Chen, Chia-Ying; Wu, Wei-Sheng
FL-circAS: an integrative resource and analysis for full-length sequences and alternative splicing of circular RNAs with nanopore sequencing
database summary
FL-circAS: an integrative resource and analysis for full-length sequences and alternative splicing of circular RNAs with nanopore sequencing
database summary
FlavorDB Bagler, Ganesh; Garg, Neelansh; Sethupathy, Apuroop; Tuwani, Rudraksh; NK, Rakhi; Dokania, Shubham; Iyer, Arvind; Gupta, Ayushi; Agrawal, Shubhra; Singh, Navjot; Shukla, Shubham; Kathuria, Kriti; Badhwar, Rahul; Kanji, Rakesh; Jain, Anupam; Kaur, Avneet; Nagpal, Rashmi
All known flavor molecules, their flavor profiles, and chemical descriptors
database summary
All known flavor molecules, their flavor profiles, and chemical descriptors
database summary
FLIBase He, Xianghuo; Shi, Qili; Li, Xinrong; Liu, Yizhe; Chen, Zhiao
FLIBase: a comprehensive repository of full-length isoforms across human cancers and tissues
database summary
FLIBase: a comprehensive repository of full-length isoforms across human cancers and tissues
database summary
FLOR-ID Périlleux, Claire; Bouché, Frédéric; Lobet, Guillaume; Tocquin, Pierre
Flowering Interactive Database
database summary
Flowering Interactive Database
database summary
FlyAtlas 2 Leader, David; Krause, Sue; Overend, Gayle; Dow, Julian
FlyAtlas 2 in 2022: enhancements to the Drosophila melanogaster expression
database summary
FlyAtlas 2 in 2022: enhancements to the Drosophila melanogaster expression
database summary
FlyFactorSurvey Lihua Julie Zhu 1,2, Ryan G. Christensen 3, Majid Kazemian 4, Christopher J. Hull 5, Metewo Selase Enuameh 1, Matthew D. Basciotta 1, Jessie A. Brasefield 1, Cong Zhu 1, Yuna Asriyan 1, David S. Lapointe 5, Saurabh Sinha 4,6, Scot A. Wolfe 1,7 and Michael H. Brodskyp 1,2
Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system
database summary
Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system
database summary
FlyMine Lyne R., Burns G., Mata J., Penkett C.J., Rustici G., Chen D., Langford C., Vetrie D. and Bahler J.
An integrated database for Drosophila and Anopheles genomics
database summary
An integrated database for Drosophila and Anopheles genomics
database summary
FlyRNAi Hu, Yanhui; Comjean, Aram; Rodiger, Jonathan; Liu, Yifang; Gao, Yue; Chung, Verena; Zirin, Jonathan; Perrimon, Norbert; Mohr, Stephanie
The Drosophila RNAi Screening Center Database
database summary
The Drosophila RNAi Screening Center Database
database summary
FlyTF Pfreundt, U.1,2, James, D.1, Tweedie, S.2, Wilson, D.3, Teichmann, S.3, and Adryan, B.1,2
Drosophila transcription factors
database summary
Drosophila transcription factors
database summary
ForestTreeDB Pavy N.1, Johnson J.2, Crow J.2, Paule C.2, Kunau T.2, MacKay J.1 and Retzel E.2
Annotated ESTs from diverse organs of spruce, pine and poplar
database summary
Annotated ESTs from diverse organs of spruce, pine and poplar
database summary
fPOP Yan Yuan Tseng, Z. Jeffrey Chen, and Wen-Hsiung Li
Footprinting protein functional surfaces by comparative patterns
database summary
Footprinting protein functional surfaces by comparative patterns
database summary
FragmentStore Jessica Ahmed 1, Catherine L. Worth 1, Paul Thaben 1, Christian Matzig 1, Corinna Blasse 1, Mathias Dunkel 1 and Robert Preissner 1
Comprehensive database of fragments linking metabolites, toxic molecules and drugs
database summary
Comprehensive database of fragments linking metabolites, toxic molecules and drugs
database summary
FunCoup Sonnhammer, Erik; Ogris, Christoph; Kaduk, Mateusz; Guala, Dimitri,
This release of the FunCoup database (http://funcoup.sbc.su.se) is the four
database summary
This release of the FunCoup database (http://funcoup.sbc.su.se) is the four
database summary
FunCoup Sonnhammer, Erik L.L.; Schmitt, Thomas; Ogris, Christoph
Networks of functional coupling
database summary
Networks of functional coupling
database summary
Fungal Genome Size Database Kullman, B.1, Tamm, H. 1,2 and Kullman, K.3
Genome sizes of various fungi
database summary
Genome sizes of various fungi
database summary
Fungal Names Wu, Linhuan; Wang, Fang; Wang, Ke; Cai, Lei; Zhao, Mingjun; Kirk, Paul M.; Fan, Guomei; Sun, Qinglan; Li, Bo; Wang, Shuai; Yu, Zhengfei; Han, Dong; Ma, Juncai; Yao, Yijian
Fungal taxonomy
database summary
Fungal taxonomy
database summary
FunSimMat
Gene Ontology-based functional similarity values for proteins and protein families
database summary
Gene Ontology-based functional similarity values for proteins and protein families
database summary
FunTree Nicholas Furnham
Evolution of novel enzyme functions in enzyme superfamilies
database summary
Evolution of novel enzyme functions in enzyme superfamilies
database summary
FusariumDB Bongsoo Park, Jongsun Park, Kyeong-Chae Cheong, Jaeyoung Choi, Kyongyong Jung, Donghan Kim, Yong-Hwan Lee, Todd J. Ward, Kerry O'Donnell, David M. Geiser, and Seogchan Kang
Comparative genomics of Fusarium strains
database summary
Comparative genomics of Fusarium strains
database summary
FusionCancer Wang Y, Wu N, Liu J, Wu Z, Dong D
FusionCancer - a database of cancer fusion genes derived from RNA-Seq data
database summary
FusionCancer - a database of cancer fusion genes derived from RNA-Seq data
database summary
FusionDB Mahlich, Yannick; Zhu, Chengsheng; Miller, Carl; Bromberg, Yana
No description supplied
database summary
No description supplied
database summary
FusionGDB Kim, Pora; Tan, Hua; Liu, Jiajia; Lee, Haeseung ,; Jung, Hyesoo; Kumar, Himansu; Zhou, Xiaobo
FusionGDB 2.0: fusion gene annotation updates aided by deep learning
database summary
FusionGDB 2.0: fusion gene annotation updates aided by deep learning
database summary
FusionNeoAntigen Kim, Pora; Kumar, Himansu; Luo, Ruihan; Wen, Jianguo; Yang, Chengyuan; Zhou, Xiaobo1
FusionNeoAntigen: a resource of Fusion gene-specific Neoantigens
database summary
FusionNeoAntigen: a resource of Fusion gene-specific Neoantigens
database summary
FusionPDB Kim, Pora; Kumar, Himansu; Tang, Lin-Ya; Yang, Chengyuan
FusionPDB: a knowledgebase of human Fusion Proteins
database summary
FusionPDB: a knowledgebase of human Fusion Proteins
database summary
FuzDB Fuxreiter, Monika; Hatos, András; Monzon, Alexander; Tosatto, Silvio; Piovesan, Damiano
FuzDB: a new phase in understanding fuzzy interactions
database summary
FuzDB: a new phase in understanding fuzzy interactions
database summary
G protein research platform Gloriam, David; Pándy-Szekeres, Gáspár; Esguerra, Mauricio; Hauser, Alexander; Caroli, Jimmy; Munk, Christian; Pilger, Steven; Keserű, György; Kooistra, Albert
G proteins and their interactions
database summary
G proteins and their interactions
database summary
GÉnoPlante-Info Samson, D., Legeai, F., Karsenty, E., Reboux, S., Veyrieras, J.-B., Just, J., Barillot, E.
Plant genomic data derived from the GÉnoplante consortium
database summary
Plant genomic data derived from the GÉnoplante consortium
database summary
G4Atlas Yu, Haopeng; Qi, Yiman; Yang, Bibo; Yang, Xiaofei; Ding, Yiliang
Experimentally determined RNA G-quadruplexes in transcriptomes
database summary
Experimentally determined RNA G-quadruplexes in transcriptomes
database summary
G4LDB Yang, Shu; Wang, Yu-huan; Yang, Qianfan; Lin, Xiao; Chen, Die; Wang, Zhi-yin; Chen, Bin; Han, Hua-Yi; Chen, Hao-Di; Cai, Kai-Cong; Li, Qian..; Li, Feng ,`; Tang, Yalin
G-quadruplexes and ligands
database summary
G-quadruplexes and ligands
database summary
GABI-Kat SimpleSearch database Weisshaar, Bernd; Kleinboelting, Nils; Huep, Gunnar; Kloetgen, Andreas; Viehoever, Prisca
T-DNA insertions in Arabidopsis, their flanking sequence tags
database summary
T-DNA insertions in Arabidopsis, their flanking sequence tags
database summary
GabiPD Riaño-Pachón, D.M.1,2, Nagel, A.1, Neigenfind, J.1, Wagner, R.1, Basekow, R.1, Weber, E.1, Mueller-Roeber, B.2, Diehl, S.3, and Kersten, B.1,2
A plant integrative 'omics' database
database summary
A plant integrative 'omics' database
database summary
GAIA Ouangraoua, Aida; Vannutelli, Anais; Schell, Lauriane; Perreault, Jean-Pierre
Predicted G-quadruplexes in genomes and transcriptomes
database summary
Predicted G-quadruplexes in genomes and transcriptomes
database summary
GBshape Chiu, Tsu-Pei; Yang, Lin; Zhou, Tianyin; Main, Bradley; Parker, Stephen CJ; Nuzhdin, Sergey; Tullius, Thomas; Rohs, Remo
Genome Browser for DNA shape annotations
database summary
Genome Browser for DNA shape annotations
database summary
gcPathogen Wu, Linhuan; Guo, Chongye; Chen, Qi; Fan, Guomei; Sun, Yan; Nie, Jingyi; Li, Shiwen; Wang, Shuai; Meng, Zhen; Zhou, Yuanchun; Shen, Zhihong; Ma, Juncai; Sun, Qinglan
gcPathogen: a comprehensive genomic resource of human pathogens for public health
database summary
gcPathogen: a comprehensive genomic resource of human pathogens for public health
database summary
gcType Wu, Linhuan; Shi, Wenyu; Sun, Qinglan; Fan, Guomei; Sugawara, Hideaki; Ohkuma, Moriya; Itoh, Takashi; Zhou, Yuguang; Cai, Man; Kim, Song-Gun; Lee, Jung-Sook; Sedlacek, Ivo; Arahal, David; Lucena, Teresa; Kawasaki, Hiroko; Evtushenko, Lyudmila; Weir, Bevan
WDCM 10K sequencing projects
database summary
WDCM 10K sequencing projects
database summary
GDPF Zhang, Zheng; Pan, Zhuo; Li, Dan-dan; Li, Peng; Geng, Yu; Jiang, Yiru; Liu, Ya; Li, Yue-zhong
GDPF: a data resource for the distribution of prokaryotic protein families across the global biosphere
database summary
GDPF: a data resource for the distribution of prokaryotic protein families across the global biosphere
database summary
GDSC Mathew Garnett
Genomics of Drug Sensitivity in Cancer: Sensitivity for anti-cancer drugs in various cell lines
database summary
Genomics of Drug Sensitivity in Cancer: Sensitivity for anti-cancer drugs in various cell lines
database summary
GEISHA Antin, Parker B; Yatskievych, Tatiana; Davey, Sean; Darnell, Diana
Gallus expression in situ hybridization analysis
database summary
Gallus expression in situ hybridization analysis
database summary
GELBANK Babnigg G., Giometti C.S.
2D gel electrophoresis patterns from completed genomes
database summary
2D gel electrophoresis patterns from completed genomes
database summary
GEM2Net Zaag, Rim; Tamby, Jean; Guichard, Cécile; Tariq, Zakia; Rigaill, Guillem; Delannoy, Etienne; Renou, Jean; Balzergue, Sandrine; Mary-Huard, Tristan; Aubourg, Sébastien; Martin-Magniette, Marie; Brunaud, Véronique
Arabidopsis thaliana genes involved in stress response
database summary
Arabidopsis thaliana genes involved in stress response
database summary
GeMInA Lynn M. Schriml1, Cesar Arze1, Suvarna Nadendla1, Anu Ganapathy1, Victor Felix1, Anup Mahurkar1, Katherine Phillippy2, Aaron Gussman1,2, Sam Angiuoli1, Elodie Ghedin3, Owen White1 and Neil Hall4
Genomic Metadata for Infectious Agents
database summary
Genomic Metadata for Infectious Agents
database summary
GenBank Sayers, Eric; Cavanaugh, Mark; Clark, Karen; Pruitt, Kim; Sherry, Stephen; Yankie, Linda; Karsch-Mizrachi, Ilene
Genbank
database summary
Genbank
database summary
GENCODE Frankish, Adam ; Carbonell, Silvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M.; Sisu, Cristina; Wright, James; Arnan, Carme; Banerjee, Abhimanyu; Barnes, If; Bennett, Ruth; Berry, Andrew.; Bignell, Alexandra; Boix, Carles; Calvet
GENCODE: reference annotation for the human and mouse genomes in 2023
database summary
GENCODE: reference annotation for the human and mouse genomes in 2023
database summary
GenColors Marius Felder
Genome annotation and comparison database for smaller genomes
database summary
Genome annotation and comparison database for smaller genomes
database summary
Gene Expression Barcode McCall, Matthew; Jaffee, Harris; Zelisko, Susan; Sinha, Neeraj; Hooiveld, Guido; Irizarry, Rafael; Zilliox, Michael
Gene expression data sorted into two groups: expressed and not expressed genes
database summary
Gene expression data sorted into two groups: expressed and not expressed genes
database summary
Gene Expression Nebulas Zhang, Zhang; Zhang, Yuansheng; Zou, Dong; Zhu, Tongtong; Xu, Tianyi; Chen, Ming; Niu, Guangyi; Wenting, Zong; Pan, Rong; Jing, Wei; Sang, Jian; Liu, Chang; Xiong, Yujia; Sun, Yubin; Zhai, Shuang; Chen, Huanxin; Zhao, Wen-Ming; Xiao, Jingfa; Bao, Yi-Ming;
Expression profiles across species, bulk and single cell
database summary
Expression profiles across species, bulk and single cell
database summary
Gene Ontology Albou, Laurent-Philippe; Thomas, Paul; Mungall, Chris; Blake, Judith; Sternberg, Paul; Cherry, J. Michael; Gaudet, Pascale; Van Auken, Kimberly; Hill, David P; Carbon, Seth; Mi, Huaiyu'; Aleksander, Suzi
Gene Ontology Database
database summary
Gene Ontology Database
database summary
Gene Wiki Jon W. Huss III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel Pizarro, Faramarz Valafar, John B. Hogenesch, and Andrew I. Su
An informal collection of pages on human genes
database summary
An informal collection of pages on human genes
database summary
Gene3D Lees, Jonathan; Lewis, Tony; Sillitoe, Ian; Dawson, Natalie; Lam, Su Datt; Das, Sayoni; Clarke, Tristan; Lee, David; Orengo, Christine
No description supplied
database summary
No description supplied
database summary
Gene3D Lees JG, Lee D, Studer RA, Dawson NL, Sillitoe I, Das S, Yeats C, Dessailly BH, Rentzsch R, Orengo CA.
Precalculated structural assignments for whole genomes
database summary
Precalculated structural assignments for whole genomes
database summary
GeneAnnot Chalifa-Caspi, V., Shmueli, O., Shmoish, M., Shklar, M.,Rosen, N., Benjamin-Rodrig, H., Yanai, I., Ophir, R., Iny Stein, T., Kats, P., Almashanu, L., Safran, M., Lancet, D.
Revised and improved annotation of Affymetrix human gene probe sets
database summary
Revised and improved annotation of Affymetrix human gene probe sets
database summary
GeneCards Safran, M., Shmueli, O., Rosen, N., Shmoish, M., Shklar, M., Benjamin-Rodrig, H., Almashanu, L., Chalifa-Caspi, V., Lancet, D.
Integrated database of human genes, maps, proteins, and diseases
database summary
Integrated database of human genes, maps, proteins, and diseases
database summary
GeneDB The GeneDB Team
Curated database for protozoan and bacterial genomes sequenced at the Sanger Centre
database summary
Curated database for protozoan and bacterial genomes sequenced at the Sanger Centre
database summary
GeneFriends de Magalhães, João Pedro; Raina, Priyanka; Guinea, Rodrigo; Chatsirisupachai, Kasit; De Almeida Lopes, Ines; Farooq, Zoya; Guerra, Cristina; Solyom, Csaba
GeneFriends: Gene co-expression databases and tools for humans and model or
database summary
GeneFriends: Gene co-expression databases and tools for humans and model or
database summary
GeneFriends de Magalhães, João Pedro; van Dam, Sipko; Craig, Thomas
RNAseq based human gene and transcript co-expression map
database summary
RNAseq based human gene and transcript co-expression map
database summary
GeneLoc Rosen, N., Chalifa-Caspi, V., Shklar, M., Almashanu, L., Safran, M., Lancet, D.
Gene Location database, formerly known as Unified database for human genome mapping (UDB)
database summary
Gene Location database, formerly known as Unified database for human genome mapping (UDB)
database summary
GeneNet Ananko, E.A., Podkolodny, N.L., Stepanenko, I.L., Podkolodnaya, O.A., Rasskazov, D.A., Miginsky, D.S., Likhoshvai, V.A., Ratushny, A.V., Podkolodnaya, N.N., Kolchanov, N.A.
Database on gene network components
database summary
Database on gene network components
database summary
GeneNote Shmueli, O., Shmoish, M., Rosen, N., Benjamin-Rodrig, H., Yanai, I., Ophir, R., Shklar, M., Almashanu, L., Madi, A., Sirota, A., Kats, P., Chalifa-Caspi, V., Safran, M., Lancet, D.
Human genes expression profiles in healthy tissues
database summary
Human genes expression profiles in healthy tissues
database summary
GeneSigDB Baker, Erich; Jay, Jeremy; Bubier, Jason; Langston, Michael; Chesler, Elissa
Gene Signature DataBase
database summary
Gene Signature DataBase
database summary
GEneSTATION Rokas, Antonis ; Kim, Mara; Cooper, Brian; Venkat, Rohit; Phillips, Julie; Eidem, Haley; Hirbo, Jbril; Nutakki, Sashank; Williams, Scott; Muglia, Louis; Capra, John; Petren, Kenneth; Abbot, Patrick; McGary, Kriston
Evolutionary genomics of pregnancy-related tissues and phenotypes
database summary
Evolutionary genomics of pregnancy-related tissues and phenotypes
database summary
Genetic Codes
Deviations from the standard genetic codes in various organisms and organelles
database summary
Deviations from the standard genetic codes in various organisms and organelles
database summary
GenoBase Otsuka, Yuta; Muto, Ai; Takeuchi, Rikiya; Okada, Chihiro; Ishikawa, Motokazu; Nakamura, Kouichiro; Yamamoto, Natsuko; Dose, Hitomi; Nakahigashi, Kenji; Tanishima, Shigeki; Nomura, Wataru; Suharnan, Sivasundaram; Nakayashiki, Toru; Aref, Walid; Gribskov, Michael; Tohsato, Yukako,; Bochner, Barry; Kihara, Daisuke; Conway, Tyrrell; Wanner, Barry; Mori, Hirotada
Escherichia coli K-12 in-frame, single-gene knockout mutants
database summary
Escherichia coli K-12 in-frame, single-gene knockout mutants
database summary
Genome Database for Rosaceae Main, Dorrie; Jung, Sook; Ficklin, Stephen; Lee, Taein; Cheng, Chun-Huai; Blenda, Anna; Zheng, Ping; Yu, Jing; Bombarely, Aureliano; Cho, Il-Hyung; Yu, Sushan; Evans, Katherine; Peace, Cameron; Abbott, Albert; Mueller, Lukas; Olmstead, Mercy
Genetics and genomics data on apple, cherry, peach, pear, raspberry, rose and strawberry
database summary
Genetics and genomics data on apple, cherry, peach, pear, raspberry, rose and strawberry
database summary
Genome Project Database Klimke W., Kochergin A., Landrum M., Pruitt K., Resenchuk S., Sermrann P. and Tatusova T.
NCBI's database of large-scale genome sequencing projects
database summary
NCBI's database of large-scale genome sequencing projects
database summary
Genome Reviews Kersey P.1, Bower L.1, Morris L.1, Horne A.1, Petryszak R.1, Kanz C.1, Kanapin A.1, Das U.1, Mulder N.1, Pruess M.1, Duggan K.1, Quevillon E.1, McLaren P.1, Kulikova T.1, Faruque N.1, Whitfield E.1, Duret L.2, Penel S.2, Reuter I.3, Zhu W.1 and Apweiler R.1
Integrated view of complete genomes
database summary
Integrated view of complete genomes
database summary
Genome3D Lewis, Tony; Sillitoe, Ian; Andreeva, Tony; Blundell, Tom; Buchan, Daniel; Chothia, Cyrus; Cozzetto, Domenico; Dana, José; Filippis, Ioannis; Gough, Julian; Jones, David T; Kelley, Lawrence; Kleywegt, Gerard; Minneci, Federico; Murzin, Alexey; Ochoa, Bernardo; Oates, Matt; Punta, Marco; Rackham, Owen J; Stahlhacke, Jonathan; Sternberg, Michael; Velankar, Sameer; Mistry, Jaina
Domain structure predictions and 3D models for proteins from model genomes
database summary
Domain structure predictions and 3D models for proteins from model genomes
database summary
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation Sillitoe, Ian;Andreeva, Antonina;Blundell, Tom L;Buchan, Daniel W A;Finn, Robert D;Gough, Julian;Jones, David;Kelley, Lawrence A;Paysan-Lafosse, Typhaine;Lam, Su Datt;Murzin, Alexey G;Pandurangan, Arun Prasad;Salazar, Gustavo A;Skwark, Marcin J;Sternberg, Michael J E;Velankar, Sameer;Orengo, Christine
No description supplied
database summary
No description supplied
database summary
GenomeAtlas Hallin, P.F., Jensen, L.J., Skovgaard, M., StÆrfeldt, H.H., Worning, P. and Ussery, D.W.
DNA structural properties of sequenced genomes
database summary
DNA structural properties of sequenced genomes
database summary
GenomeCRISPR Boutros, Michael; Rauscher, Benedikt; Heigwer, Florian; Breinig, Marco; Winter, Jan
High-throughput screening using the CRISPR/Cas-9 system
database summary
High-throughput screening using the CRISPR/Cas-9 system
database summary
GenomeRNAi Schmidt, EE., Pelz, O., Buhlmann, S., Kerr, G., Horn, T., and Boutros, M.
Cell-based RNAi phenotypes database
database summary
Cell-based RNAi phenotypes database
database summary
Genomes OnLine Database (GOLD) Mukherjee Supratim; Stamatis Dimitri; Bertsch Jon; Ovchinnikova Galina; Sundaramurthi Jagadish Chandrabose; Lee Janey; Kandimalla Mahathi; Chen I-Min A; Kyrpides Nikos C; Reddy T.B.K
The Genomes OnLine Database (GOLD) (https://gold.jgi.doe.gov/) is a manuall
database summary
The Genomes OnLine Database (GOLD) (https://gold.jgi.doe.gov/) is a manuall
database summary
GenomeTraFaC Jegga A.G.1,2, Chen J.1,3, Gowrisankar S.1,3, Deshmukh M.A.1, Gudivada R.1,3, Kong S.1, Kaimal V.1,3 and Aronow B.J.1,2,3
Conserved regulatory elements of human and mouse genes
database summary
Conserved regulatory elements of human and mouse genes
database summary
GenomicKB Liu, Jie; Feng, Fan; Tang, Feitong; Gao, Yijia; Zhu, Dongyu; Li, Tianjun; Yang, Shuyuan; Yao, Yuan; Huang, Yuanhao
Knowledge Graph for the Human Genome
database summary
Knowledge Graph for the Human Genome
database summary
Genomicus Louis, Alexandra; Nguyen, Nga Thi Thuy; Vincens, Pierre; dufayard, jean-françois; ROEST CROLLIUS, Hugues
Genomicus 2022: 12th anniversary – Comparative tools for thousands of gen
database summary
Genomicus 2022: 12th anniversary – Comparative tools for thousands of gen
database summary
Genomicus Louis, Alexandra; Nguyen, Nga Thi Thuy; Vincens, Pierre; Roest Crollius, Hugues
No description supplied
database summary
No description supplied
database summary
Genomicus Louis, Alexandra; Nguyen, Nga Thi Thuy; Muffato, Matthieu; Roest Crollius, Hugues
Syntenic relationships between eukaryote genomes
database summary
Syntenic relationships between eukaryote genomes
database summary
GEO Clough, Emily; Barrett, Tanya; Wilhite, Stephen; Ledoux, Pierre; Evangelista, Carlos; Kim, Irene F; Tomashevsky, Maxim; Marshall, Kimberly; Phillippy, Katherine; Sherman, Patti; Lee, Hyeseung; Zhang, Naigong; Serova, Nadezhda; Wagner, Lukas; Zalunin, Vadi
NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update
database summary
NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update
database summary
Gephebase Courtier-Orgogozo, Virginie, Martin, Arnaud
Gephebase is a manually-curated database compiling our accumulated knowledg
database summary
Gephebase is a manually-curated database compiling our accumulated knowledg
database summary
GermOnline Primig, M.
Expression data for the mitotic and meiotic cell cycle and gametogenesis in yeast and higher eukaryotes
database summary
Expression data for the mitotic and meiotic cell cycle and gametogenesis in yeast and higher eukaryotes
database summary
GESS Wan, Jun; Fang, Shuyi; Li, Kailing; Shen, Jikui; Liu, Sheng; LIU, JULI; Yang, Lei; Hu, Chang-Deng
Global Evaluation of SARS-CoV2 Sequences
database summary
Global Evaluation of SARS-CoV2 Sequences
database summary
GETPrime Deplancke, Bart; David, Fabrice; Rougemont, Jacques
Gene- or transcript-specific primers for qPCR
database summary
Gene- or transcript-specific primers for qPCR
database summary
GiardiaDB.org
Genome resources for anaerobic pathogens Trichomonas vaginalis and Giardia lamblia
database summary
Genome resources for anaerobic pathogens Trichomonas vaginalis and Giardia lamblia
database summary
GIMICA J. Tang, X. L. Wu, M. J. Mou, C. Wang, L. D. Wang, F. C. Li, M. Y. Guo, J. Y. Yin, W. Q. Xie, X. N. Wang, Y. X. Wang, Y. B. Ding, W. W. Xue, F. Zhu
Host Genetic and Immune Factors Shaping Human Microbiota
database summary
Host Genetic and Immune Factors Shaping Human Microbiota
database summary
GlycomeDB René Ranzinger, Stephan Herget, Claus-Wilhelm von der Lieth, and Martin Frank
Carbohydrate structures
database summary
Carbohydrate structures
database summary
GlycoPOST Okuda, Shujiro; Watanabe, Yu; Aoki-Kinoshita, Kiyoko; Ishihama, Yasushi
Raw Mass Spectrometry glycomics data
database summary
Raw Mass Spectrometry glycomics data
database summary
GlyTouCan Aoki-Kinoshita, Kiyoko; Fujita, Akihiro; Aoki, Nobuyuki; Shinmachi, Daisuke; Matsubara, Masaaki; Tsuchiya, Shinichiro; Shiota, Masaaki; Ono, Tamiko; Yamada, Issaku
International Glycan Structure Repository
database summary
International Glycan Structure Repository
database summary
GMRepo Chen, Weihua; Dai, Die; Zhu, Jiaying; Sun, Chuqing; Li, Min; Liu, Jinxin; Wu, Sicheng; Ning, Kang; He, Lijie; Zhao, Xing-Ming
GMrepo v2: a curated human gut microbiome database with special focus on di
database summary
GMrepo v2: a curated human gut microbiome database with special focus on di
database summary
GOA Huntley, Rachael; Sawford, Tony; Mutowo-Meullenet, Prudence; Shypitsyna, Aleksandra; Bonilla, Carlos; Martin, Maria; O'Donovan, Claire
Gene ontology annotation in UniProt
database summary
Gene ontology annotation in UniProt
database summary
GOLD Reddy, TBK; Mukherjee, Supratim; Stamatis, Dimitrios; Li, Cindy; Ovchinnikova, Galina; Bertsch, Jon; Sundaramurthi, Jagadish Chandrabose; Kandimalla, Mahathi; Nicolopoulos, Paul; Favognano, Alessandro; Chen, I-Min; Kyrpides, Nikos
Twenty-Five Years of Genomes OnLine Database (GOLD): Data Updates and New F
database summary
Twenty-Five Years of Genomes OnLine Database (GOLD): Data Updates and New F
database summary
GOLD.db - Genomics Of Lipid-associated Disorders Hackl, H., Trost, E., Maurer, M., Hartler, J., Mlecnik, B., Miranda-Saavedra, D., Stocker G., Trajanoski, Z.
Genes, proteins, and pathways implicated in lipid- associated disorders
database summary
Genes, proteins, and pathways implicated in lipid- associated disorders
database summary
GoMapMan Ramšak, Živa; Špela, Baebler; Rotter, Ana; Korbar, Matej; Mozeti?, Igor; Usadel, Björn; Gruden, Kristina
Unified plant-specific gene ontology
database summary
Unified plant-specific gene ontology
database summary
GotEnzymes Nielsen, Jens; Li, Feiran; Chen, Yu; Anton, Mihail
Predicted enzyme kinetic parameters
database summary
Predicted enzyme kinetic parameters
database summary
GPCR NaVa database
A database of natural sequence variants within the family of human G Protein-Coupled Receptors
database summary
A database of natural sequence variants within the family of human G Protein-Coupled Receptors
database summary
GPCRdb Pándy-Szekeres, Gáspár; Caroli, Jimmy; Mamyrbekov, Alibek; Kermani, Ali; Keserű, György; Kooistra, Albert; Gloriam, David
GPCRdb in 2023: State-specific structure models using AlphaFold2 and new li
database summary
GPCRdb in 2023: State-specific structure models using AlphaFold2 and new li
database summary
GPCRdb Gloriam, David; Kooistra, Albert; Mordalski, Stefan; Pándy-Szekeres, Gáspár; Esguerra, Mauricio; Mamyrbekov, Alibek; Munk, Christian; Keserű, György
G protein-coupled receptors are the most abundant mediators of both human s
database summary
G protein-coupled receptors are the most abundant mediators of both human s
database summary
GPEdit Han, Leng; Ruan, Hang; Li, Qiang; Liu, Yuan; Liu, Yaoming; Lussier, Charles; Diao, Lixia
A-to-I RNA editing in cancer
database summary
A-to-I RNA editing in cancer
database summary
GproteinDB Gloriam, David; Taracena Herrera, Luis; Pándy-Szekeres, Gáspár; Caroli, Jimmy; Kermani, Ali; Kulkarni, Yashraj; Keserü, György
GproteinDb in 2024: G protein-GPCR AlphaFold2-Multimer models and interfaces
database summary
GproteinDb in 2024: G protein-GPCR AlphaFold2-Multimer models and interfaces
database summary
GPSAdb Guo, Shipeng; Xu, Zhougeng; Dong, Xiangjun; Hu, Dongjie; Jiang, Yanshuang; Wang, Qunxian; Zhang, Jie; Zhou, Qian; Liu, Shengchun; Song, Weihong
Genetic Perturbation Similarity Analysis
database summary
Genetic Perturbation Similarity Analysis
database summary
GPX-Macrophage Expression Atlas Grimes G., Moodie S., Beattie J.S., Craigon M., Dickinson P., Forster T., Livingston A., Mewissen M., Robertson K.A., Ross A.J., Sing G. and Ghazal P.
Gene expression in macrophages
database summary
Gene expression in macrophages
database summary
GrainGenes
Molecular and phenotypic information on wheat, barley, rye, triticale, and oats
database summary
Molecular and phenotypic information on wheat, barley, rye, triticale, and oats
database summary
Gramene Monaco MK, Stein J, Naithani S, Wei S, Dharmawardhana P, Kumari S, Amarasinghe V, Youens-Clark K, Thomason J, Preece J, Pasternak S, Olson A, Jiao Y, Lu Z, Bolser D, Kerhornou A, Staines D, Walts B, Wu G, D'Eustachio P, Haw R, Croft D, Kersey PJ, Stein L, Jaiswal P, Ware D.
A resource for comparative grass genomics
database summary
A resource for comparative grass genomics
database summary
Gramene Ware, Doreen; Tello-Ruiz, Marcela; Naithani, Sushma; Gupta, Parul; Olson, Andrew J; Wei, Sharon; Preece, Justin; Jiao, Yinping; Wang, Bo, .; Chougule, Kapeel; Garg, Priyanka; Elser, Justin; Kumari, Sunita; Kumar, Vivek; Contreras Moreira, Bruno; Naamati,
Gramene (http://www.gramene.org) is a phylogenomic resource for plants, bui
database summary
Gramene (http://www.gramene.org) is a phylogenomic resource for plants, bui
database summary
GRAND Quackenbush, John; Ben Guebila, Marouen; Lopes-Ramos, Camila; Weighill, Deborah; Sonawane, Abhijeet; Burkholz, Rebekka; Shamsaei, Behrouz; Platig, John; Glass, Kimberly; Kuijjer, Marieke
Human gene regulation models
database summary
Human gene regulation models
database summary
GreeNC Aiese Cigliano, Riccardo; Di Marsico, Marco; PaytuvÃ, Andreu; Sanseverino, Walter
GreeNC 2.0: a comprehensive database of plant lncRNA
database summary
GreeNC 2.0: a comprehensive database of plant lncRNA
database summary
GreeNC PaytuvÃ, Andreu; Hermoso Pulido, Antonio; Anzar, Irantzu; Sanseverino, Walter; Aiese Cigliano, Riccardo
Green Non-Coding: lncRNAs in nine plant species
database summary
Green Non-Coding: lncRNAs in nine plant species
database summary
Greengenes DeSantis T.Z.1, Hugenholtz P.2, Larsen N.3, Rojas M.4, Brodie E.L.1, Keller K.5, Huber T.6, Dalevi D.7, Hu P.1 and Andersen G.L.1
A database of chimera-checked prokaryotic 16S rRNA genes
database summary
A database of chimera-checked prokaryotic 16S rRNA genes
database summary
GreenPhylDB Rouard, Mathieu; Guignon, Valentin; Toure, Abdel; Droc, Gaetan; dufayard, jean-françois; Conte, Matthieu
Comparative genomics of rice and Arabidopsis thaliana
database summary
Comparative genomics of rice and Arabidopsis thaliana
database summary
GRNdb Chen, Geng; Fang, Li; Li, Yunjin; Ma, Lu; Xu, Qiyue; Tan, Fei
TF-target relationsips inferred from single cell and bulk RNA-seq datasets
database summary
TF-target relationsips inferred from single cell and bulk RNA-seq datasets
database summary
GRSDB Kostadinov R., Malhotra N., Viotti M., Shine R., D’Antonio L. and Bagga P.
Quadruplex forming 'G'-rich sequences in mammalian pre-mRNA
database summary
Quadruplex forming 'G'-rich sequences in mammalian pre-mRNA
database summary
GSRS Southall, Noel; Peryea, Tyler; Miller, Mitchell; Katzel, Daniel; Anderson, Niko; Neyra, Jorge; Stemann, Sarah; Nguyen, Dac-Trung; Amugoda, Dammika; Newatia, Archana; Ghazzaoui, Ramez; Johanson, Elaine; Diederik, Herman; Callahan, Lawrence; Switzer, Frank
Global Substance Registration System
database summary
Global Substance Registration System
database summary
GTDB Parks, Donovan; Chuvochina, Maria; Rinke, Christian; Mussig, Aaron; Chaumeil, Pierre-Alain; Hugenholtz, Philip
Genome Taxonomy Database
database summary
Genome Taxonomy Database
database summary
GTOP - Genomes To Protein structures Fukuchi, S., Homma, K., Sakamoto, S., Nishikawa, K.
Protein fold predictions from genome sequences
database summary
Protein fold predictions from genome sequences
database summary
GTRD Yevshin, Ivan;Sharipov, Ruslan;Kolmykov, Semyon;Kondrakhin, Yury;Kolpakov, Fedor
Gene Transcription Regulation Database
database summary
Gene Transcription Regulation Database
database summary
GutMDisorder Cheng, Liang; Qi, Changlu; Cai, Yiting; Qian, Kai; Li, Xuefeng; Ren, Jialiang; Wang, Ping; Fu, Tongze; zhao, tianyi; Zhang, Xue1
gutMDisorder v2.0: a comprehensive database for dysbiosis of the gut microb
database summary
gutMDisorder v2.0: a comprehensive database for dysbiosis of the gut microb
database summary
gutMGene Cheng, Liang; Qi, Changlu; Yang, Haixiu; Lu, Minke; Cai, Yiting; Fu, Tongze; Ren, Jialiang; Jin, Qu; Zhang, Xue1
Target genes of gut microbes and microbial metabolites in human and mouse
database summary
Target genes of gut microbes and microbial metabolites in human and mouse
database summary
GVM Song, Shuhui; Li, Cuiping; Tian, Dongmei; Tang, Bi-Xia; Liu, Xiaonan; Teng, Xufei; Zhao, Wen-Ming; Zhang, Zhang
Genome Variation Map
database summary
Genome Variation Map
database summary
GWAS Atlas Liu, Xiaonan; Tian, Dongmei; Li, Cuiping; Tang, Bi-Xia; Wang, Zhonghuang; Zhang, Rongqin; Pan, Yitong; Wang, Yi; Zou, Dong; Zhang, Zhang; Song, Shuhui
GWAS Atlas: an updated knowledgebase integrating more curated associations
database summary
GWAS Atlas: an updated knowledgebase integrating more curated associations
database summary
GWAS Catalog Sollis, Elliot; Mosaku, Abayomi; Abid, Ala; Buniello, Annalisa; Cerezo, Maria; Gil, Laurent; Groza, Tudor; Gunes, Osman; Hall, Peggy; Hayhurst, James D; Ibrahim, Arwa; Ji, Yue; John, Sajo; Lewis, Elizabeth; MacArthur, Jacqueline; McMahon, Aoife; Osumi-Sut
The NHGRI-EBI GWAS Catalog: Knowledgebase and deposition resource
database summary
The NHGRI-EBI GWAS Catalog: Knowledgebase and deposition resource
database summary
GWAS Central Beck, Tim; Rowlands, Thomas; Shorter, Tom; Brookes, Anthony
GWAS Central: an expanding resource for finding and visualising genotype an
database summary
GWAS Central: an expanding resource for finding and visualising genotype an
database summary
GWAS Diagram Browser Parkinson, Helen; Welter, Danielle; MacArthur, Jacqueline; Morales, Joannella; Burdett, Tony; Hall, Peggy; Junkins, Heather; Klemm, Alan; Xu, Ming; Flicek, Paul; Manolio, Teri; Hindorff, Lucia
No description supplied
database summary
No description supplied
database summary
GWASdb Junwen Wang
Human genetic variants identified by genome wide association studies
database summary
Human genetic variants identified by genome wide association studies
database summary
GWIDD Petras J. Kundrotas, Zhengwei Zhu, and Ilya A. Vakser
Genome-WIde Docking Database: 3D structures of protein complexes
database summary
Genome-WIde Docking Database: 3D structures of protein complexes
database summary
GWIPS-viz Michel, Audrey; Fox, Gearoid; Kiran, Anmol; De Bo, Christof; O'Connor, Patrick; Heathy, Steaphen; Mullan, James; Donohue, Claire; Higgins, Desmond; Baranov, Pavel
Genome-Wide Information on Protein Synthesis in vivo using ribosome profiling
database summary
Genome-Wide Information on Protein Synthesis in vivo using ribosome profiling
database summary
GWIPS-viz Baranov, Pavel; Michel, Audrey; Kiniry, Stephen; O'Connor, Patrick; Mullan, James
No description supplied
database summary
No description supplied
database summary
H-Invitational Database, an integrated database of human genes and transcripts Takeda, J.1, Yamasaki, C. 1, Murakami, K. 1, Sera, M.1, Hara, Y. 1, Nagai, Y. 1, Mamiya, K. 1, Endo, T. 1, Habara, T. 1, Obi, N. 1, Imanishi, T. 1 and Gojobori, T. 1,2
Full-length human cDNA clones
database summary
Full-length human cDNA clones
database summary
H2DB Eli Kaminuma
Heritability data for various species with trait-associated genomic loci
database summary
Heritability data for various species with trait-associated genomic loci
database summary
HACER: an atlas of human active enhancers to interpret regulatory variants Wang, Jing;Dai, Xizhen;Berry, Lynne D;Cogan, Joy D;Liu, Qi;Shyr, Yu
No description supplied
database summary
No description supplied
database summary
HAGR de Magalhães, João Pedro; Farooq, Zoya; arantes, gabriel; Avelar, Roberto; Barardo, Diogo; Chatsirisupachai, Kasit; Clark, Peter; De Almeida Lopes, Ines; Johnson, Emily; Novoa, Guy; senez, ludovic; De-Souza, Evandro A.; Talay, Angelo; Thornton, Daniel; To, Paul
Human Ageing Genomic Resources: updates on key databases in ageing research
database summary
Human Ageing Genomic Resources: updates on key databases in ageing research
database summary
HAGR de Magalhães, João Pedro; Tacutu, Robi; Thornton, Daniel; Budovsky, Arie; Johnson, Emily; Barardo, Diogo; Craig, Thomas; Lehmann, Gilad; Toren, Dmitri; Fraifeld, Vadim
No description supplied
database summary
No description supplied
database summary
HAGR - Human Ageing Genomic Resources Tacutu, R.1, Craig, T.1, Budovsky, A. 2,3, Wuttke, D. 1, Lehmann, G. 2, Taranukha, D2, Costa, J. 4, Fraifeld, V.E. 2 and de MagalhÃes J.P.1,*
Genes related to ageing in humans and model organisms
database summary
Genes related to ageing in humans and model organisms
database summary
HALL ZHANG, WEIQI; Hao, Li; Wu, Song; Li, Jiaming; xiong, zhuang; Yang, Kuan; Ye, Weidong; REN, JIE; Wang, Qiaoran; Xiong, Muzhao; Zheng, Zikai; Zhang, Shuo; Han, Zichu; Yang, Peng; Jiang, Beier; Ping, Jiale; Zuo, Yuesheng; Lu, Yongxiao; Cheng, Zhaiqiao; Yan, Haoteng; Wang, Si; Ma, Shuai; Zhang, Bing,.; Zhang, Feng; Ye, Jinlin; qu, jing; Liu, Guang-Hui; Yang, Yun-Gui; Bao, Yi-Ming
HALL: a comprehensive database for human aging and longevity studies
database summary
HALL: a comprehensive database for human aging and longevity studies
database summary
HAMAP Bridge, Alan; Pedruzzi, Ivo; Rivoire, Catherine; Auchincloss, Andrea; Coudert, Elisabeth; Keller, Guillaume; de Castro, Edouard; Baratin, Delphine; Cuche, Béatrice; Bougueleret, Lydie; Poux, Sylvain; Redaschi, Nicole; Xenarios, Ioannis
High-quality Automated and Manual Annotation of microbial Proteomes
database summary
High-quality Automated and Manual Annotation of microbial Proteomes
database summary
HaptenDB Singh M.K., Srivastava S., Raghava G.P.S. and Varshney G.C
Curated database of hapten molecules
database summary
Curated database of hapten molecules
database summary
HbVar Patrinos, George; Giardine, Belinda; Joly, Philippe; Pissard, Serge; Wajcman, Henri; Chui, David; Hardison, Ross
Human haemoglobin variants and thalassemias
database summary
Human haemoglobin variants and thalassemias
database summary
HCAD - Human Chromosome Aberration Database hoffmann@cbio.mskcc.org or valencia@cnio.es
Chromosomal breakpoints and affected genes
database summary
Chromosomal breakpoints and affected genes
database summary
HCMDB Dong, Dong; Zheng, Guantao; Ma, Yijie; Li, Wushuang
Metastasis is the main event leading to death in cancer patients. Over the
database summary
Metastasis is the main event leading to death in cancer patients. Over the
database summary
HDO Schriml, Lynn; Baron, J. Allen; Sanchez-Beato Johnson, Claudia; Schor, Michael; Olley, Dustin; Nickle, Lance; Bearer, Cynthia; Lichenstein, Richard; Koka, Rima; Felix, Victor; Munro, James; Bello, Susan; Bisordi, Katie; Greene, Carol
The DO-KB Knowledgebase: A 20-year journey developing the disease open science ecosystem
database summary
The DO-KB Knowledgebase: A 20-year journey developing the disease open science ecosystem
database summary
HEDD ZHANG, ZHENGDONG; WANG, ZHEN; ZHANG, QUANWEI; ZHANG, WEN; Lin, Jhih-rong; CAI, YING; Mitra, Joydeep
No description supplied
database summary
No description supplied
database summary
Helminth.net Martin, John,; Rosa, Bruce; Ozersky, Philip; Hallsworth-Pepin, Kymberlie; Zhang, Xu; Bhonagiri-Palsikar, Veena; Tyagi, Rahul; Wang, Qi,; Choi, Young-Jun; Gao, Xin; McNulty, Samantha; Brindley, Paul; Mitreva, Makedonka
Parasitic nematode sequencing project
database summary
Parasitic nematode sequencing project
database summary
Hemolytik Raghava, Gajender; Gautam, Ankur; Chaudhary, Kumardeep; Singh, Sandeep; Joshi, Anshika; Anand, Priya; Tuknait, Abhishek; Mathur, Deepika; Varshney, Grish
A Database of Hemolytic and Non-hemolytic Peptides
database summary
A Database of Hemolytic and Non-hemolytic Peptides
database summary
HeRA Han, Leng; Zhang, Zhao.; Hong, Wei; Ruan, Hang; Jing, Ying; Li, Shengli; Liu, Yaoming; Wang, Jun; Li, Wenbo; Diao, Lixia
Human enhancer RNA Atlas
database summary
Human enhancer RNA Atlas
database summary
HERB Zhao, Yi; Fang, ShuangSang; Dong, Lei; Liu, Liu; Guo, Jin-Cheng; Zhao, LianHe; Zhang, JiaYuan; Bu, Dechao; Liu, XinKui; Huo, PeiPei; Cao, WanChen; Dong, QiongYe; Wu, Jia-Rui; Wu, Yang
High-throughput Experiment- and Reference-guided dataBase of TCM
database summary
High-throughput Experiment- and Reference-guided dataBase of TCM
database summary
Herb Ingredient Targets Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu, Qi Liu, Y. Z. Chen, Yixue Li, and Zhiwei Cao
Herbal active Ingredients and their Targets
database summary
Herbal active Ingredients and their Targets
database summary
HervD Atlas Chen, Fei; Li, Cuidan; Qian, Qiheng; Yan, Chenghao; Lu, Mingming; Li, Lin; Li, Pan; Fan, Zhuojing; Lei, Wenyan; Shang, Kang; Wang, Peihan; Wang, Jie; Lu, Tianyi; Huang, Yuting; Yang, Hongwei; Wei, Haobin; Han, Jingwan; Xiao, Jingfa
HervD Atlas: A Curated Knowledgebase of Associations Between Human Endogenous Retroviruses and Diseases
database summary
HervD Atlas: A Curated Knowledgebase of Associations Between Human Endogenous Retroviruses and Diseases
database summary
Het-PDB Navi Yamaguchi, A.1, Tomoda, S.2, Yura, K.3, Go, M.1
Protein-small molecule interactions
database summary
Protein-small molecule interactions
database summary
HGD Elsik, Christine; Walsh, Amy; Triant, Deborah; Le Tourneau, Justin; Shamimuzzaman, Md
Hymenoptera Genome Database
database summary
Hymenoptera Genome Database
database summary
HGD Duan, Guangya; Wu, Gangao; Chen, Xiaoning; Tian, Dongmei; Li, Zhaohua; sun, yanling; Du, Zhenglin1; Hao, Lili; Song, Shuhui; Gao, Yuan; Xiao, Jingfa; Zhang, Zhang; Bao, Yi-Ming; Tang, Bi-Xia; Zhao, Wen-Ming
Homolog Gene Database - expression, traits, variants across species
database summary
Homolog Gene Database - expression, traits, variants across species
database summary
HGNC/VGNC Seal, Ruth; Braschi, Bryony; Gray, Kristian; Jones, Tamsin; Tweedie, Susan; Haim-Vilmovsky, Liora; Bruford, Elspeth
Genenames.org: the HGNC resources in 2023
database summary
Genenames.org: the HGNC resources in 2023
database summary
HGPD Maruyama, Yukio; Kawamura, Yoshifumi; Nishikawa, Tetsuo; Isogai, Takao; Nomura, Nobuo; Goshima, Naoki
Human Gene and Protein Database: experimental results of human proteomics
database summary
Human Gene and Protein Database: experimental results of human proteomics
database summary
HGT-DB, Horizontal Gene Transfer-DataBase Garcia-Vallve, S., Guzman, E, Montero, MA., Romeu, A.
Putative horizontally-transferred genes in prokaryotic genomes
database summary
Putative horizontally-transferred genes in prokaryotic genomes
database summary
HGTree Jeong, Hyeon soo; Sung, Samsun; Kwon, Taehyung; Seo, Minseok; Caetano-Anolles, Kelsey; Choi, Sang Ho; Cho, Seoae; Nasir, Arshan; Kim, Heebal
A database of horizontally transferred genes
database summary
A database of horizontally transferred genes
database summary
HGTree Choi, Youngseok; Ahn, Sojin; Park, Myeongkyu; Lee, SaetByeol; Cho, Seoae; Kim, Heebal
HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method
database summary
HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method
database summary
HHCDB Zhang, Yan; Wang, Hongli; Su, Mu; Xing, Jie; Zhou, Jie; Wang, Jinzhang; Chen, Long; Dong, Haomin; Xue, Wenhui; Liu, Yubo; Wu, Qiong
HHCDB: A Database of Human Heterochromatin Regions
database summary
HHCDB: A Database of Human Heterochromatin Regions
database summary
HHMD Yan Zhang, Jie Lv, Hongbo Liu, Jiang Zhu, Jianzhong Su, Qiong Wu, Yunfeng Qi, Fang Wang, and Xia Li
Human Histone Modification Database
database summary
Human Histone Modification Database
database summary
HiChIPdb Wong, Wing; Zeng, Wanwen; Liu, Qiao; Yin, Qijin; Jiang, Rui
HiChIP regulatory interactions
database summary
HiChIP regulatory interactions
database summary
HieranoiDB Kaduk, Mateusz; Riegler, Christian; Lemp, Oliver; Sonnhammer, Erik
Ortholog groups and trees for 66 proteomes inferred by Hieranoid 2
database summary
Ortholog groups and trees for 66 proteomes inferred by Hieranoid 2
database summary
HIPPIE Schaefer, Martin; Alanis-Lobato, Gregorio; Andrade, Miguel
Human Integrated Protein-Protein Interaction rEference
database summary
Human Integrated Protein-Protein Interaction rEference
database summary
HipSci Clarke, Laura; Streeter, Ian; Harrison, Peter; Faulconbridge, Adam; Flicek, Paul; Parkinson, Helen
Human Induced Pluripotent Stem Cells Initiative
database summary
Human Induced Pluripotent Stem Cells Initiative
database summary
Histome Khare SP1,2, Habib F2, Sharma R2, Gadewal N1, Gupta S1, Galande S2
Human histone database
database summary
Human histone database
database summary
HIT Cao, Zhiwei; Yan, Deyu; Zheng, Genhui; Wang, Caicui; Chen, Zikun; mao, tiantian; Gao, Jian; Yan, Yu; Chen, Xiangyi; Ji, XueJie; Yu, Jinyu; Mo, Saifeng; Wen, Haonan; Han, Wenhao; Zhou, MengDi; Wang, Yuan; Wang, Jun; Tang, KaiLin,
HIT 2.0: An enhanced platform for Herbal Ingredients' Targets
database summary
HIT 2.0: An enhanced platform for Herbal Ingredients' Targets
database summary
HitPredict Hao Ye 1,2, Li Ye 1,2, Hong Kang 3, Duanfeng Zhang 3, Lin Tao 4,5, Kailin Tang 2Xueping Liu 1,2, Ruixin Zhu 3, Qi Liu 3, Y. Z. Chen 5, Yixue Li 2,6, and Zhiwei Cao 3
Quality assessed protein-protein interactions in 9 species
database summary
Quality assessed protein-protein interactions in 9 species
database summary
Hits Pagni, M.1, Falquet, L.1, Iseli, C.2, Jongeneel, V.2, Junier, T.3, Bucher, P.3
A database of protein domains and motifs
database summary
A database of protein domains and motifs
database summary
HIV Drug Resistance Database Urvi Parikh, Brendan A. Larder, John W. Mellors, Raymond F Schinazi, Charles E. Calef
Mutations in HIV genes that confer resistance to anti-HIV drugs
database summary
Mutations in HIV genes that confer resistance to anti-HIV drugs
database summary
HIV RT and Protease Sequence Database Rhee, S.-Y., Gonzales, M.J., Kantor, R., Betts, B.J., Ravela, J., Shafer, R.W.
HIV reverse transcriptase and protease sequences
database summary
HIV reverse transcriptase and protease sequences
database summary
HIV-1 Pruitt, Kim; Ako-Adjei, Danso; Fu, William; Wallin, Craig; Katz, Kenneth; Song, Guangfeng; Darji, Dakshesh; Brister, J.; Ptak, Roger
Interactions between HIV-1 and human proteins
database summary
Interactions between HIV-1 and human proteins
database summary
HLungDB Lishan Wang, Yuanyuan Xiong, Yihua Sun, Zhaoyuan Fang, Li Li, Hongbin Ji, and Tieliu Shi
Database of Human Lung Cancer Research
database summary
Database of Human Lung Cancer Research
database summary
HMDB Wishart, David; Djoumbou, Yannick; Marcu, Ana; Guo, An Chi; Liang, Kevin; Vazquez-Fresno, Rosa; Sajed, Tanvir; Johnson, Daniel; Liang, Carin; Karu, Naama; Sayeeda, Zinat; Lo, Elvis; Assempour, Nazanin; Berjanskii, Mark; Singhal, Sandeep; Arndt, David; Liang, Jack; Badran, Hasan; Grant, Jason; Serra Cayuela, Arnau; Liu, Yifeng; Mandal, Rupasri; Neveu, Vanessa; Pon, Allison; Knox, Craig; Wilson, Michael.; Manach, Claudine; Scalbert, Augustin
No description supplied
database summary
No description supplied
database summary
HMDB Wishart, David; Guo, An Chi; Oler, Eponine; Wang, Fei; Anjum, Afia; Peters, Harrison; Dizon, Raynard; Sayeeda, Zinat; Tian, Siyang; Lee, Brian; Berjanskii, Mark; Mah, Robert; Yamamoto, Mai; Jovel, Juan; Torres-Calzada, Claudia; Hiebert-Giesbrecht, Mickel;
HMDB 5.0: The Human Metabolome Database for 2022
database summary
HMDB 5.0: The Human Metabolome Database for 2022
database summary
HMDB - The Human Metabolome Database Wishart D.S.1,5,7, Tzur D.1, Knox C.1, Eisner R.1, Guo A.C.1, Young N.1, Cheng D.1, Jewell K.1, Arndt D.1, Sawhney S.5, Fung C.5, Nikolai L.1, Lewis M.1, Coutouly M.-A.1, Forsythe I.1, Tang P.1, Shrivastava S.1, Jeroncic K.1, Stothard P.1, Amegbey G.1, Block D.1, Hau D.D.1, Wagner J.1, Miniaci J.2, Clements M.3, Gebremedhin M.3, Guo N.3, Zhang Y.3, Duggan G.E.6, MacInnis G.D.6, Weljie A.M.6, Dowlatabadi R.6, Bamforth F.4, Clive D.3, Greiner R.1, Li L.3, Marrie M.4, Sykes B.D.2, Vogel H.J.6, Querengesser L.1
Curated human metabolite and metabolism data
database summary
Curated human metabolite and metabolism data
database summary
HMDD Cui, Chunmei; Zhong, Bitao; Fan, Rui; Cui, Qinghua
HMDD v4.0: a database for experimentally supported human microRNA-disease associations
database summary
HMDD v4.0: a database for experimentally supported human microRNA-disease associations
database summary
HMDD v2.0 - Human microRNA Disease Database version 2.0 ng Li1,2, Chengxiang Qiu3, Jian Tu2,4, Bin Geng4, Jichun Yang4, Tianzi Jiang3 and Qinghua Cui2,4
Human MicroRNA and Disease Associations
database summary
Human MicroRNA and Disease Associations
database summary
HmtDB - Human Mitochondrial DataBase Rubino, Francesco; Piredda, Roberta; Calabrese, Francesco; Simone, Domenico; Lang, Martin; Calabrese, Claudia; Petruzzella, Vittoria; Tommaseo-Ponzetta, Mila; Gasparre, Giuseppe; Attimonelli, Marcella
Variability data and tools for analysis of human mitochondrial genome sequences
database summary
Variability data and tools for analysis of human mitochondrial genome sequences
database summary
HOCOMOCO Ivan Kulakovskiy
HOmo sapiens COmprehensive MOdel COllection of hand-curated transcription factor binding site models
database summary
HOmo sapiens COmprehensive MOdel COllection of hand-curated transcription factor binding site models
database summary
HOCOMOCO Kulakovskiy, Ivan; Vorontsov, Ilya; Yevshin, Ivan; Sharipov, Ruslan; Fedorova, Alla; Rumynskiy, Evgeniy; Medvedeva, Yulia; Mora, Arturo; Bajic, Vladimir; Papatsenko, Dmitry; Kolpakov, Fedor; Makeev, Vsevolod
HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v11 provides transcr
database summary
HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v11 provides transcr
database summary
HOCOMOCO Kulakovskiy, Ivan; Vorontsov, Ilya; Eliseeva, Irina; Zinkevich, Arsenii; Nikonov, Michael; Abramov, Sergey; Boytsov, Alexandr; Kamenets, Vasily; Kasianova, Alexandra; Kolmykov, Semyon; Yevshin, Ivan; Favorov, Alexander.; Medvedeva, Yulia; Jolma, Arttu; Ko
HOCOMOCO of 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors
database summary
HOCOMOCO of 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors
database summary
HOINVGEN Ingo Paulsen1 and Arndt von Haeseler2,3,4,5
Homologous genes in invertebrate genomes
database summary
Homologous genes in invertebrate genomes
database summary
HOMSTRAD - Homologous Structure Alignment Database
Curated structure-based alignments for protein families
database summary
Curated structure-based alignments for protein families
database summary
HoPaCI-DB Ruepp, Andreas; Bleves, Sophie; Dunger, Irmtraud; Walter, Mathias; Frangoulidis, Dimitrios; Kastenmüller, Gabi; Voulhoux, Romé
The Host-Pathogen Interaction Database of Pseudomonas aeruginosa and Coxiella spp.
database summary
The Host-Pathogen Interaction Database of Pseudomonas aeruginosa and Coxiella spp.
database summary
HORDE - Human Olfactory Receptor Data Exploratorium Olender, T., Glusman, G., Feldmesser, E., Khen, M., Lancet, D.
Olfactory receptor genes and proteins
database summary
Olfactory receptor genes and proteins
database summary
HotSprint
Hot spots (functionally and structurally important residues) in protein interfaces
database summary
Hot spots (functionally and structurally important residues) in protein interfaces
database summary
Housekeeping Transcript Atlas Hounkpe, Bidossessi; Chenou, Francine; de Lima, Franciele; de Paula, Erich
Human and mouse housekeeping genes
database summary
Human and mouse housekeeping genes
database summary
HOWDY Koike, T., Tsurumine, M., Inoue, A., Uchida, N., Iwashima, M., Suzuki, K., Kuroda, M.
Integrated human genomic information
database summary
Integrated human genomic information
database summary
HPMCD Lawley, Trevor; Forster, Samuel; Browne, Hilary; Kumar, Nitin; Hunt, Martin; Denise, Hubert; Mitchell, Alex; Finn, Robert
Human Pan-Microbial Communities Database
database summary
Human Pan-Microbial Communities Database
database summary
HPMR - Human Plasma Membrane Receptome
Plasma membrane protein sequences, literature, and expression database
database summary
Plasma membrane protein sequences, literature, and expression database
database summary
HPRD - Human Protein Reference Database
Domain architecture, post-translational modifications, interaction networks and disease
database summary
Domain architecture, post-translational modifications, interaction networks and disease
database summary
HProteome-BSite Sim, Jiho; Kwon, Sohee; Seok, Chaok
Predicted binding sites and ligands in the human 3D proteome
database summary
Predicted binding sites and ligands in the human 3D proteome
database summary
hPSCreg Kurtz, Andreas; Seltmann, Stefanie; Lekschas, Fritz; Müller, Robert; Stachelscheid, Harald; Bittner, Marie-Sophie; Zhang, Weiping; Kidane, Luam; Seriola, Anna; Veiga, Anna; Stacey, Glyn
Human Pluripotent Stem Cell registry
database summary
Human Pluripotent Stem Cell registry
database summary
HRaP - Database of occurrence of HomoRepeats and Patterns in proteomes Lobanov, M.Yu., Sokolovskiy, I.V. and Galzitskaya, O.V.
HomoRepeats and Patterns
database summary
HomoRepeats and Patterns
database summary
HTCA Li, Xuexin; Pan, Lu; Li, Weiyuan; Liao, Zehuan; Zhang, Xiaolu
Single cell transcriptomes and analytical tools
database summary
Single cell transcriptomes and analytical tools
database summary
HTPSELEX
Transcription factor binding site sequences obtained using high-throughput SELEX method
database summary
Transcription factor binding site sequences obtained using high-throughput SELEX method
database summary
huARdb LLize Wu, Ziwei Xue, Siqian Jin, Jinchun Zhang, Yixin Guo, Yadan Bai, Xuexiao Jin, Chaochen Wang, Lie Wang, Zuozhu Liu, James Q. Wang, Linrong Lu and Wanlu Liu
Human Antigen Receptor Consortium
database summary
Human Antigen Receptor Consortium
database summary
Human Disease Ontology Schriml, Lynn; Munro, James; Schor, Mike; Olley, Dustin; McCracken, Carrie; Felix, Victor; Baron, Allen; Jackson, Rebecca; Bello, Susan; Bearer, Cynthia; Lichenstein, Richard; Bisordi, Katie; Campion, Nicole; Giglio, Michelle; Greene, Carol
The Human Disease Ontology 2022 update
database summary
The Human Disease Ontology 2022 update
database summary
Human OligoGenome Resource Daniel Newburger
Oligonucleotides for targeted resequencing of the human genome
database summary
Oligonucleotides for targeted resequencing of the human genome
database summary
Human Phenotype Ontology Robinson, Peter; Gargano, Michael; Matentzoglu, Nicolas; Coleman, Ben; Toro, Sabrina; Carmody, Leigh; Harris, Nomi; Munoz-Torres, Monica; Danis, Daniel; Mungall, Christopher; Koehler, Sebastian; Haendel, Melissa
Standardized vocabulary of phenotypic abnormalities in human disease
database summary
Standardized vocabulary of phenotypic abnormalities in human disease
database summary
Human Proteinpedia
Community portal for sharing and integration of human proteomic data
database summary
Community portal for sharing and integration of human proteomic data
database summary
Human Proteoform Atlas Kelleher, Neil; Hollas, Michael; Robey, Matthew; Fellers, Ryan; LeDuc, Richard; Thomas, Paul
Human proteoforms
database summary
Human proteoforms
database summary
HumanMetagenomeDB Nunes da Rocha, Ulisses; Kasmanas, Jonas; Bartholomäus, Alexander; Corrêa, Felipe; Tal, Tamara; Jehmlich, Nico; Herberth, Gunda; von Bergen, Martin; Stadler, Peter F.; Carvalho, André C P L F
Curated and standardized metadata for human metagenomes
database summary
Curated and standardized metadata for human metagenomes
database summary
HumanNet Lee, Insuk; Kim, Chan Yeong; Cha, Junha; Yang, Sunmo; Kim, Eiru; Marcotte, Edward; Hart, Traver
HumanNet v3: An improved human functional gene network for disease research
database summary
HumanNet v3: An improved human functional gene network for disease research
database summary
HUSCH Shi, Xiaoying; Yu, Zhiguang; Ren, Pengfei; Ding, Xuanxin; Song, Jiaming; Zhang, Jing; Li, Taiwen; Wang, Chenfei
Human Universal Single Cell Hub
database summary
Human Universal Single Cell Hub
database summary
Hymenoptera Genome Monica C. Munoz-Torres, Justin T. Reese, Christopher P. Childers, Anna K. Bennett, Jaideep P. Sundaram, Kevin L. Childs, Juan M. Anzola, Natalia Milshina, and Christine G. Elsik
Genome sequences and annotation for honey bee Apis mellifera and the parasitoid wasp, Nasonia vitripennis
database summary
Genome sequences and annotation for honey bee Apis mellifera and the parasitoid wasp, Nasonia vitripennis
database summary
HyperCLDB Romano P, Manniello MA, Aresu O, Armento M, Cesaro M, Parodi B.
Hypertext version of the Cell Line Data Base
database summary
Hypertext version of the Cell Line Data Base
database summary
I2D - Interologous Interaction Database Brown K.R.1,2 and Jurisica I.1,2,3
Online Predicted Human Interaction Database
database summary
Online Predicted Human Interaction Database
database summary
i5k Workspace@NAL Poelchau, Monica; Childers, Christopher; Moore, Gary; Tsavatapalli, Vijaya; Evans, Jay; Lee, Chien-Yueh; Lin, Han; Lin, Jun-Wei; Hackett, Kevin
Arthropod genome projects
database summary
Arthropod genome projects
database summary
IAnimal Fu, Yuhua; Liu, Hong; Dou, Jingwen; Wang, Yue; Liao, Yong; Huang, Xin; Tang, Zhenshuang; Xu, Jingya; Yin, Dong; Zhu, Shilin; Liu, Yangfan; Shen, Xiong; Liu, Hengyi; Liu, Jiaqi; Yang, Xin; Zhang, Yi; Xiang, Yue; Li, Jingjin; Zheng, Zhuqing; Zhao, Yunxia; M
Mulit-omics data for 21 animals
database summary
Mulit-omics data for 21 animals
database summary
IARC TP53 Database Olivier, M.1, Hollstein, M.2, Harris, C.C..3, and Hainaut, P.1
Human TP53 somatic and germline mutations
database summary
Human TP53 somatic and germline mutations
database summary
iBeetle-Base Doenitz, Juergen; Schmitt-Engel, Christian; Grossmann, Daniela; Gerischer, Lizzy; Tech, Maike; Schoppmeier, Michael; Klinger, Martin; Bucher, Gregor
Phenotypes of a large scale RNAi screen in the red flour beetle Tribolium castaneum
database summary
Phenotypes of a large scale RNAi screen in the red flour beetle Tribolium castaneum
database summary
iBeetle-Base Doenitz, Juergen; Gerischer, Lizzy; Hahnke, Stefan; Pfeiffer, Stefan; Bucher, Gregor
No description supplied
database summary
No description supplied
database summary
IBIS Panchenko, Anna; Shoemaker, Benjamin; Zhang, Dachuan; Tyagi, Manoj; Thangudu, Ratna; Fong, Jessica; Marchler-Bauer, Aron; Bryant, Steve; Madej, Tom
Inferred Biomolecular Interaction Server: protein-protein, ligand- and nucleic acid-binding sites
database summary
Inferred Biomolecular Interaction Server: protein-protein, ligand- and nucleic acid-binding sites
database summary
IC4R Zhang, Zhang; Hao, Lili; Xia, Lin; Huang, Dawei; Yang, Li; Xu, Xingjian; Yan, Wei; Zhang, Ye; Zou, Dong; Liu, Siqi; Sang, Jian; Deng, Wankun; Wang, Yongbo; Cheng, Han; Ma, Lina; Yuan, Fangfang; Zhong, Jun; Li, Qian; Wu, Shuangyang; He, Zilong; Luo, Yingfeng; Wang, Xin; Ji, Zhaohua; Wang, Xiangfeng; Xue, Yu; Chen, Ling-ling .; Xiao, Jingfa; Zhao, Wen-Ming; Chen, Fei; Zhang, Huiyong; He, Hang; Hu, Songnian
Information Commons for Rice
database summary
Information Commons for Rice
database summary
ICEBERG OU, Hong-Yu; Wang, Meng; Liu, Guitian; Liu, Meng; Tai, Cui; Deng, Zixin1; Song, Jiangning
ICEberg 3.0: functional categorization and analysis of the integrative and conjugative elements in bacteria
database summary
ICEberg 3.0: functional categorization and analysis of the integrative and conjugative elements in bacteria
database summary
ICG Hao, Lili; Sang, Jian; Wang, Zhennan; Li, Man'; Cao, Jiabao; Niu, Guangyi; Xia, Lin; Zou, Dong; Wang, Fan; Xu, Xingjian; Han, Xiaojiao; Fan, Jinqi; Yang, Ye; Zuo, Wanzhu; Zhang, Yang; Zhao, Wen-Ming; Bao, Yi-Ming; Xiao, Jingfa; Hu, Songnian; Zhang, Zhang
No description supplied
database summary
No description supplied
database summary
iCSDB Lee, Sanghyuk; Choi, Ahyoung; Jang, Insu; Han, Heewon; Kim, Min-Seo; Choi, Jinhyuk; Lee, Jieun; Cho, Sung-Yup; Jun, Yukyung; Lee, Charles; Kim, Jaesang; Lee, Byungwook
integrated CRISPR Screens DataBase
database summary
integrated CRISPR Screens DataBase
database summary
IDDB Zhang, Jian; Wu, Jing; Li, Danjun; He, Xinheng; Liu, Xinyi.; Li, Qian '; Li, Xinyi; Wei, Jiale; Li, Mingyu; Rehman, Ashfaq Ur; Wu, Chengwei; Xia, Yujia; Lu, Xuefeng
Infertility Disease DataBase
database summary
Infertility Disease DataBase
database summary
IDEAL Fukuchi, Satoshi; Amemiya, Takayuki; Sakamoto, Shigetaka; Nobe, Yukiko; Hosoda, Kazuo; Kado, Yumiko; Murakami, Seiko; Koike, Ryotaro; Hiroaki, Hidekazu; Ota, Motonori
Intrinsically Disordered proteins with Extensive Annotations and Literature
database summary
Intrinsically Disordered proteins with Extensive Annotations and Literature
database summary
IEAtlas Xu, Juan; Cai, Yangyang; Lv, Dezhong; Li, Donghao; Yin, Jiaqi; Ma, Yingying; Luo, Ya; Fu, Limei; Ding, Na; Li, Yongsheng; Pan, Zhenwei; Li, Xia
HLA-presented immune epitopes from non-coding regions etc
database summary
HLA-presented immune epitopes from non-coding regions etc
database summary
IEDB Vita, Randi; Overton, James; Greenbaum, Jason; Ponomarenko, Julia; Clark, Jason; Cantrell, Jason; Wheeler, Daniel; Gabbard, Joseph; Hix, Deborah; Sette, Alessandro; Peters, Bjoern
Immune Epitope Database: Experimentally characterized B- and T-cell immune response targets
database summary
Immune Epitope Database: Experimentally characterized B- and T-cell immune response targets
database summary
IEDB-3D Julia Ponomarenko 1,2, Nikitas Papangelopoulos 1, Dirk M. Zajonc 3, Bjoern Peters 3,Alessandro Sette 3 and Philip E. Bourne 1,2
Structural data within the Immune Epitope Database
database summary
Structural data within the Immune Epitope Database
database summary
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains Guo, Yaping;Peng, Di;Zhou, Jiaqi;Lin, Shaofeng;Wang, Chenwei;Ning, Wanshan;Xu, Haodong;Deng, Wankun;Xue, Yu
No description supplied
database summary
No description supplied
database summary
IGDD Sanchari Pradhan, Mainak Sengupta, Anirban Dutta, Kausik Bhattacharyya, Sumit K. Bag, Chitra Dutta, and Kunal Ray
Indian Genetic Disease Database
database summary
Indian Genetic Disease Database
database summary
iGNM Yang, Lee-Wei; Li, Hongchun; Chang, Yuan-Yu; Bahar, Ivet
Protein functional motions based on Gaussian Network Model
database summary
Protein functional motions based on Gaussian Network Model
database summary
IGRhCellID Cheng-Kai Shiau, De-Leung Gu, Chian-Feng Chen, Chi-Hung Lin, and Yuh-Shan Jou
Human Cell Lines Identification Resources
database summary
Human Cell Lines Identification Resources
database summary
IGSR Flicek, Paul; Clarke, Laura; Fairley, Susan; Zheng-Bradley, Xiangqun; Streeter, Ian; Perry, Emily,; Lowy, Ernesto; Tassé, Anne-Marie
International Genome Sample Resource
database summary
International Genome Sample Resource
database summary
IID Jurisica, Igor; Kotlyar, Max; Pastrello, Chiara; Ahmed, Zuhaib; Chee, Justin; Varyova, Zofia
IID 2021: towards context-specific protein interaction analyses by increase
database summary
IID 2021: towards context-specific protein interaction analyses by increase
database summary
IKMC Martin Ringwald 1, Vivek Iyer 2, Jeremy C. Mason 1, Kevin R. Stone 1, Hamsa D. Tadepally 1, James A. Kadin 1, Carol J. Bult 1, Janan T. Eppig 1, Darren J. Oakley 2, Sebastien Briois 3, Elia Stupka 4, Vincenza Maselli 4, Damian Smedley 5, Songyan Liu 6,Jens Hansen 7, Richard Baldock 8, Geoff G. Hicks 6 and William C. Skarnes 2
Data and resources from the International Knockout Mouse Consortium
database summary
Data and resources from the International Knockout Mouse Consortium
database summary
IMG Genomes Roux, Simon; Páez-Espino, David; Chen, I-Min A; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Reddy, T.B.K.; Nayfach, Stephen; Schulz, Frederik; Call, Lee; Neches, Russell Y; Woyke, Tanja; Ivanova, Natalia N; Eloe-Fadrosh, Emiley A; Kyrpides Nikos C
Comparative analysis of microbial genomes sequenced at the DOE Joint Genome Institute
database summary
Comparative analysis of microbial genomes sequenced at the DOE Joint Genome Institute
database summary
IMG-ABC Hadjithomas, Michalis; Chen, I-Min; Chu, Ken; Huang, Jinghua; Ratner, Anna; Palaniappan, Krishna; Andersen, Evan; Szeto, Ernest; Markowitz, Victor; Kyrpides, Nikos; Ivanova, Natalia
Atlas of Biosynthetic gene Clusters for secondary metabolites
database summary
Atlas of Biosynthetic gene Clusters for secondary metabolites
database summary
IMG/M Chen, I-Min; Chu, Ken; Palaniappan, Krishna; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan; Varghese, Neha; Seshadri, Rekha; Roux, Simon; Woyke, Tanja; Eloe-Fadrosh, Emiley; Ivanova, Natalia; Kyrpides, Nikos
A data management and analysis system for metagenomes
database summary
A data management and analysis system for metagenomes
database summary
IMG/M Chen, I-Min; Chu, Ken; Palaniappan, Krishna; Ratner, Anna; Huang, Jinghua; Huntemann, Marcel; Hajek, Patrick; Ritter, Stephan; Webb, Cody; Wu, Dongying; Varghese, Neha; Reddy, TBK; Mukherjee, Supratim; Ovchinnikova, Galina; Nolan, Matt; Seshadri, Rekha; R
The IMG/M data management and analysis system v.7: content updates and new
database summary
The IMG/M data management and analysis system v.7: content updates and new
database summary
IMG/PR Camargo, Antonio; Call, Lee; Roux, Simon; Nayfach, Stephen; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Chen, I-Min; Baltrus, David; Castañeda-Barba, Salvador; de la Cruz, Fernando; Funnell, Barbara; Hall, James; Mukhopadhyay, Aindrila; Rocha, Eduardo;
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
database summary
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
database summary
IMG/VR Camargo, Antonio; Nayfach, Stephen; Chen, I-Min; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Ritter, Stephan; Reddy, TBK; Mukherjee, Supratim; Schulz, Frederik; Call, Lee; Neches, Russell; Woyke, Tanja; Ivanova, Natalia; Eloe-Fadrosh, Emiley; Kyrpides,
IMG/VR v4: an expanded database of uncultivated virus genomes within a fram
database summary
IMG/VR v4: an expanded database of uncultivated virus genomes within a fram
database summary
IMG/VR v3 Roux, Simon; Paez-Espino, David; Chen, I-Min; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Reddy, TBK; Nayfach, Stephen; Schulz, Frederik; Call, Lee; Neches, Russell; Ivanova, Natalia; Eloe-Fadrosh, Emiley; Kyrpides, Nikos
Comparative analysis of viral genomes at the DOE Joint Genome Institute
database summary
Comparative analysis of viral genomes at the DOE Joint Genome Institute
database summary
IMGT/3Dstructure-DB Ehrenman, F., Kaas, Q., and Lefranc, M.-P.
Immunoglobulin, T cell receptor, MHC and RPI 3D structures from human and other vertebrate species
database summary
Immunoglobulin, T cell receptor, MHC and RPI 3D structures from human and other vertebrate species
database summary
IMGT/GENE-DB Giudicelli, V., Duroux, P., Ginestoux, C., Bellahcene, F., and Lefranc, M.-P.
Immunoglobulin and T cell receptor genes from human and other vertebrate species
database summary
Immunoglobulin and T cell receptor genes from human and other vertebrate species
database summary
IMGT/LIGM-DB Duroux, P., Giudicelli, V., Jabado-Michaloud, J., Regnier, L., Lefranc, M.-P.
Immunoglobulin and T cell receptor sequences from human and other vertebrate species
database summary
Immunoglobulin and T cell receptor sequences from human and other vertebrate species
database summary
IMGT/mAb-DB Lefranc, Marie-Paule (proxy) (contact); Giudicelli, Véronique; Duroux, Patrice; Michaloud, Joumana; Folch, Géraldine; Aouinti, Safa; Carillon, Emilie; Duvergey, Hugo; Houles, Amélie; Paysan-Lafosse, Typhaine; Saljoqi, Saida; Sasorith, Souphatta; Lefranc, Gérard; Kossida, Sofia
Database for therapeutic monoclonal antibodies
database summary
Database for therapeutic monoclonal antibodies
database summary
IMGT/PRIMER-DB Folch, G., Ehrenman, F. and Lefranc, M.-P.
Immunoglobulin and T cell receptor oligonucleotide sequences from human and other vertebrate species
database summary
Immunoglobulin and T cell receptor oligonucleotide sequences from human and other vertebrate species
database summary
IMGT® databases Kossida, Sofia; Manso, Taciana; Folch, Géraldine; Giudicelli, Véronique; Michaloud, Joumana; Duroux, Patrice; Kushwaha, Anjana; NGUEFACK NGOUNE, Viviane; Georga, Maria; Papadaki, Ariadni; Debbagh, Chahrazed; Pegorier, Perrine; Bertignac, Morgane; Hadi-Sal
IMGT® databases, related tools and web resources through three main axes o
database summary
IMGT® databases, related tools and web resources through three main axes o
database summary
ImmCluster Li, Yongsheng; Jiang, Tiantongfei; Zhou, Weiwei; Sheng, Qi; Yu, Jiaxin; Xie, Yunjin; Ding, Na; zhang, Yunpeng`; Xu, Juan
Immunology cell types in normal and cancer tissues
database summary
Immunology cell types in normal and cancer tissues
database summary
ImmuCo Wang, Pingzhang; Qi, Huiying; Song, Shibin; Li, Shuang; Huang, Ningyu; Han, Wenling; Ma, Dalong
Gene coexpression in immune cells
database summary
Gene coexpression in immune cells
database summary
ImmuNet Dmitriy Gorenshteyn, Elena Zaslavsky, Miguel Fribourg, Christopher Y. Park, Aaron K. Wong, Alicja Tadych, Boris M. Hartmann, Randy A. Albrecht, Adolfo GarcÃÂa-Sastre, Steven H. Kleinstein, Olga G. Troyanskaya, Stuart C. Sealfon
Many functionally important interactions between genes and proteins involve
database summary
Many functionally important interactions between genes and proteins involve
database summary
iModulonDB Palsson, Bernhard; Rychel, Kevin; Decker, Katherine; Sastry, Anand; Phaneuf, Patrick; Poudel, Saugat
"iModulons", groups of independently-modulated genes
database summary
"iModulons", groups of independently-modulated genes
database summary
IMOTA Keller, Andreas; Palmieri, Valeria; Backes, Christina; Ludwig, Nicole; Fehlmann, Tobias; Kern, Fabian; Meese, Eckart
Web repositories for almost all ‘omics’ types have been genera
database summary
Web repositories for almost all ‘omics’ types have been genera
database summary
IMOTdb Pugalenthi G., Bhaduri A. and Sowdhamini R.
Spatially interacting motifs in proteins
database summary
Spatially interacting motifs in proteins
database summary
IMP Chen, Tong (proxy) (contact); Yang, Mei; Cui, Guanghong; Tang, Jinfu; Shen, Ye; Liu, Juan; Yuan, Yuan.'; Guo, Juan; Huang, Lu-Qi
IMP: Bridging the Gap for Medicinal Plant Genomics
database summary
IMP: Bridging the Gap for Medicinal Plant Genomics
database summary
IMPC Koscielny, Gautier; Yaikhom, Gagarine; Iyer, Vivek; Meehan, Terrence; Morgan, Hugh; Atienza-Herrero, Julian; Blake, Andrew; Chen, Chao-Kung; Easty, Richard; Di Fenza, Armida; Fiegel, Tanja; Grifiths, Mark; Horne, Alan; Karp, Natasha; Kurbatova, Natalja; Mason, Jeremy; Matthews, Peter; Oakley, Darren; Qazi, Asfand; Regnart, Jack; Retha, Ahmad; Santos, Luis; Sneddon, Duncan; Warren, Jonathan; Westerberg, Henrik; Wilson, Robert; Melvin, David; Smedley, Damian; Brown, Steve; Flicek, Paul; Skarnes, Bill; Mallon, Ann-Marie; Parkinson, Helen
International Mouse Phenotyping Consortium: an encyclopaedia of mammalian gene function
database summary
International Mouse Phenotyping Consortium: an encyclopaedia of mammalian gene function
database summary
IMPC Groza, Tudor; Lopez Gomez, Federico; Haseli Mashhadi, Hamed; Muñoz-Fuentes, Violeta; Gunes, Osman; Wilson, Robert; Cacheiro, Pilar; Frost, Anthony; Keskivali-Bond, Piia; Vardal, Bora; McCoy, Aaron; Cheng, Tsz Kwan; Santos, Luis; Wells, Sara; Smedley, Dami
The International Mouse Phenotyping Consortium: Comprehensive knockout phen
database summary
The International Mouse Phenotyping Consortium: Comprehensive knockout phen
database summary
Imprinted Gene Catalogue Morison, I.M.1, Glaser, R.2
Imprinted genes and parent-of-origin effects database
database summary
Imprinted genes and parent-of-origin effects database
database summary
iNClusive Öztürk, Mehmet Ali; Icking, Leon-Samuel; Riedlberger, Andreas Martin; Widder, Jonas; Frederiksen, Anne; Stockert, Fabian; Spädt, Michael; Edel, Nikita; Krause, Fabian; Franchini, Selene; Gerstenecker, Johanna; Ranniger, Jeremy; Gescher, Pia; Kaas, Paulina; Salavei, Pavel; Gensch, Nicole; Di Ventura, Barbara; Voigt, Karsten
iNClusive: a database collecting useful information on non-canonical amino acids and their incorporation into proteins
database summary
iNClusive: a database collecting useful information on non-canonical amino acids and their incorporation into proteins
database summary
INDI Krawczyk, Konrad; Deszynski, Piotr; Mlokosiewicz, Jakub; Volanakis, Adam; Jaszczyszyn, Igor; Castellana, Natalie; Bonissone, Stefano; Ganesan, Rajkumar
Integrated Nanobody Database for Immunoinformatics
database summary
Integrated Nanobody Database for Immunoinformatics
database summary
IndiGenomes Scaria, Vinod; Jain, Abhinav; Bhoyar, Rahul; Pandhare, Kavita; Mishra, Anushree; Sharma, Disha; Imran, Mohamed; Senthilvel, Vigneshwar; Divakar, Mohit Kumar; Rophina, Mercy; Jolly, Bani; Batra, Arushi; Sharma, Sumit; Siwach, Sanjay; Jadhao, Arun; Palande,
Genetic variation in 1000 Indian individuals
database summary
Genetic variation in 1000 Indian individuals
database summary
INFEVERS
Hereditary inflammatory disorder and familial mediterranean fever mutation data
database summary
Hereditary inflammatory disorder and familial mediterranean fever mutation data
database summary
Influenza Research Database Scheuermann, Richard; Zhang, Yun; Aevermann, Brian; Anderson, Tavis; Burke, David; Dauphin, Gwenaelle; Gu, Zhiping; He, Sherry; Kumar, Sanjeev; Larsen, Christopher; Lee, Alexandra; Li, Xiaomei; Macken, Catherine; Mahaffey, Colin; Pickett, Brett; Reardon, Brian; Smith, Thomas; Stewart, Lucy; Suloway, Christian; Sun, Guangyu; Tong, Lei; Vincent, Amy; Walters, Bryan; Zaremba, Sam; Zhao, Hongtao; Zhou, Liwei; Zmasek, Christian; Klem, Edward
Influenza Research Database
database summary
Influenza Research Database
database summary
INFRAFRONTIER Meehan, Terrence; Blake, Andrew; Bottomley, Joanne; Chen, Chao-Kung; Castro, Ana; Fessele, Sabine; Fray, Martin; Kenyon, Janet; Koscielny, Gautier; Mallon, Ann-Marie; Massimi, Marzia; Matteoni, Raffaele; Relac, Mike; Steinkamp, Ralph; Wilkinson, Phil; Hrabe de Angelis, Martin; Brown, Steve; Tocchini-Valentini, Glauco; Herault, Yann; Ramirez-Solis, Ramiro; Kollias, George; Ulfhake, Brun; Demengeot, Jocelyne; Fremond, Cecile; Bosch, Fatima; Montoliu, Lluis; Soininen, Raija; Flicek, Paul; Schughart, Klaus; Brakebusch, Cord; Sedlacek, Radislav; Rülicke, Thomas; McKerlie, Colin; Malissen, Bernard; Iraqi, Fuad; Jonkers, Jos; Russig, Holger; Huylebroeck, Danny; Parkinson, Helen; Raess, Michael; Hagn, Michael
European Research Infrastructure for phenotyping and archiving of model mammalian genomes
database summary
European Research Infrastructure for phenotyping and archiving of model mammalian genomes
database summary
Inparanoid Sonnhammer, Erik L.L. (proxy); Östlund, Gabriel
A database of eukaryotic orthologs
database summary
A database of eukaryotic orthologs
database summary
InSatDb Archak S., Meduri E., Sravana Kumar P. and Nagaraju J.
Sequences and properties of insect microsatellites
database summary
Sequences and properties of insect microsatellites
database summary
InsectBase Li, Fei; Mei, Yang; Jing, Dong; Tang, Shenyang; Chen, Xi; Chen, Hao; Duanmu, Haonan; Cong, Yuyang; Chen, Mengyao; Ye, Xinhai; Zhou, Hang; He, Kang
InsectBase 2.0: a comprehensive gene resource for insects
database summary
InsectBase 2.0: a comprehensive gene resource for insects
database summary
InsectBase Li, Fei; Yin, Chuanlin; Shen, Genyu; Guo, Dianhao; Wang, Shuping; Ma, Xingzhou; Xiao, Huamei; Liu, Jinding; Zhang, Zan'.; Liu, Y ing; Zhang, Yiqun; Huang, Shuiqing
Insect genomes and transcriptomes
database summary
Insect genomes and transcriptomes
database summary
IntAct Molecular Interaction Database Noemi del Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit Meldal, Colin Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret Duesbury, Sylvain D. Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwinski, Sandra Orchard, Pablo Porras, Kalpana Panneerselvam and Henning Hermjakob
Protein-protein interaction data
database summary
Protein-protein interaction data
database summary
INTEDE Zhu, Feng; Zhang, Yang; Liu, Xingang; Li, Fengcheng; Yin, Jiayi; Yang, Hao; Li, Xuedong; Liu, Xinyu; Xu, Chai; Niu, Tianle; Zeng, Su; Jia, Qingzhong
INTEDE 2.0: the metabolic roadmap of drugs
database summary
INTEDE 2.0: the metabolic roadmap of drugs
database summary
INTEDE Jiayi Yin, Fengcheng Li, Ying Zhou, Minjie Mou, Yinjing Lu, Kangli Chen, Jia Xue, Yongchao Luo, Jianbo Fu, Xu He, Jianqing Gao, Su Zeng, Lushan Yu, Feng Zhu
Interactome of Drug-Metabolizing Enzymes
database summary
Interactome of Drug-Metabolizing Enzymes
database summary
Integr8 (formerly Proteome Analysis Database) Kersey P.J., Bower L., Horne A.D. and Apweiler R.
Functional classification of proteins in whole genomes
database summary
Functional classification of proteins in whole genomes
database summary
IntEnz Alcántara R.1, Ast V.1, Axelsen K.B.2, Darsow M.1, de Matos P.1, Ennis M.1, Morgat A.2,3 and Degtyarenko K.1
Integrated enzyme database and enzyme nomenclature
database summary
Integrated enzyme database and enzyme nomenclature
database summary
Inter-Chain Beta-Sheets
Protein-protein interactions mediated by interchain beta-sheet formation
database summary
Protein-protein interactions mediated by interchain beta-sheet formation
database summary
Interferome Rusinova, Irina; Yu, Simon; Forster, Sam; Kannan, Anitha; Masse, Marion; Cumming, Helen; Chapman, Ross; Hertzog, Paul
Database of Interferon Regulated Genes
database summary
Database of Interferon Regulated Genes
database summary
International Gene Trap Consortium Database
International mouse Gene Trap Consortium data
database summary
International mouse Gene Trap Consortium data
database summary
International Mouse Phenotyping Consortium Database The International Mouse Phenotyping Consortium
data and procedures for large-scale phenotyping of knockout mouse lines
database summary
data and procedures for large-scale phenotyping of knockout mouse lines
database summary
InterPro Paysan-Lafosse, Typhaine; Blum, Matthias; Chuguransky, Sara; Grego, Tiago; Lázaro Pinto, Beatriz; Salazar, Gustavo; Bileschi, Maxwell L.; Bork, Peer; Bridge, Alan J; Colwell, Lucy; Gough, Julian.; Haft, Daniel; Letunić, Ivica; Marchler-Bauer, Aron; Mi, Hu
InterPro in 2022
database summary
InterPro in 2022
database summary
InterPro Bateman, Alex; Blum, Matthias; Chang, Hsin-Yu; Chuguransky, Sara; Grego, Tiago; Kandasaamy, Swaathi; Mitchell, Alex; Nuka, Gift; Paysan-Lafosse, Typhaine; Qureshi, Matloob; Raj, Shriya; Richardson, Lorna; Salazar, Gustavo; Williams, Lowri; Bork, Peer; Bridge, Alan J; Gough, Julian.; Haft, Daniel; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu'; Natale, Darren; Necci, Marco; Orengo, Christine; Pandurangan, Arun Prasad; Rivoire, Catherine; Sigrist, Christian; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul; Tosatto, Silvio; Wu, Cathy; Finn, Robert
Integrated resource of protein families, domains and functional sites
database summary
Integrated resource of protein families, domains and functional sites
database summary
InterRNA Firdaus Raih, Mohd; Appasamy, Sri; Yusof Hamdani, Hazrina; Ramlan, Effirul
Base interactions in RNA structures
database summary
Base interactions in RNA structures
database summary
IntroVerse Garcia-Ruiz, Sonia; Gustavsson, Emil; Zhang, David; Reynolds, Regina; Chen, Zhongbo; Fairbrother-Browne, Aine; Gil-MartÃnez, Ana Luisa; BotÃa, Juan; Collado-Torres, Leonardo; Ryten, Mina
Introns and splicing errors/noise
database summary
Introns and splicing errors/noise
database summary
InvFEST Cáceres, Mario; MartÃÂnez-Fundichely, Alexander; Casillas, Sònia; Egea, Raquel; Ràmia, Miquel; Barbadilla, Antonio; Puig, Marta
Polymorphic inversions in the human genome
database summary
Polymorphic inversions in the human genome
database summary
ipaQTL Li, Lei; Ma, Xuelian; Cheng, Shumin; Ding, Ruofan; Zhao, Zhaozhao; Zou, Xudong; Guang, Shouhong; Wang, Qixuan; Yu, Chen; Ni, Ting
Intronic polyadenylation quantitative trait loci
database summary
Intronic polyadenylation quantitative trait loci
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iPAVS Pradeep Kumar Sreenivasaiah
Integrated Pathway Analysis and Visualization System
database summary
Integrated Pathway Analysis and Visualization System
database summary
IPD - Immuno Polymorphism Database Marsh, Steven; Robinson, James; Halliwell, Jason; Hayhurst, James; Flicek, Paul; Parham, Peter
The Immuno-Polymorphism Database
database summary
The Immuno-Polymorphism Database
database summary
IPD-ESTDAB Robinson J., Waller M.J., Marsh S.G.E.
Immunologically characterised melanoma cell lines
database summary
Immunologically characterised melanoma cell lines
database summary
IPD-HPA - Human Platelet Antigens Robinson J., Waller M.J., Marsh S.G.E.
Immuno polymorphism of human platelet antigens
database summary
Immuno polymorphism of human platelet antigens
database summary
IPD-IMGT/HLA Robinson, James; Barker, Dominic; Maccari, Giuseppe; Georgiou, Xenia; Cooper, Michael; Flicek, Paul; Marsh, Steven
The IPD-IMGT/HLA Database
database summary
The IPD-IMGT/HLA Database
database summary
IPD-KIR - Killer-cell Immunoglobulin-like Receptors Robinson J., Waller M.J., Marsh S.G.E.
Immuno polymorphism of killer-cell Ig-like receptors
database summary
Immuno polymorphism of killer-cell Ig-like receptors
database summary
IPD-MHC Robinson J., Waller M.J., Marsh S.G.E.
Sequences of the major histocompatibility complex
database summary
Sequences of the major histocompatibility complex
database summary
iPfam Finn, Robert; Miller, Benjamin; Clements, Jody; Bateman, Alex
A database of Pfam domain interactions
database summary
A database of Pfam domain interactions
database summary
IPI - International Protein Index Kersey, P.J., Duarte, J., Apweiler, R.
Non-redundant sets of human, mouse and rat proteins
database summary
Non-redundant sets of human, mouse and rat proteins
database summary
iPPI-DB Sperandio, Olivier; Labbé, Céline; Kuenemann, Mélaine; Zarzycka, Barbara; Vriend, Gert; Nicolaes, Gerry; Lagorce, David; Miteva, Maria; Villoutreix, Bruno
Inhibitors of protein-protein interactions
database summary
Inhibitors of protein-protein interactions
database summary
iProClass Wu, C.H.1, Huang, H.1, Chen, Y.2, Barker, W.C.2
Annotated protein database with family, function, and structure information
database summary
Annotated protein database with family, function, and structure information
database summary
iProLINK Hu Z.Z. and Wu C.H.
Annotated literature sources for protein features and names
database summary
Annotated literature sources for protein features and names
database summary
iProX Zhu, Yunping; Chen, Tao ,; Ma, Jie; Liu, Yi; Chen, Zhiguang; Xiao, Nong; Lu, Yutong; Fu, Yinjin; Yang, Chunyuan; Li, Mansheng; Wu, Songfeng; Wang, Xue; Li, Dongsheng; He, Fuchu; Hermjakob, Henning
iProX in 2021: Connecting proteomics data sharing with big data
database summary
iProX in 2021: Connecting proteomics data sharing with big data
database summary
iPTMnet Huang, Hongzhan; Arighi, Cecilia; Ross, Karen; Ren, Jia; Li, Gang; Chen, Sheng-Chih; Cowart, Julie; Wang, Qinghua.; Vijay-Shanker, K; Wu, Cathy
No description supplied
database summary
No description supplied
database summary
IRESite Mokrejs M.1,2, Vopalensky V.1, Kolenaty O.1, Masek T.1, Feketova Z.1, Sekyrova P.3, Skaloudova B.1, Kriz V.4 and Pospisek M.1,5
Experimentally studied internal ribosome entry sites
database summary
Experimentally studied internal ribosome entry sites
database summary
ISED Yang, I.S.1,2, Lee, J.-L.2, Lee, J.S.1, Mitchell, W.P.3,4, Oh, H.-B.2, Kang, C.2, and Kim, K.H.1
Influenza virus Sequence and Epitope Database
database summary
Influenza virus Sequence and Epitope Database
database summary
Isfinder Siguier P.1, Perochon J.1, Lestrade L.1, Mahillon J.2 and Chandler M.1
A database of bacterial Insertion Sequences
database summary
A database of bacterial Insertion Sequences
database summary
Isobase Daniel Park, Rohit Singh, Michael Baym, Chung-Shou Liao, and Bonnie Berger
IsoRank PPI Network Alignment Based Ortholog Database
database summary
IsoRank PPI Network Alignment Based Ortholog Database
database summary
isomiRdb Aparicio-Puerta, Ernesto; Hirsch, Pascal; Schmartz, Georges; Fehlmann, Tobias; Keller, Verena; Engel, Annika; Kern, Fabian; Hackenberg, Michael; Keller, Andreas
microRNA isoform expression
database summary
microRNA isoform expression
database summary
iSyTE Lachke, Salil; kakrana, Atul; Yang, Andrian; Anand, Deepti; Djordjevic, Djordje; Ramachandruni, Deepti; Singh, Abhyudai; Huang, Hongzhan; Ho, Joshua
No description supplied
database summary
No description supplied
database summary
ITSoneDB Pesole, Graziano; Santamaria, Monica; Fosso, Bruno; Licciulli, Vito Flavio; Balech, Bachir; Larini, Italia; Grillo, Giorgio; De Caro, Giorgio; Liuni, Sabino
No description supplied
database summary
No description supplied
database summary
ITTACA Elfilali A.1,2, Lair S.1,2, Verbeke C.1,2, La Rosa P.1, Radvanyi F.2 and Barillot E.1,2
Microarray gene expression and clinical data on tumors
database summary
Microarray gene expression and clinical data on tumors
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IUBMB Nomenclature database Gerard P. Moss
Nomenclature of enzymes, membrane transporters, electron transport proteins and other proteins
database summary
Nomenclature of enzymes, membrane transporters, electron transport proteins and other proteins
database summary
IUPAC Nomenclature database Gerard P. Moss
Nomenclature of biochemical and organic compounds approved by the IUBMB-IUPAC Joint Commission
database summary
Nomenclature of biochemical and organic compounds approved by the IUBMB-IUPAC Joint Commission
database summary
IUPHAR/BPS Guide to Pharmacology Davies, Jamie; Harding, Simon; Sharman, Joanna; Faccenda, Elena; Pawson, Adam; Southan, Christopher; Ireland, Sam; Gray, Alasdair; Bruce, Liam; Alexander, Stephen PH; Anderton, Steve; Bryant, Clare; Davenport, Anthony; doerig, christian; Fabbro, Doriano; Levi-Schaffer, Francesca; Spedding, Michael
The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, www.guidetopharmacology.org)
database summary
The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, www.guidetopharmacology.org)
database summary
IUPHAR/BPS Guide to Pharmacology Harding, Simon; Armstrong, Jane; Faccenda, Elena; Southan, Christopher; Alexander, Stephen PH; Davenport, Anthony; Pawson, Adam; Spedding, Michael; Davies, Jamie
The IUPHAR/BPS Guide to PHARMACOLOGY in 2022: curating pharmacology for COV
database summary
The IUPHAR/BPS Guide to PHARMACOLOGY in 2022: curating pharmacology for COV
database summary
IUPHAR/BPS Guide to Pharmacology Harding, Simon D; Sharman, Joanna L; Faccenda, Elena; Southan, Christopher; Pawson, Adam J; Ireland, Sam; Gray, Alasdair JG; Bruce, Liam; Alexander, Stephen PH; Anderton, Stephen; Bryant, Claire; Davenport, Anthony P; Doerig, Christian; Fabbro, Doriano; Levi-Schaffer, Francesca; Spedding, Michael; Davies, Jamie A
Properties of established and potential drug targets: GPCRs, ion channels, nuclear hormone receptors, catalytic receptors, transporters and enzymes
database summary
Properties of established and potential drug targets: GPCRs, ion channels, nuclear hormone receptors, catalytic receptors, transporters and enzymes
database summary
iUUCD Xue, Yu; Zhou, Jiaqi; Xu, Yang ,; Lin, Shaofeng; Guo, Yaping; Deng, Wankun; Zhang, Ying.; Guo, Anyuan
The ubiquitin and ubiquitin-like (Ub/Ubl) conjugation is one of the most im
database summary
The ubiquitin and ubiquitin-like (Ub/Ubl) conjugation is one of the most im
database summary
IVDB - Influenza Virus Database Chang S.1,2, Zhang J.1, Liao X.1, Zhu X.1,3, Wang D.1, Zhu J.1, Feng T.1, Yang H.1, Yu J.1 and Wang J.1
Annotated sequences and geographic distribution of the influenza virus
database summary
Annotated sequences and geographic distribution of the influenza virus
database summary
JASPAR Mathelier, Anthony; Castro-Mondragon, Jaime; Riudavets Puig, Rafael; Rauluseviciute, Ieva; Berhanu Lemma, Roza; Turchi, Laura; Blanc Mathieu, Romain; LUCAS, Jeremy; Boddie, Paul; Khan, Aziz; Manosalva Perez, Nicolas; Fornes, Oriol; Leung, Tiffany; Aguirre
JASPAR 2022: the 9th release of the open-access database of transcription f
database summary
JASPAR 2022: the 9th release of the open-access database of transcription f
database summary
JASPAR Mathelier, Anthony; Rauluseviciute, Ieva; Riudavets Puig, Rafael; Blanc Mathieu, Romain; Castro-Mondragon, Jaime; Ferenc, Katalin; Kumar, Vipin; Berhanu Lemma, Roza; LUCAS, Jeremy; Chèneby, Jeanne; Baranasic, Damir; Khan, Aziz; Fornes, Oriol; Gundersen, S
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
database summary
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
database summary
JASPAR Fornes, Oriol;Castro-Mondragon, Jaime A;Khan, Aziz;van der Lee, Robin;Zhang, Xi;Richmond, Phillip A;Modi, Bhavi P;Correard, Solenne;Gheorghe, Marius;Baranašić, Damir;Santana-Garcia, Walter;Tan, Ge;Chèneby, Jeanne;Ballester, Benoit;Parcy, François;Sandelin, Albin;Lenhard, Boris;Wasserman, Wyeth W;Mathelier, Anthony
No description supplied
database summary
No description supplied
database summary
JASPAR Mathelier, Anthony; Khan, Aziz; Fornes, Oriol; Stigliani, Arnaud; Gheorghe, Marius; Castro-Mondragón, Jaime; van der Lee, Robin; Bessy, Adrien; Chèneby, Jeanne; Kulkarni, Shubhada; Tan, Ge,; Baranasic, Damir; Arenillas, David; Sandelin, Albin; Vandepoele, Klaas; Lenhard, Boris; Ballester, Benoit; Wasserman, Wyeth; Parcy, François
JASPAR (http://jaspar.genereg.net) is an open-access database of curated, n
database summary
JASPAR (http://jaspar.genereg.net) is an open-access database of curated, n
database summary
Jenalib: Jena Library of Biological Macromolecules Reichert, J., Suehnel, J.
Visualization and analysis of 3D biopolymer structures
database summary
Visualization and analysis of 3D biopolymer structures
database summary
JET2 Viewer Ripoche, Hugues,; Laine, Elodie; Ceres, Nicoletta; Carbone, Alessandra
Joint Evolutionary Trees: Protein-protein interaction patches in known structures
database summary
Joint Evolutionary Trees: Protein-protein interaction patches in known structures
database summary
jMorp Kinoshita, Kengo; Tadaka, Shu; Kawashima, Junko; Hishinuma, Eiji; Saito, Sakae; Okamura, Yasunobu; Otsuki, Akihito; Kojima, Kaname; Komaki, Shohei; Aoki, Yuichi; Kanno, Takanari; Saigusa, Daisuke; Inoue, Jin; Shirota, Matsuyuki; Takayama, Jun; Katsuoka, Fumiki; Shimizu, Atsushi; Tamiya, Gen; Shimizu, Ritsuko; Hiratsuka, Masahiro; Motoike, Ikuko; Koshiba, Seizo; Sasaki, Makoto; Yamamoto, Masayuki,
jMorp: Japanese Multi-Omics Reference Panel update report 2023
database summary
jMorp: Japanese Multi-Omics Reference Panel update report 2023
database summary
JMorp Kinoshita, Kengo; Tadaka, Shu; Hishinuma, Eiji; Komaki, Shohei; Motoike, Ikuko; Kawashima, Junko; Saigusa, Daisuke; Inoue, Jin; Takayama, Jun; Okamura, Yasunobu; Aoki, Yuichi; Shirota, Matsuyuki; Otsuki, Akihito; Katsuoka, Fumiki; Shimizu, Atsushi; Tamiya
Japanese Multi Omics Reference Panel
database summary
Japanese Multi Omics Reference Panel
database summary
jPOSTrepo Okuda, Shujiro; Watanabe, Yu; Moriya, Yuki.; Kawano, Shin; Yamamoto, Tadashi; Matsumoto, Masaki; Takami, Tomoyo; Kobayashi, Daiki; Araki, Norie; Yoshizawa, Akiyasu.; Tabata, Tsuyoshi; Sugiyama, Naoyuki; Goto, Susumu; Ishihama, Yasushi
Japanese ProteOme Standard repository
database summary
Japanese ProteOme Standard repository
database summary
KBDOCK Ritchie, David; Ghoorah, Anisah; Devignes, Marie-Dominique; Smail-Tabbone, Malika
Protein domain interactions and interfaces
database summary
Protein domain interactions and interfaces
database summary
KBERG Tang S.1, Zhang Z.1, Tan S.L.1, Tang M.-H.E.1, Kumar A.P.1, Ramadoss S.K.1, and Bajic V.B.2
KnowledgeBase for Estrogen Responsive Genes
database summary
KnowledgeBase for Estrogen Responsive Genes
database summary
KEGG Kanehisa, Minoru; Furumichi, Miho; Sato, Yoko,; Kawashima, Masayuki; Ishiguro-Watanabe, Mari
Kyoto encyclopedia of genes and genomes: databases on genes, proteins, and metabolic pathways
database summary
Kyoto encyclopedia of genes and genomes: databases on genes, proteins, and metabolic pathways
database summary
KERIS xiao, wenzhong; Li, Peng .; Tompkins, Ronald
Kaleidoscope of gEne Responses to Inflammation among Species
database summary
Kaleidoscope of gEne Responses to Inflammation among Species
database summary
KinaMetrix: a web resource to investigate kinase conformations and inhibitor space Rahman, Rayees;Ung, Peter Man-Un;Schlessinger, Avner
No description supplied
database summary
No description supplied
database summary
KinaseMD Zhao, Zhongming; Hu, Ruifeng; Xu, Haodong; Jia, Peilin
Kinase Mutations and Drug responses
database summary
Kinase Mutations and Drug responses
database summary
Kincore Dunbrack, Roland; Modi, Vivek
Protein kinase sequence, structure and phylogeny
database summary
Protein kinase sequence, structure and phylogeny
database summary
KineticDB Bogatyreva, N.S.1, Osypov, A.A.2, Ivankov, D.N.1
Kinetic data on folding of single-domain globular proteins
database summary
Kinetic data on folding of single-domain globular proteins
database summary
KinG: Kinases in Genomes Malini Manoharan 1, Priyanka Sharma2, Chintalapati Janaki 1,2 , Shashi Shekhar2, Narayanaswamy Srinivasan1, Ramaswamy Rakshambikai1
KinG: Kinases in Genomes is a comprehensive collection of Ser/Thr/Tyr specific protein kinases and similar sequences encoded in the completed genomes of eukaryotes and prokaryotes. This site provides a detailed classification based on sequence similarity between catalytic domains of protein kinases.
database summary
KinG: Kinases in Genomes is a comprehensive collection of Ser/Thr/Tyr specific protein kinases and similar sequences encoded in the completed genomes of eukaryotes and prokaryotes. This site provides a detailed classification based on sequence similarity between catalytic domains of protein kinases.
database summary
KnockTF Li, Chunquan; Feng, Chenchen; Song, Chao; Song, Shuang; Zhang, Guorui; Yin, Mingxue; Zhang, Yue-Xin; Qian, Feng-Cui; Wang, Qiuyu; Guo, Maozu
KnockTF 2.0: a comprehensive gene expression profile database with knockdown/knockout of transcription (co-)factors in multi-species
database summary
KnockTF 2.0: a comprehensive gene expression profile database with knockdown/knockout of transcription (co-)factors in multi-species
database summary
KnockTF Feng, Chenchen;Song, Chao;Liu, Yuejuan;Qian, Fengcui;Gao, Yu;Ning, Ziyu;Wang, Qiuyu;Jiang, Yong;Li, Yanyu;Li, Meng;Chen, Jiaxin;Zhang, Jian;Li, Chunquan
Transcription factors (TFs) and their target genes have important functions
database summary
Transcription factors (TFs) and their target genes have important functions
database summary
KnotProt Sulkowska, Joanna; Jamroz, Michal; Niemyska, Wanda; Rawdon, Eric; Stasiak, Andrzej; Millett, Kenneth; Sułkowski, Piotr
Proteins with Topological knots and slipknots
database summary
Proteins with Topological knots and slipknots
database summary
KnotProt 2.0: a database of proteins with knots and other entangled structures Dabrowski-Tumanski, Pawel;Rubach, Pawel;Goundaroulis, Dimos;Dorier, Julien;Sułkowski, Piotr;Millett, Kenneth C;Rawdon, Eric J;Stasiak, Andrzej;Sulkowska, Joanna I
No description supplied
database summary
No description supplied
database summary
KNOTTIN Gelly, Jean-Christophe; Postic, Guillaume; Gracy, Jérôme; Périn, Charlotte; Chiche, Laurent
No description supplied
database summary
No description supplied
database summary
Knottin database
Database of knottins - small proteins with an unusual "disulfide through disulfide" knot
database summary
Database of knottins - small proteins with an unusual "disulfide through disulfide" knot
database summary
KUPS Xue-wen Chen 1,2, Jong Cheol Jeong 2 and Patrick Dermyer 2
Interacting and non-interacting protein pairs
database summary
Interacting and non-interacting protein pairs
database summary
Laminin Database Daiane C. F. Golbert, Leandra Linhares-Lacerda, Luiz G. Almeida, Eliane Correa-de-Santana, Alice R. de Oliveira, Alex S. Mundstein, Wilson Savino and Ana T. R. de Vasconcelos
Laminin Database
database summary
Laminin Database
database summary
LAMP Achchuthan Shanmugasundram1,2,*, Faviel F Gonzalez-Galarza1, Jonathan Wastling2, Olga Vasieva1 and Andrew R Jones1
Library of Apicomplexan Metabolic Pathways (LAMP): A manually curated database for metabolic pathways of apicomplexan parasites
database summary
Library of Apicomplexan Metabolic Pathways (LAMP): A manually curated database for metabolic pathways of apicomplexan parasites
database summary
Leaf Senescence Database Luo, Jingchu; Li, Zhonghai; Zhao, Yi.; Liu, Xiaochun; Peng, Junying; Guo, Hongwei
Leaf Senescence Database
database summary
Leaf Senescence Database
database summary
LEGER Dieterich G., KÄrst U., Fischer E., Wehland J. and JÄnsch L.
Comparative genomics of pathogenic and non-pathogenic Listeria spp.
database summary
Comparative genomics of pathogenic and non-pathogenic Listeria spp.
database summary
LegumelIP Zhao, Patrick; Dai, Xinbin; Zhuang, Zhaohong; Boschiero, Clarissa; Dong, Yibo
Model Legumes Integrative database Platform
database summary
Model Legumes Integrative database Platform
database summary
LenVarDB Sowdhamini, Ramanathan; Mutt, Eshita; Mathew, Oommen
Database of length variantion in protein domains
database summary
Database of length variantion in protein domains
database summary
LeptoList Cédric Cabau1, Virginie Cubas1, Gang Fang1,3, Christine Ho1, Zhou Yu1, Ivan Moszer2,3, Antoine Danchin1,3
Leptospira interrogans genome database
database summary
Leptospira interrogans genome database
database summary
LIFEdb Mehrle A.1, Rosenfelder H.1, Schupp I.1, del Val C.2, Arlt D.1, Hahne F. 1, Bechtel S. 1, Simpson J.3, Hofman O.4, Winston Hide W.1, Glatting K.-H.2, Huber W.5, Pepperkok R.4, Poustka A.1 and Wiemann S.1
A database on localization, interaction, functional assays and expression of human proteins
database summary
A database on localization, interaction, functional assays and expression of human proteins
database summary
LINCS Data Portal Schurer, Stephan; Koleti, Amar; Terryn, Raymond; Stathias, Vasileios; Chung, Caty; Cooper, Daniel; Turner, John; Vidovic, Dušica; Forlin, Michele; Kelley, Tanya; D’Urso, Alessandro; Allen, Bryce; Torre, Denis; Jagodnik, Kathleen; Wang, Lily; Jenkins, Sherry; Mader, Christopher; Niu, Wen; Fazel, Mehdi; Mahi, Naim; Pilarczyk, Marcin; Clark, Nicholas; Shamsaei, Behrouz; Meller, Jarek; Vasiliauskas, Juozas; Reichard, John; Medvedovic, Mario; Ma'ayan, Avi; Pillai, Ajay
No description supplied
database summary
No description supplied
database summary
LincSNP Ning, Shangwei; Gao, Yue; Li, Xin,; Shang, Shipeng; Guo, Shuang; Sun, Dailin; Gan, Jing; Sun, Jie; Zhang, Yakun; Wang, Junwei; Wang, Xinyue; Li, Xia; Zhang, Yunpeng
Association of human lncRNAs with disease-related SNPs
database summary
Association of human lncRNAs with disease-related SNPs
database summary
Lineage Landscape Liu, Guang-Hui (proxy) (contact); Yan, Haoteng; Wang, Ronghao; Ma, Shuai; Huang, Daoran; Wang, Si; REN, JIE; ZHANG, WEIQI; qu, jing; Zhou, Yuanchun
Omics of lineage determination in animals
database summary
Omics of lineage determination in animals
database summary
LinkedOmics Zhang, Bing; Vasaikar, Suhas; Straub, Peter; Wang, Jing,,
No description supplied
database summary
No description supplied
database summary
LinkProt Sulkowska, Joanna; Dabrowski-Tumanski, Pawel; Jarmolinska, Aleksandra; Niemyska, Wanda; Rawdon, Eric; Millett, Kenneth
Topologically non-trivial protein structures made by single, double, or triple chains
database summary
Topologically non-trivial protein structures made by single, double, or triple chains
database summary
Lipase Engineering Database Fischer, M., Pleiss, J.
Integrated information on sequence, structure, and function of lipases and esterases
database summary
Integrated information on sequence, structure, and function of lipases and esterases
database summary
LIPID MAPS Conroy, Matthew; Andrews, Robert; Andrews, Simon; Cockayne, Lauren; Dennis, Edward; Fahy, Eoin; Gaud, Caroline; Griffiths, William; Jukes, George; Kolchin, Maksim; Mendivelso, Karla; Lopez, Andrea; Ready, Caroline; Subramaniam, Shankar; O'Donnell, Valerie
LIPID MAPS: Update to databases and tools for the lipidomics community.
database summary
LIPID MAPS: Update to databases and tools for the lipidomics community.
database summary
Lipid MAPS Cotter D.1, Maer A.1, Guda C.2, Saunders B.1, and Subramaniam S.1,3
Lipid-associated proteins
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Lipid-associated proteins
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liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies Aparicio-Puerta, Ernesto;Jáspez, David;Lebrón, Ricardo;Koppers-Lalic, Danijela;Marchal, Juan A;Hackenberg, Michael
No description supplied
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No description supplied
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LIRBase Jia, Lihua; Li, Yang; Huang, Fangfang; Jiang, Yingru; Li, Haoran; Wang, Zhizhan; Chen, Tiantian; Li, Jiaming; Zhang, Zhang; Yao, Wen
National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China; China National Center for Bioinformation, Beijing 100101, China; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100101, China
yaowen@henau.edu.cn
Long Inverted Repeats in eukaryotes
LIRBase is a specialized database of 6,619,473 long inverted repeats (LIRs) identified in 424 eukaryotic genomes, including 297,317 LIRs in 77 invertebrate metazoa genomes, 1,731,978 LIRs in 139 plant genomes, and 4,590,178 LIRs in 208 vertebrate genomes. Long inverted repeats (LIRs) can be transcribed into long hairpin RNAs (hpRNAs), which can further be processed into small interfering RNAs (siRNAs) with vital biological roles. LIRBase not only allows users to browse and search the identified LIRs in any eukaryotic genome(s) of interest available in GenBank, but also provides friendly web functionalities to facilitate users to identify LIRs in user-uploaded sequences, align sRNA sequencing data to LIRs, perform differential expression analysis of LIRs, predict mRNA targets for LIR-derived siRNAs, and visualize the secondary structure of candidate long hpRNAs encoded by LIRs. LIRBase bears the great utility for systematic investigation and characterization of LIRs and functional exploration of potential roles of LIRs and their derived siRNAs in diverse species.
Long Inverted Repeats in eukaryotes
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Long Inverted Repeats in eukaryotes
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LitCovid Chen, Qingyu; Allot, Alexis; Leaman, Robert; Wei, Chih- Hsuan; Aghaarabi, Elaheh; Guerrerio, John; Xu, Lilly; Lu, Zhiyong
LitCovid in 2022: an information resource for the COVID-19 literature
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LitCovid in 2022: an information resource for the COVID-19 literature
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LLPSDB: a database of proteins undergoing liquid–liquid phase separation in vitro Li, Qian;Peng, Xiaojun;Li, Yuanqing;Tang, Wenqin;Zhu, Jia’an;Huang, Jing;Qi, Yifei;Zhang, Zhuqing
No description supplied
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No description supplied
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lnc2cancer Li, Xia; Gao, Yue; Shang, Shipeng; Guo, Shuang; Li, Xin,; Zhou, Hanxiao; Liu, Hongjia; Sun, Yue; Wang, Junwei; Wang, Peng; Zhi, Hui'; Ning, Shangwei; Zhang, Yunpeng
Lnc2Cancer 3.0 includes comprehensive data on experimentally supported long
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Lnc2Cancer 3.0 includes comprehensive data on experimentally supported long
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Lnc2Meth Li, Xia; Zhi, Hui'; Li, Xin,; Wang, Peng,.; Gao, Yue'; Gao, Baoqing; Zhou, Dianshuang; Zhang, Yan *; Guo, Maoni; Yue, Ming; Shen, Weitao; Ning, Shangwei; Jin, Lianhong
No description supplied
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No description supplied
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LncACTdb Li, Xia; Wang, Peng; Guo, Qiuyan.; Qi, Yue; Hao, Yangyang2; Gao, Yue; Zhi, Hui; Zhang, Yuanfu; Sun, Yue; Zhang, Yakun; Xin, Mengyu; zhang, Yunpeng`; Ning, Shangwei
LncACTdb 3.0: an updated database of experimentally supported ceRNA interac
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LncACTdb 3.0: an updated database of experimentally supported ceRNA interac
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LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments Wang, Peng;Li, Xin;Gao, Yue;Guo, Qiuyan;Wang, Yanxia;Fang, Ying;Ma, Xueyan;Zhi, Hui;Zhou, Dianshuang;Shen, Weitao;Liu, Weisha;Wang, Lihua;Zhang, Yunpeng;Ning, Shangwei;Li, Xia
No description supplied
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No description supplied
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LncBook Li, Zhao; Liu, Lin; Feng, Changrui; Qin, Yuxin; Xiao, Jingfa,; Zhang, Zhang; Ma, Lina
LncBook 2.0: integrating human long non-coding RNAs with multi-omics annota
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LncBook 2.0: integrating human long non-coding RNAs with multi-omics annota
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LncBook: a curated knowledgebase of human long non-coding RNAs Ma, Lina;Cao, Jiabao;Liu, Lin;Du, Qiang;Li, Zhao;Zou, Dong;Bajic, Vladimir B;Zhang, Zhang
No description supplied
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No description supplied
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LnCeCell Li, Xia; Wang, Peng; Guo, Qiuyan.; Hao, Yangyang; Liu, Qian; Gao, Yue'; Zhi, Hui'; Li, Xin,; Shang, Shipeng; Guo, Shuang; zhang, Yunpeng`; Ning, Shangwei
lncRNA-associated ceRNA networks
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lncRNA-associated ceRNA networks
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LNCediting Gong, Jing; Liu, Chun-Jie; Liu, Wei; Xiang, Yu; Diao, Lixia; Guo, An-Yuan; Han, Leng
RNA editing sites in lncRNAs from human, monkey, mouse and fly
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RNA editing sites in lncRNAs from human, monkey, mouse and fly
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LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation Wang, Peng;Li, Xin;Gao, Yue;Guo, Qiuyan;Ning, Shangwei;Zhang, Yunpeng;Shang, Shipeng;Wang, Junwei;Wang, Yanxia;Zhi, Hui;Fang, Ying;Shen, Weitao;Zhang, Guangmei;Chen, Steven Xi;Li, Xia
No description supplied
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No description supplied
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LncExpDB Ma, Lina; Li, Zhao; Liu, Lin; Jiang, Shuai; Li, Qianpeng; Feng, Changrui; Du, Qiang; Zou, Dong; Xiao, Jingfa; Zhang, Zhang
Human lncRNA expression database
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Human lncRNA expression database
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LNCipedia Mestdagh, Pieter; Volders, Pieter-Jan; Verheggen, Kenneth; Menschaert, Gerben; Vandepoele, Klaas; Martens, Lennart; Vandesompele, Jo
Human lncRNA gene sequences and structures
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Human lncRNA gene sequences and structures
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LNCipedia 5: towards a reference set of human long non-coding RNAs Volders, Pieter-Jan;Anckaert, Jasper;Verheggen, Kenneth;Nuytens, Justine;Martens, Lennart;Mestdagh, Pieter;Vandesompele, Jo
No description supplied
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No description supplied
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LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse Cheng, Liang;Wang, Pingping;Tian, Rui;Wang, Song;Guo, Qinghua;Luo, Meng;Zhou, Wenyang;Liu, Guiyou;Jiang, Huijie;Jiang, Qinghua
No description supplied
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No description supplied
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lncRNAdb Quek, Xiu Cheng; Thomson, Daniel; Maag, Jesper; Gloss, Brian; Bartonicek, Nenad; Signal, Bethany; Clark, Michael; Dinger, Marcel
Long Non-Coding RNA Database
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Long Non-Coding RNA Database
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LncRNADisease Geng Chen1,2,3#, Ziyun Wang2#, Dongqing Wang2#, Chengxiang Qiu2, Mingxi Liu4, Xing Chen4, Qipeng Zhang2, Guiying Yan4*, and Qinghua Cui1,2,3*
LncRNADisease: a database for long noncoding RNA associated diseases
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LncRNADisease: a database for long noncoding RNA associated diseases
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lncRNAfunc Zhou, Xiaobo; Yang, Mengyuan; Lu, Huifen; Liu, Jiajia; Wu, Sijia; Kim, Pora
Regulatory roles of lncRNAs in cancer
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Regulatory roles of lncRNAs in cancer
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lncRNASNP Guo, An-Yuan; Gong, Jing; Liu, Wei.; Zhang, Jiayou; Miao, Xiaoping
SNPs in human lncRNAs
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SNPs in human lncRNAs
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lncRNASNP Gong, Jing; Yang, Yanbo; Wang, Dongyang; Miao, Ya-Ru; Wu, Xiaohong; Luo, Haohui; Cao, Wen; Yang, Wenqian; Yang, Jianye; Guo, Anyuan
lncRNASNP v3: an updated database for functional variants in long non-codin
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lncRNASNP v3: an updated database for functional variants in long non-codin
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lncRNASNP2 Guo, An-Yuan; Miao, Yaru; Liu, Wei.; Zhang, Qiong
No description supplied
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No description supplied
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LncRNAWiki Ma, Lina; Liu, Lin; Li, Zhao; Liu, Chang; Zou, Dong; Li, Qianpeng; Feng, Changrui; Jing, Wei; Luo, Sicheng; Zhang, Zhang
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced
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LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced
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LncRNAWiki Ma, Lina; Li, Ang; Zou, Dong; Yu, Jun; Bajic, Vladimir; Zhang, Zhang
Community-curated database of human lncRNAs
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Community-curated database of human lncRNAs
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LncSEA Wang, Qiuyu; Zhang, Guorui; Song, Chao; Fan, Shifan; Yin, Mingxue; Wang, Xinyue; Zhang, Yuexin2; Huang, Xuemei; Li, Ye; Shang, Desi; Li, Chunquan
LncSEA 2.0: an updated platform for long non-coding RNA related sets and enrichment analysis
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LncSEA 2.0: an updated platform for long non-coding RNA related sets and enrichment analysis
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LncSEA Li, Chunquan; Chen, Jiaxin; Zhang, Jian.,; Gao, Yu; Li, Yanyu; Feng, Chenchen; Song, Chao; Ning, Ziyu; Zhou, Xinyuan; Zhao, Jianmei; Feng, Minghong; Zhang, Yue-Xin; Wei, Ling; Pan, QI; Jiang, Yong'; Qian, Feng-Cui; Han, Junwei.; Yang, YongSan; Wang, Qiuyu
Reference human lncRNA sets
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Reference human lncRNA sets
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lncTarD Wang, Li; Zhao, Hongying; Yin, Xiangzhe; Xu, Haotian; Liu, Kailai; Liu, Wangyang; Wang, Lixia; Zhang, Caiyu; Bo, Lin; Lan, Xicheng; Lin, Shihua; Feng, Ke; Ning, Shangwei; zhang, Yunpeng`
LncTarD 2.0: an updated comprehensive database for experimentally-supported
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LncTarD 2.0: an updated comprehensive database for experimentally-supported
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LncTarD: a manually-curated database of experimentally-supported functional lncRNA–target regulations in human diseases Zhao, Hongying;Shi, Jian;Zhang, Yunpeng;Xie, Aimin;Yu, Lei;Zhang, Caiyu;Lei, Junjie;Xu, Haotian;Leng, Zhijun;Li, Tengyue;Huang, Waidong;Lin, Shihua;Wang, Li;Xiao, Yun;Li, Xia
No description supplied
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No description supplied
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LOCATE Fink J.L.1,2, Aturaliya R.N.1,2, Davis M.J.2, Zhang F. 2, Hanson K.1,2, Teasdale M.S. 2, Kai C. 3, Kawai, J.3,4, Carninci P.3,4, Hayashizaki Y.3,4 and Teasdale R.D.1,2
Subcellular localization of mouse proteins
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Subcellular localization of mouse proteins
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LocDB Shruti Rastogi 1, and Burkhard Rost 1,2,3
Experimental annotations of localization for Homo sapiens and Arabidopsis thaliana
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Experimental annotations of localization for Homo sapiens and Arabidopsis thaliana
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Locus Reference Genomic sequences Cunningham, Fiona; MacArthur, Jacqueline; Morales, Joannella; Tully, Ray; Astashyn, Alex; Gil, Laurent; Bruford, Elspeth; Dalgleish, Raymond; Larsson, Pontus; Flicek, Paul; Maglott, Donna
Each LRG is stable genomic DNA sequence for a region of the human genome
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Each LRG is stable genomic DNA sequence for a region of the human genome
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LOQATE Schuldiner, Maya; Breker, Michal; Moldavski, Ofer; Gymrek, Melissa
Localization and Quantitation Atlas of the Yeast Proteome
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Localization and Quantitation Atlas of the Yeast Proteome
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Lowe Syndrome Mutation Database
Mutations in the OCRL1 gene encoding phosphatidylinositol-4,5-bisphosphate 5-phosphatase
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Mutations in the OCRL1 gene encoding phosphatidylinositol-4,5-bisphosphate 5-phosphatase
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LOX-DB LÜtteke, T.1, Krieg, P.2, FÜrstenberger, G.2, von der Lieth, C.-W.1
Mammalian, invertebrate, plant and fungal lipoxygenases
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Mammalian, invertebrate, plant and fungal lipoxygenases
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LPSN and TYGS Meier-Kolthoff, Jan; Sardà Carbasse, Joaquim; Peinado-Olarte, Rosa L.; Göker, Markus
List of Prokaryotic names with Standing in Nomenclature and Type Strain Genome Server
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List of Prokaryotic names with Standing in Nomenclature and Type Strain Genome Server
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Lynx: a database and knowledge extraction engine for integrative medicine Sulakhe, Dinanath (contact); Xie, Bingqing; Taylor, Andrew; D'Souza, Mark; Balasubramanian, Sandhya; Hashemifar, Somaye; White, Steven; Dave, Utpal; Agam, Gady; Xu, Jinbo; Wang, Sheng; Gilliam, Conrad; Maltsev, Natalia
Genomic and clinical data on complex heritable disorders
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Genomic and clinical data on complex heritable disorders
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M-CSA Ribeiro, Antonio; Holliday, Gemma; Furnham, Nicholas; Tyzack, Jonathan; Ferris, Katherine; Thornton, Janet
No description supplied
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No description supplied
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M2OR Topin, Jérémie; Lalis, Maxence; Hladiš, Matej; Briand, Loïc; Fiorucci, Sébastien
M2OR: A Database of Olfactory Receptor-Odorant Pairs for Understanding the Molecular Mechanisms of Olfaction
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M2OR: A Database of Olfactory Receptor-Odorant Pairs for Understanding the Molecular Mechanisms of Olfaction
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m5C-Atlas Chen, Kunqi; Ma, Jiongming; Song, Bowen; Wei, Zhen.; Huang, Daiyun; Zhang, Yuxin; Su, Jionglong; Magalhães, João Pedro de; Rigden, Daniel J.; Meng, Jia
The 5-methylcytosine (m5C) epitranscriptome
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The 5-methylcytosine (m5C) epitranscriptome
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m6A-Atlas Chen, Kunqi; Lu, Zhi-Liang; Magalhães, João Pedro de; Meng, Jia; Rong, Rong; Song, Bowen; Su, Jionglong; Tang, Yujiao; Wei, Zhen.; Wu, Xiangyu; Xu, Qingru; Ma, Jiongming; Liu, Gang; Rigden, Daniel J.
The N6-methyladenosine (m6A) epitranscriptome including base-resolution data
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The N6-methyladenosine (m6A) epitranscriptome including base-resolution data
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m6A-Atlas Chen, Kunqi; Liang, Zhanmin; Ye, Haokai; Ma, Jiongming; Wei, Zhen; Wang, Yue; Zhang, Yuxin2; huang, daiyun; Song, Bowen; Meng, Jia; Rigden, Daniel J.
m6A-Atlas v2.0: updated resources for unravelling the N6-methyladenosine (m6A) epitranscriptome among multiple species
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m6A-Atlas v2.0: updated resources for unravelling the N6-methyladenosine (m6A) epitranscriptome among multiple species
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M6AREG Liu, Shuiping; CHEN, Lu; ZHANG, Yintao; ZHOU, Ying; HE, Ying; Chen, Zhen; QI, Shasha; ZHU, Jinyu; CHEN, Xudong; ZHANG, Hao; Luo, Yongchao; Tao, Lin; Zhu, Feng
m6A vs disease and drug response
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m6A vs disease and drug response
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m6AVar Ren, Jian; Zheng, Yueyuan; Nie, Peng; Peng, Di; He, Zhihao; Liu, Mengni; Xie, Yubin; Miao, Yanyan; Zuo, Zhixiang
No description supplied
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No description supplied
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m7GHub Song, Bowen; Wang, Xuan; Zhang, Yuxin2; Chen, Kunqi; Liang, Zhanmin; Ma, Jiongming; Xia, Rong; de Magalhães, João Pedro; Rigden, Daniel J.; Meng, Jia
m7GHub V2.0: an updated database for decoding the N7-methylguanosine (m7G) epitranscriptome
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m7GHub V2.0: an updated database for decoding the N7-methylguanosine (m7G) epitranscriptome
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MACC Cao, Zhiwei; Gao, Jian; Mo, Saifeng; Wang, Jun; Zhang, Mou; Shi, Yao; Zhu, Chuhan; Shang, Yuxuan; Tang, Xinyue; Zhang, Shiyue; Wu, Xinwen; Xu, Xinyan; Wang, Yiheng; Li, Zihao; Zheng, Genhui; Chen, Zikun; Wang, Qiming; Tang, KaiLin,
MACC: A Visual Interactive Knowledgebase of Metabolite-Associated Cell Communications
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MACC: A Visual Interactive Knowledgebase of Metabolite-Associated Cell Communications
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MACiE Holliday, Gemma1; Andreini, Claudia2,3; Fischer, Julia1; Rahman, Syed1; Almonacid, Daniel4; Williams, Sophie1 and Pearson, William5
Mechanism, Annotation and Classification in Enzymes
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Mechanism, Annotation and Classification in Enzymes
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MaizeGDB Lawrence, C.J.1, Dong, Q.1, Polacco, M.L.3, Seigfried, T.E.1, Brendel, V.1,2
Maize genetics and genomics database
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Maize genetics and genomics database
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MAJIQlopedia Quesnel-Vallières, Mathieu; Jewell, San; Barash, Yoseph; Thomas-Tikhonenko, Andrei; Lynch, Kristen
MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer
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MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer
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MalaCards Rappaport, Noa; Twik, Michal; Plaschkes, Inbar; Nudel, Ron; Iny Stein, Tsippi; Levitt, Jacob; Gershoni, Moran; Morrey, C; Safran, Marilyn; Lancet, Doron
Human maladies and their annotations, organized into "disease cards"
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Human maladies and their annotations, organized into "disease cards"
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MAMEP - Molecular Anatomy of the Mouse Embryo Project
Gene expression data on mouse embryos
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Gene expression data on mouse embryos
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MAMI Zhao, Fangqing; Zhou, Tian; Xiao, Liwen; Zuo, Zhenqiang
MAMI: a comprehensive database of mother-infant microbiome and probiotic resources
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MAMI: a comprehensive database of mother-infant microbiome and probiotic resources
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Mammalian Gene Collection
Full-length open reading frame clones for human, mouse, and rat genes
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Full-length open reading frame clones for human, mouse, and rat genes
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MamMiBase de Vasconcelos A.T.R.1, GuimarÃes A.C.R.1, Castelletti C.H.M.1, Caruso C.S.1, Ribeiro C.1, Yokaichiya F.1, ArmÔa G.R.G.3, Pereira G.S.P.1, da Silva I.T.1, Schrago C.G.2, Fernandes A.L.V.1, da Silveira A.R.1, Carneiro A.G.1, Carvalho B.M.1, Viana C.J.M.1, Gramkow D.1, Lima F.J.1, CorrÊa L.G.G.1, Mudado M.A.1, Nehab-Hess P.2, de Souza R.1, CorrÊa R.L.1 and Russo C.A.M.2
Mammalian Mitochondrial genome database
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Mammalian Mitochondrial genome database
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MamPol Egea R.1, Casillas S.1, Fernández E.2, Senar MA.2 and Barbadilla A.1
Mammalia Polymorphism Database
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Mammalia Polymorphism Database
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Manteia Tassy, Olivier; Pourquié, Olivier
Embryonic development of the mouse, chicken, zebrafish and human
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Embryonic development of the mouse, chicken, zebrafish and human
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Manually Curated Database of Rice Proteins Priyanka Garg, Rashmi Jain, Shaji V. Joseph, Akhilesh K. Tyagi, Saurabh Raghuvanshi
Manually curated database of rice proteins
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Manually curated database of rice proteins
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MAPU Gnad, F.1, Oroshi, M.1, Birney, E.2, Mann, M.1
Max-Planck Unified Proteome Database
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Max-Planck Unified Proteome Database
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markerDB Wishart, David; Bartok, Brendan; Oler, Eponine; Liang, Kevin; Budinski, Zachary; Berjanskii, Mark; Guo, An Chi; Cao, Xuan; Wilson, Michael ,
Biomarkers: chemical, protein, chromosomal and genetic
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Biomarkers: chemical, protein, chromosomal and genetic
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MASI Chen, Yu Zong; Zeng, Xian; Yang, Xue; Fan, Jiajun; Tan, Ying'; Ju, Lingyi; Shen, Wanxiang; Wang, Yali.; Wang, Xinghao; Chen, Wei Ping; Ju, Dianwen
Microbiota - Active Substance Interactions database
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Microbiota - Active Substance Interactions database
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MatrisomeDB Alexandra Naba
The extracellular matrix (ECM) is a complex and dynamic meshwork of cross-l
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The extracellular matrix (ECM) is a complex and dynamic meshwork of cross-l
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MatrixDB Launay, Guillaume; Salza, Romain; Thierry-Mieg, Nicolas; RICARD-BLUM, Sylvie
Extracellular matrix proteins and their interactions
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Extracellular matrix proteins and their interactions
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MatrixDB: integration of new data with a focus on glycosaminoglycan interactions Clerc, Olivier;Deniaud, Madeline;Vallet, Sylvain D;Naba, Alexandra;Rivet, Alain;Perez, Serge;Thierry-Mieg, Nicolas;Ricard-Blum, Sylvie
No description supplied
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No description supplied
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MBGD - Microbial Genome Database Uchiyama, Ikuo; Mihara, Motohiro; Nishide, Hiroyo; Chiba, Hirokazu
Microbial genome database for comparative analysis
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Microbial genome database for comparative analysis
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mBodyMap Chen, Weihua; Jin, Hanbo; Hu, Guoru; Sun, Chuqing; Duan, Yiqian; ZHANG, Zhenmo; Zhao, Xing-Ming; Liu, Zhi,
Distribution of microbes across the human body in health and disease
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Distribution of microbes across the human body in health and disease
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MeDAS Chen, Lu; Li, Zhidan; Zhang, Yi-ming; Bush, Stephen J; Tang, Chao; Chen, Li; Zhang, Dan; Urrutia, Araxi; Lin, Jing-wen
Alternative splicing during development in 20 species
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Alternative splicing during development in 20 species
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MeDBA Li, Guo-Bo; Yu, Jun-Lin; Wu, Song; Zhou, Cong; Dai, Qing-Qing; Schofield, Christopher
Metalloenzyme families, structures, ligands
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Metalloenzyme families, structures, ligands
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MediaDive Koblitz, Julia; Halama, Philipp; Spring, Stefan; Thiel, Vera; Baschien, Christiane; Hahnke, Richard; Pester, Michael; Overmann, Jörg; Reimer, Lorenz
Culture media
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Culture media
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MeDReaders Wang, Guohua; Luo, Ximei; Wang, Jianan; Wan, Jun.; Xia, Shuli; Zhu, Heng; Qian, Jiang; Wang, Yadong
No description supplied
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No description supplied
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MEGaRes Boucher, Christina; Lakin, Steven; Dean, Chris; Noyes, Noelle; Dettenwanger, Adam; Ross, Annie; Doster, Enrique; Rovira, Pablo; Abdo, Zaid; Jones, Kenneth; Ruiz, Jaime; Belk, Keith; Morley, Paul
Mechanisms of antimicrobial resistance
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Mechanisms of antimicrobial resistance
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MegaRes Bonin, Nathalie; Doster, Enrique; Worley, Hannah; Pinnell, Lee J.; Bravo, Jonathan E.; Ferm, Peter; Marini, Simone; Prosperi, Mattia; Noyes, Noelle; Morley, Paul S.; Boucher, Christina
MEGARes and AMR++, v3.0: An updated comprehensive database of antimicrobial
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MEGARes and AMR++, v3.0: An updated comprehensive database of antimicrobial
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MeGX Lombardot T.1, Kottman R.1, Pfeffer H.1, Richter M.1, Teeling H.1, Quast C.1 and Glöckner F.O.1,2
Database portal for marine ecological genomics
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Database portal for marine ecological genomics
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Membranome Lomize, Andrei; Lomize, Mikhail; Krolicki, Shean; Pogozheva, Irina
A database of single-pass membrane proteins
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A database of single-pass membrane proteins
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MemMoRF Hegedus, Tamas; Csizmadia, Georgina; Erdős, Gábor; Tordai, Hedvig; Padányi, Rita; Dosztanyi, Zsuzsanna,
Membrane-binding Molecular Recognition Features
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Membrane-binding Molecular Recognition Features
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MemMoRF Georgina Csizmadia1, Gábor Erdős2, Hedvig Tordai1, Rita Padányi1, Silvio Tosatto3, Zsuzsanna Dosztányi2, Tamás Hegedűs1
No description supplied
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No description supplied
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MeMotif Annalisa Marsico, Kerstin Scheubert, Anne Tuukkanen, Andreas Henschel, Christof Winter, Rainer Winnenburg, and Michael Schroeder
Linear motifs in alpha-helical transmembrane proteins
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Linear motifs in alpha-helical transmembrane proteins
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MEPD: A Medaka gene expression pattern database Henrich, T.1, Ramialison, M.1, Quiring, R.2, Wittbrodt, B.2, Furutani-Seiki, M.1, Wittbrodt, J.2, Kondoh, H.1
Medaka (freshwater fish Oryzias latipes) gene expression pattern database
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Medaka (freshwater fish Oryzias latipes) gene expression pattern database
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MERAV Shaul, Yoav; Yuan, Bingbing; Thiru, Prathapan; Nutter-Upham, Andy; McCallum, Scott; Lanzkron, Carolyn; Bell, George; Sabatini, David
Metabolic gEne RApid Visualizer
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Metabolic gEne RApid Visualizer
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MEROPS Rawlings, Neil; Barrett, Alan; Thomas, Paul; Huang, Xiaosong; Finn, Robert; Bateman, Alex
The MEROPS database (http://www.ebi.ac.uk/merops/) is an integrated source
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The MEROPS database (http://www.ebi.ac.uk/merops/) is an integrated source
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mESAdb Koray D. Kaya, Gökhan Karakülah, Cengiz M. Yak?c?er, Aybar C. Acar, and Özlen Konu
microRNA Expression and Sequence Analysis Database
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microRNA Expression and Sequence Analysis Database
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MESPEUS Hsin, Kun-Yi; Lin, Geng-Yu; Su, Yu-Cheng; Lin Huang, Yen
MESPEUS: a database of metal coordination groups in proteins
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MESPEUS: a database of metal coordination groups in proteins
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MeT-DB Huang, Yufei; Liu, Hui; Wang, Huaizhi; Wei, Zhen; Yao, Songyao; Zhang, Lin; Hua, Gang; Zhang, Shaowu; Gao, Shou-Jiang; Meng, Jia; Chen, Xing
No description supplied
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No description supplied
database summary
MeT-DB Huang, Yufei; Liu, Hui; Flores, Mario; Meng, Jia; Zhang, Lin; Zhao, Xinyu; Rao, Manjeet; Chen, Yidong
RNA MEthylation by SEquencing databaSe
database summary
RNA MEthylation by SEquencing databaSe
database summary
meta.MicrobesOnline Dylan Chivian
A suite of Web-based comparative genomic tools for metagenome analysis
database summary
A suite of Web-based comparative genomic tools for metagenome analysis
database summary
MetaBioME Vineet K. Sharma, Naveen Kumar, Tulika Prakash, and Todd D. Taylor
Metagenomic BioMining Engine: homologs of commercially useful enzymes in metagenomic datasets
database summary
Metagenomic BioMining Engine: homologs of commercially useful enzymes in metagenomic datasets
database summary
MetaboLights Christoph Steinbeck
A database for metabolomics experiments and the associated metadata
database summary
A database for metabolomics experiments and the associated metadata
database summary
Metabolights O'Donovan, Claire; Yurekten, Ozgur; Payne, Thomas; Tejera, Noemi; Amaladoss, Felix; Martin, Callum; Williams, Mark,
MetaboLights: open data repository for metabolomics
database summary
MetaboLights: open data repository for metabolomics
database summary
Metabolomics Workbench Subramaniam, Shankar; Sud, Manish; Fahy, Eoin; Cotter, Dawn; Azam, Kenan; Vadivelu, Ilango; Burant, Charles; Edison, Arthur; Fiehn, Oliver; Higashi, Richard; Nair, Sree; Sumner, Susan
Data repository for metabolomics data and metadata, metabolite standards, protocols, analysis tools, tutorials and training
database summary
Data repository for metabolomics data and metadata, metabolite standards, protocols, analysis tools, tutorials and training
database summary
MetaCyc Caspi, Ron; Billington, Richard; Fulcher, Carol; Keseler, Ingrid; Kothari, Anamika; Krummenacker, Markus; Latendresse, Mario; Midford, Peter; Ong, Quang; Ong, Wai Kit; Paley, Suzanne; Subhraveti, Pallavi; Karp, Peter
No description supplied
database summary
No description supplied
database summary
MetalPDB Andreini, Claudia; Putignano, Valeria; Rosato, Antonio; Banci, Lucia
No description supplied
database summary
No description supplied
database summary
MetalPDB Andreini, C.1,2, Cavallaro, G.1, Lorenzini, S.1, and Rosato, A.1,2
Metal-binding sites and their structural environment within macromolecular structures
database summary
Metal-binding sites and their structural environment within macromolecular structures
database summary
MetaRef Segata, Nicola; Huang, Katherine; Brady, Arthur; Mahurkar, Anup; White, Owen; Gevers, Dirk; Huttenhower, Curtis
Metagenomic catalog of clade-specific microbial genes
database summary
Metagenomic catalog of clade-specific microbial genes
database summary
MetazExp Huang, Wen; Liu, Jinding; Yin, Fei; Lang, Kun; Jie, Wencai; Tan, Suxu; Duan, Rongjing; Huang, Shuiqing
Analysis of gene expression and alternative splicing in metazoans
database summary
Analysis of gene expression and alternative splicing in metazoans
database summary
MethBank
MethBank (http://bigd.big.ac.cn/methbank) is a database that integrates hig
database summary
MethBank (http://bigd.big.ac.cn/methbank) is a database that integrates hig
database summary
MethBank Zhang, Zhang; Zou, Dong; Sun, Shixiang; Li, Rujiao; Liu, Jiang; Zhang, Jing
Single-base nucleotide methylomes of gametes and early embryos
database summary
Single-base nucleotide methylomes of gametes and early embryos
database summary
MethBank Zhang, Mochen; Zong, Wenting; Zou, Dong; Guoliang, Wang; Zhao, Wei; Yang, Fei; Wu, Song; Zhang, Xinran; Guo, Xutong; Ma, Yingke; xiong, zhuang; Zhang, Zhang; Bao, Yi-Ming; Li, Rujiao
MethBank 4.0: an updated database of DNA methylation across a variety of sp
database summary
MethBank 4.0: an updated database of DNA methylation across a variety of sp
database summary
MethHC Huang, Hsien-Da; Huang, Hsi-Yuan; Li, Jing,; Tang, Yun; Huang, Yi-Xian; Chen, Yi-Gang; Xie, Yue-Yang; Zhou, Zhe-Yuan; Chen, Xin-Yi; Ding, Si-Yuan; Luo, Meng-Fan; Zhao, Le-Shan; Xu, Jia-Tong; Zhou, Ying; Lin, Yang-Chi-Dung; Hong, Hsiao-Chin; Jin, Chen-Nan;
DNA methylation in human cancer
database summary
DNA methylation in human cancer
database summary
MethMarkerDB Zhizian Zhu, Qiangwei Zhou, Yuanhi Sun, Fuming Lai, Zhenji Wand, Zhigang Hao, Guolian Li
MethMarkerDB is a comprehensive cancer DNA methylation biomarker database.
database summary
MethMarkerDB is a comprehensive cancer DNA methylation biomarker database.
database summary
MethMotif Benoukraf, Touati; Dyer, Matthew; Lin, Quy Xiao Xuan; Shapoval, Sofiia; Thieffry, Denis
MethMotif.org 2024: A database integrating context-specific transcription factor binding motifs with DNA methylation patterns
database summary
MethMotif.org 2024: A database integrating context-specific transcription factor binding motifs with DNA methylation patterns
database summary
MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles Xuan Lin, Quy Xiao;Sian, Stephanie;An, Omer;Thieffry, Denis;Jha, Sudhakar;Benoukraf, Touati
No description supplied
database summary
No description supplied
database summary
MethSMRT Xie, Zhi; Ye, Yohao; Luan, Yizhao; Xiao, Chuanle; Chen, Kaining; Liu, Yizhi
DNA methylation data from single molecule, real-time sequencing
database summary
DNA methylation data from single molecule, real-time sequencing
database summary
MG-RAST Wilke, Andreas; Bischof, Jared; Gerlach, Wolfgang; Glass, Elizabeth; Harrison, Travis; Keegan, Kevin; Paczian, Tobias; Trimble, William; Meyer, Folker
Data portal for the processing, analyzing, sharing and disseminating of metagenomic data sets
database summary
Data portal for the processing, analyzing, sharing and disseminating of metagenomic data sets
database summary
MGA Bucher, Philipp; Dreos, René; Ambrosini, Giovanna; Groux, Romain
No description supplied
database summary
No description supplied
database summary
MGAN Welch, Roy; Pratt-Szeliga, Philip; Skewes, Aaron; Yan, Jinyuan; Welch, Laura
Microbial Genome Annotation Network
database summary
Microbial Genome Annotation Network
database summary
MGnify Finn, Robert; Richardson, Lorna; Allen, Ben; Baldi, Germana; Beracochea, Martin; Bileschi, Maxwell L.; Burdett, Tony; Burgin, Josephine; Caballero-Pérez, Juan; Cochrane, Guy; Colwell, Lucy; Curtis, Thomas; Escobar-Zepeda, Alejandra; Gurbich, Tatiana; Kale
MGnify - the microbiome sequence data analysis resource in 2023
database summary
MGnify - the microbiome sequence data analysis resource in 2023
database summary
MHC Motif Atlas Tadros, Daniel; Eggenschwiler, Simon; Gfeller, David; Racle, Julien
MHC Binding Specificities and Ligands
database summary
MHC Binding Specificities and Ligands
database summary
MHCBN Bhasin M. and Raghava G.P.S.
A database of MHC binding and non-binding peptides
database summary
A database of MHC binding and non-binding peptides
database summary
MIBiG Terlouw, Barbara; Blin, Kai; Navarro-Muñoz, Jorge C.; Avalon, Nicole; Chevrette, Marc; Egbert, Susan; Lee, Sanghoon; Meijer, David; Recchia, Michael J. J.; Reitz, Zachary L.; van Santen, Jeffrey A.; Selem-Mojica, Nelly; Tørring, Thomas; Zaroubi, Liana; Al
MIBiG 3.0: A community-driven effort to annotate experimentally validated b
database summary
MIBiG 3.0: A community-driven effort to annotate experimentally validated b
database summary
MicrobesOnline Paramvir S. Dehal, Marcin P. Joachimiak, Morgan N. Price, John T. Bates, Jason K. Baumohl, Dylan Chivian, Greg D. Friedland, Katherine H. Huang, Keith Keller, Pavel S. Novichkov, Inna L. Dubchak, Eric J. Alm, and Adam P. Arkin
A suite of Web-based tools for comparative genomics
database summary
A suite of Web-based tools for comparative genomics
database summary
microbiomeDB Beiting, Daniel; Oliveira, Francislon; Brestelli, John; Cade, Shon; Iodice, John; Fisher, Steve; Aurrecoechea, Cristina; Kissinger, Jessica; Brunk, Brian; Stoeckert, Chris; Fernandes, Gabriel; Roos, David
No description supplied
database summary
No description supplied
database summary
microbioTA Cheng, Liang; Wang, Ping; Zhang, Sainan; He, Guoyou; Du, Meiyu; Qi, Changlu; Liu, Ruyue; Zhang, Siyuan; Zhang, Xue1
Cancer microbiomes
database summary
Cancer microbiomes
database summary
MiCroKitS Huang, Zhengnan; Ma, Lili; Wang, Yongbo; Pan, Zhicheng; Ren, Jian; Liu, Zexian; Xue, Yu
Midbody, Centrosome, Kinetochore and Spindle proteins
database summary
Midbody, Centrosome, Kinetochore and Spindle proteins
database summary
MiMeDB Wishart, David; Oler, Eponine; Peters, Harrison; Guo, An Chi; Girod, Sagan; Han, Scott; Saha, Sukanta; Liu, Vicki; LeVatte, Marcia; Gautam, Vasuk; Kaddurah-Daouk, Rima; Karu, Naama
Human-microbe interactions and their metabolomes
database summary
Human-microbe interactions and their metabolomes
database summary
MimoDB Jian Huang
Mimotope database, active site-mimicking peptides selected from phage-display libraries
database summary
Mimotope database, active site-mimicking peptides selected from phage-display libraries
database summary
Minimotif miner Schiller, Martin; Lyon, Ken; Cai, Xingyu; Mamun, Abdullah; Young, Richard; Rajasekaran, Sanguthevar
No description supplied
database summary
No description supplied
database summary
Minimotif Miner Schiller, Martin; Merlin, Jerlin; Mi, Tian.; Deverasetty, Sandeep; Gryk, Michael; Bill, Travis; Brooks, Andrew; Lee, Logan; Rathnayake, Viraj; Ross, Christian; Sargeant, David; Strong, Christy; Watts, Paula; Rajasekaran, Sanguthevar
Search tools for short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules
database summary
Search tools for short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules
database summary
MINRbase Rigoutsos, Isidore; Pliatsika, Venetia; Cherlin, Tess; Loher, Phillipe; Vlantis, Panagiotis I.; Nagarkar, Parth; Nersisyan, Stepan
MINRbase: a comprehensive database of nuclear- and mitochondrial-ribosomal-RNA-derived fragments (rRFs)
database summary
MINRbase: a comprehensive database of nuclear- and mitochondrial-ribosomal-RNA-derived fragments (rRFs)
database summary
MINT Briganti, Leonardo1; Licata, Luana1; Peluso, Daniele2; Perfetto, Livia1; Iannuccelli, Marta1; Galeota, Eugenia1; Sacco, Francesca1; Palma, Anita1; Nardozza, Aurelio1; Santonico, Elena1; Castagnoli, Luisa1; Cesareni, Gianni1,2
Molecular INTeraction database
database summary
Molecular INTeraction database
database summary
MINTbase Rigoutsos, Isidore; Pliatsika, Venetia; Loher, Phillipe; Magee, Rogan; Telonis, Aristeidis; Shigematsu, Megumi; Kirino, Yohei
MINTbase is a repository that comprises nuclear and mitochondrial tRNA-deri
database summary
MINTbase is a repository that comprises nuclear and mitochondrial tRNA-deri
database summary
MIPSPlantsDB Spannagl, Manuel; Nussbaumer, Thomas; Martis, Mihaela; Rößner, Stephan; Pfeifer, Matthias; Bader, Kai; Sharma, Sapna; Gundlach, Heidrun
MIPS Plants Databases
database summary
MIPS Plants Databases
database summary
miR2Disease
Literature-curated database for validatedly or potentially pathogenic roles of dysregulated miRNAs in human disease
database summary
Literature-curated database for validatedly or potentially pathogenic roles of dysregulated miRNAs in human disease
database summary
miRandola Russo, Francesco; Di Bella, Sebastiano; Vannini, Federica; Berti, Gabriele; Scoyni, Flavia; Cook, Helen; Santos, Alberto; Nigita, Giovanni; Bonnici, Vincenzo; Laganà, Alessandro; GERACI, FILIPPO; Pulvirenti, Alfredo; Giugno, Rosalba; De Masi, Federico; Belling, Kirstine; Jensen, Lars,; Brunak, Søren; Pellegrini, Marco; Ferro, Alfredo
miRandola (http://mirandola.iit.cnr.it/) is a database of extracellular non
database summary
miRandola (http://mirandola.iit.cnr.it/) is a database of extracellular non
database summary
miRBase Kozomara, Ana;Birgaoanu, Maria;Griffiths-Jones, Sam
Database of microRNAs (small noncoding RNAs)
database summary
Database of microRNAs (small noncoding RNAs)
database summary
miRCarta Backes, Christina; Fehlmann, Tobias; Kern, Fabian; Kehl, Tim; Lenhof, Hans-Peter; Meese, Eckart; Keller, Andreas
The continuous increase of available biological data as consequence of mode
database summary
The continuous increase of available biological data as consequence of mode
database summary
miRDB Wong, Nathan; Wang, Xiaowei
miRNA target prediction and functional annotation
database summary
miRNA target prediction and functional annotation
database summary
miRDB: an online database for prediction of functional microRNA targets Chen, Yuhao;Wang, Xiaowei
No description supplied
database summary
No description supplied
database summary
mirDIP Hauschild, Anne-Christin; Pastrello, Chiara; Ekaputeri, Gitta Kirana Anindya; Waddell, Dylan Bethune; Abovsky, Mark; Ahmed, Zuhaib; Kotlyar, Max; Lu, Richard; Jurisica, Igor
MirDIP 5.2: tissue context annotation and novel microRNA curation
database summary
MirDIP 5.2: tissue context annotation and novel microRNA curation
database summary
mirDIP Jurisica, Igor; Tokar, Tomas; Pastrello, Chiara; Rossos, Andrea; Abovsky, Mark; Hauschild, Anne-Christin; Tsay, Mike; Lu, Richard
MicroRNAs are important regulators of gene expression, achieved by binding
database summary
MicroRNAs are important regulators of gene expression, achieved by binding
database summary
mirDNMR Jiang, Yi; Li, Zhongshan; Liu, Zhenwei; Chen, Denghui; Wu, Wanying; Du, Yaoqiang; Ji, Liying; Li, Wei.'; Wu, Jinyu
Background de novo mutation rates in human genes
database summary
Background de novo mutation rates in human genes
database summary
MirGeneDB Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Umu, Sinan; Chabot, Peter; Kang, Wenjing; Aslanzadeh, Morteza; Tarbier, Marcel; Mármol-Sánchez, Emilio; Urgese, Gianvito; Johansen, Morten; Hovig, Eivind; Hackenberg,
Animal miRNA complements
database summary
Animal miRNA complements
database summary
MirGeneDB 2.0: the metazoan microRNA complement Fromm, Bastian;Domanska, Diana;Høye, Eirik;Ovchinnikov, Vladimir;Kang, Wenjing;Aparicio-Puerta, Ernesto;Johansen, Morten;Flatmark, Kjersti;Mathelier, Anthony;Hovig, Eivind;Hackenberg, Michael;Friedländer, Marc R;Peterson, Kevin J
Small non-coding RNAs have gained substantial attention due to their roles
database summary
Small non-coding RNAs have gained substantial attention due to their roles
database summary
miRNATissueAtlas Keller, Andreas; Groeger, Laura; Tschernig, Thomas; Solomon, Jeffrey; Schaum, Nick; Al-Lahham, Omar; Wagner, Viktoria; Kern, Fabian; Schmartz, Georges; Li, Yongping; Borcherding, Adam; Meier, Carola; Wyss-Coray, Tony; Meese, Eckart; Fehlmann, Tobias; Ludw
ncRNA expression across organs and organ systems
database summary
ncRNA expression across organs and organ systems
database summary
miRNEST Makalowska, Izabela; Szczesniak, Michal
microRNAs in animal and plant EST sequences
database summary
microRNAs in animal and plant EST sequences
database summary
miRPathDB Keller, Andreas; Backes, Christina; Kehl, Tim; Stöckel, Daniel; Fehlmann, Tobias; Schneider, Lara; Meese, Eckart ,; Lenhof, Hans-Peter
Dictionary on miRNAs and their putative target pathways
database summary
Dictionary on miRNAs and their putative target pathways
database summary
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database Kehl, Tim;Kern, Fabian;Backes, Christina;Fehlmann, Tobias;Stöckel, Daniel;Meese, Eckart;Lenhof, Hans-Peter;Keller, Andreas
No description supplied
database summary
No description supplied
database summary
miRTarBase Huang, Hsien-Da; Hsu, Sheng-Da; Tseng, Yu-Ting; Shrestha, Sirjana; Lin, Yu-Ling; Khaleel, Anas; Chou, Chih-Hung; Huang, Hsi-Yuan; Lin, Ching-Min; Ho, Shu-Yi; Jian, Ting-Yan; Lin, Feng-Mao; Chang, Tzu-Hao; Weng, Shun-Long; Liao, Kuang-Wen; Liao, I-En; Liu, Chun-Chi
Experimentally validated microRNA-target interactions
database summary
Experimentally validated microRNA-target interactions
database summary
miRTarBase Huang, Hsien-Da; Huang, Hsi-Yuan; Lin, Yang-Chi-Dung; Cui, Shi-Dong; Huang, Yi-xian; Tang, Yun; Xu, Jiatong; Bao, Jiayang; Li, Yulin; Wen, Jia; Zuo, Hua-Li; Wang, Weijuan; Li, Jing,; Ni, Jie; Ruan, Yini; Li, Liping; Chen, Yidan; Xie, Yue-Yang; Zhu, Zihao;
miRTarBase update 2022: An informative resource for experimentally validate
database summary
miRTarBase update 2022: An informative resource for experimentally validate
database summary
miRTarBase Huang, Hsien-Da; Chou, Chih-Hung; Shrestha, Sirjana; Yang, Chi -Dung; Chang, Nai-Wen; Lin, Yu-Ling; Liao, Kuang-Wen; Huang, Wei-Chi; Sun, Ting-Hsuan; Tu, Siang-Jyun; Lee, Wei-Hsiang; Chiew, Men-Yee; Li, Meng-Ju; Wu, Yu-Chun; Huang, Xin-Yi; Ng, Fung Ling; Buddhakosai, Waradee; Huang, Pei-Chun; Lan, Kuan-Chun; Huang, Chia-Yen; Weng, Shun- Long; Cheng, Yeong-Nan; Hsu, Wen-Lian; Tai, Chun-San; Wei, Ting-Yen; Tsai, Tzi-Ren; Huang, Hsin-Tzu; Wang, Chung-Yu; Wu, Yi-Shin; Ho, Shu-Yi; Chen, Pin-Rong; Chuang, Cheng-Hsun; Hsieh, Pei-Jung; Wu, Yi-Shin; Chen, Wen-Liang; Liang, Chao
No description supplied
database summary
No description supplied
database summary
mirTrans Tang, Rongjun; Hua, Xu; Xu, Xiuxiu; Wang, Zhi; Xu, Qi; Chen, Luxiao; Wingender, Edgar; Li, Jie'; Wang, Jin.
No description supplied
database summary
No description supplied
database summary
MIST Perrimon, Norbert; Hu, Yanhui; Vinayagam, Arunachalam; Nand, Ankita; Comjean, Aram; Chung, Verena; Hao, Tong; Mohr, Stephanie
Model organism and human databases are rich with information about genetic
database summary
Model organism and human databases are rich with information about genetic
database summary
MiST Gumerov, Vadim; Ulrich, Luke; Zhulin, Igor
MiST 4.0: a new release of the microbial signal transduction database, now with a metagenomic component
database summary
MiST 4.0: a new release of the microbial signal transduction database, now with a metagenomic component
database summary
MiST 3.0 Vadim M. Gumerov, Davi R. Ortega, Ogun Adebali, Luke E. Ulrich and Igor B. Zhulin
Bacteria and archaea employ dedicated signal transduction systems that modu
database summary
Bacteria and archaea employ dedicated signal transduction systems that modu
database summary
miTED Hatzigeorgiou, Artemis; Kavakiotis, Ioannis; Alexiou, Athanasios; Tastsoglou, Spyros; Vlachos, Ioannis S.
microRNA Tissue Expression Database
database summary
microRNA Tissue Expression Database
database summary
MitoAge Toren, Dmitri; Barzilay, Thomer; Tacutu, Robi; Lehmann, Gilad; Muradian, Khachik; Fraifeld, Vadim
Mitochondrial DNA and longevity
database summary
Mitochondrial DNA and longevity
database summary
MitoBreak - The mitochondrial DNA breakpoints database Damas, J.1, Carneiro, J. 1, Amorim, A. 1, 2, Pereira, F. 1,3
Mitochondrial DNA breakpoints in human, mouse and rat
database summary
Mitochondrial DNA breakpoints in human, mouse and rat
database summary
MitoCarta Mootha, Vamsi K; Rath, Sneha; Sharma, Rohit; Gupta, Rahul; Ast, Tslil; Chan, Connie; Durham, Timothy; Goodman, Russell; Grabarek, Zenon; Haas, Mary; Hung, Wendy; Joshi, Pallavi; Jourdain, Alexis; Kim, Sharon; Kotrys, Anna; Lam, Stephanie; McCoy, Jason; Me
Mouse and human mitochondrial proteins
database summary
Mouse and human mitochondrial proteins
database summary
MitoDrome D’Elia D.1, Catalano D.1, Licciulli F.1, Turi A.1, Tripoli G.2, Porcelli D.2, Saccone C.2,3 and Caggese C.2
Drosophila nuclear-encoded proteins targeted to the mitochondrion
database summary
Drosophila nuclear-encoded proteins targeted to the mitochondrion
database summary
MitoGenesisDB Jean-Christophe Gelly 1,2,3, Mickael Orgeurp 2, Claude Jacq 4 and Gae‰lle Lelandais 1,2,3
Expression data to explore spatio-temporal dynamics of mitochondrial biogenesis
database summary
Expression data to explore spatio-temporal dynamics of mitochondrial biogenesis
database summary
MitoProteome
Mitochondrial protein sequences encoded by mitochondrial and nuclear genes
database summary
Mitochondrial protein sequences encoded by mitochondrial and nuclear genes
database summary
MMCD
A resource for metabolomics research based on nuclear magnetic resonance spectroscopy and mass spectrometry.
database summary
A resource for metabolomics research based on nuclear magnetic resonance spectroscopy and mass spectrometry.
database summary
MMDB Madej, Tom; Addess, Kenneth; Fong, Jessica; Geer, Lewis; Geer, Renata; Lanczycki, Christopher; Liu, Chunlei; Lu, Shennan; Marchler-Bauer, Aron; Panchenko, Anna; Chen, Jie; Thiessen, Paul; Wang, Yanli; Zhang, Dachuan; Bryant, Steve
All experimentally-determined 3D structures, linked to NCBI Entrez
database summary
All experimentally-determined 3D structures, linked to NCBI Entrez
database summary
mMGE Chen, Weihua; Lai, Senying; Jia, Longhao; Subramanian, Balakrishnan; Pan, Shaojun; Zhang, Jinglong; Dong, Yanqi; Zhao, Xing-Ming
Human metagenomic extrachromosomal mobile genetic elements
database summary
Human metagenomic extrachromosomal mobile genetic elements
database summary
MMP Willassen, Nils Peder; Klemetsen, Terje; Raknes, Inge Alexander; Fu, Juan; Agafonov, Aleksander.; Balasundaram, Sudhagar; Tartari, Giacomo; Robertsen, Espen
No description supplied
database summary
No description supplied
database summary
MMsINC
Database of commercially-available compounds for virtual screening and chemoinformatics
database summary
Database of commercially-available compounds for virtual screening and chemoinformatics
database summary
MNDR Wang, Dong; Ning, Lin; Cui, Tianyu; Zheng, Boyang; Wang, Nuo; Luo, Jiaxin; Yang, Beilei; Du, Mengze; Dou, Yiying
No description supplied
database summary
No description supplied
database summary
MNXref/MetaNetX Pagni, Marco; Moretti, Sébastien; Tran, Van Du; Mehl, Florence; Ibberson, Mark
Genome-scale metabolic networks
database summary
Genome-scale metabolic networks
database summary
MobiDB Tosatto, Silvio; Potenza, Emilio; Di Domenico, Tomas; Walsh, Ian
Intrinsically disordered and mobile proteins
database summary
Intrinsically disordered and mobile proteins
database summary
MobiDB Tosatto, Silvio; Piovesan, Damiano; Necci, Marco; escobedo, nahuel; Monzon, Alexander; Hatos, Andras; MiÄ\x8Detić, Ivan; Quaglia, Federica; Paladin, Lisanna; Ramasamy, Pathmanaban; Dosztanyi, Zsuzsanna,; Vranken, Wim; Davey, Norman; Parisi, Gustavo; Fuxreiter
Database of protein disorder and mobility annotations.
database summary
Database of protein disorder and mobility annotations.
database summary
MobiDB Tosatto, Silvio; Piovesan, Damiano; Del Conte, Alessio; Clementel, Damiano; Monzon, Alexander; Bevilacqua, Martina; Aspromonte, Maria Cristina; Iserte, Javier; Orti, Fernando; Marino-Buslje, Cristina
MobiDB: ten years of intrinsically disordered proteins
database summary
MobiDB: ten years of intrinsically disordered proteins
database summary
ModBase Pieper, U., Eswar, N., Stuart, A.C., Braberg, H., Madhusudhan, M.S., Davis, F., Rossi, A., Marti-Renom, M.A., Sali, A.
Annotated comparative protein structure models
database summary
Annotated comparative protein structure models
database summary
ModelSEED Samuel M D Seaver1, Filipe Liu1, Qizhi Zhang1, James Jeffryes1, José P Faria1, Janaka N Edirisinghe1, Michael Mundy2, Nicholas Chia2, Elad Noor3, Moritz E Beber4, Aaron A Best5, Matthew DeJongh6, Jeffrey A Kimbrel7, Patrik D’haeseleer7, Sean R McCorkle8, Jay R Bolton9, Erik Pearson9, Shane Canon9, Elisha M Wood-Charlson9, Robert W Cottingham10, Adam P Arkin9, Christopher S Henry1
The ModelSEED (https://modelseed.org) biochemistry database serves as the f
database summary
The ModelSEED (https://modelseed.org) biochemistry database serves as the f
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MODOMICS Bujnicki, Janusz; Boccaletto, Pietro; Stefaniak, Filip; Ray, Angana; Cappannini, Andrea; Mukherjee, Sunandan; Purta, Elzbieta; Durawa, Malgorzata; Shirvanizadeh, Niloofar; Destefanis, Eliana; Groza, Paula; Avşar, Gülben; Romitelli, Antonia; Pir, Pnar; Das
RNA modification pathways
database summary
RNA modification pathways
database summary
MODOMICS Bujnicki, Janusz; Cappannini, Andrea; Ray, Angana; Purta, Elzbieta; Mukherjee, Sunandan; Boccaletto, Pietro; Moafinejad, Seyed Naeim; Lechner, Antony; Barchet, Charles; Klaholz, Bruno; Stefaniak, Filip
MODOMICS: a database of RNA modifications and related information. 2023 update
database summary
MODOMICS: a database of RNA modifications and related information. 2023 update
database summary
MODOMICS Bujnicki, Janusz M.; Boccaletto, Pietro; Machnicka, Magdalena; Purta, Elzbieta; Piatkowski, Pawel; Baginski, Blazej; Wirecki, Tomasz; de Crecy-Lagard, Valerie; Ross, Robert; Limbach, Patrick; Kotter, Annika; Helm, Mark
No description supplied
database summary
No description supplied
database summary
MODOMICS Czerwoniec, A.1, Dunin-Horkawicz, S.2, Purta, E.3,4, Kaminska, K.H.3, Kasprzak, J.M.1, Bujnicki, J.M.1,3, Grosjean, H.5, and Rother, K.3
A database of RNA modification pathways
database summary
A database of RNA modification pathways
database summary
MolluscDB Wang, Shi; Liu, Fuyun; Li, Yuli; Yu, Hongwei; Zhang, Lingling; Hu, Jingjie; Bao, Zhenmin
Comparative genomics of molluscs
database summary
Comparative genomics of molluscs
database summary
MolMovDB - Database of Macromolecular Movements
Descriptions of protein and macromolecular motions, including movies
database summary
Descriptions of protein and macromolecular motions, including movies
database summary
Monarch Initiative Munoz-Torres, Monica (proxy) (contact); Putman, Tim; Schaper, Kevin; Matentzoglu, Nicolas; Rubinetti, Vincent; Alquaddoomi, Faisal; Cox, Corey; Caufiled, Harry; Elsarboukh, Glass; Gehrke, Sarah; Hegde, Harshad; Reese, Justin; Braun, Ian; Bruskiewich, Richard; Cappelletti, Luca; Carbon, Seth; Caron, Anita; Chan, Lauren; Chute, Christopher; Cortes, Katherina; De Souza, VinÃcius; Fontana, Tommaso; Harris, Nomi; Hartley, Emily; Hurwitz, Eric; Jacobsen, Julius; Krishnamurthy, Madan; Laraway, Bryan; McLaughlin, James; McMurry, Julie; Moxon, Sierra; Mullen, Kathleen; Oneil, Shawn; Shefchek, Kent; Stefancsik, Ray; Toro, Sabrina; Vasilevsky, Nicole; Walls, Ramona; Whetzel, Trish; Osumi-Sutherland, David; Smedley, Damian; Robinson, Peter; Mungall, Christopher; Haendel, Melissa
Human disease-related phenotypes in model organisms
database summary
Human disease-related phenotypes in model organisms
database summary
MonarchBase Zhan, S.1 and Reppert, S.M.1
Genome biology of the monarch butterfly Danaus plexippus
database summary
Genome biology of the monarch butterfly Danaus plexippus
database summary
MoonProt Mani, Mathew; Chen, Chang; Amblee, Vaishak; Liu, Haipeng; Mathur, Tanu; Zwicke, Grant; Zabad, Shadi; Patel, Bansi; Thakkar, Jagravi; Jeffery, Constance
Moonlighting proteins
database summary
Moonlighting proteins
database summary
MoonProt Chang Chen1,2, Haipeng Liu3, Shadi Zabad4, Nina Rivera5, Emily Rowin5, Maheen Hassan5, Stephanie M. Gomez De Jesus6, Paola S. Llinás Santos7, Karyna Kravchenko7, Mariia Mikhova8, Sophia Ketterer9, Annabel Shen9, Sophia Shen9, Erin Navas10, Bryan Horan10, Jaak Raudsepp9 and Constance Jeffery1,5
MoonProt 3.0 is an updated open-access database storing expert-curated anno
database summary
MoonProt 3.0 is an updated open-access database storing expert-curated anno
database summary
MOsDB Karlowski W.1, Schoof H.2,3, Spannagl M.2,3, Yang L.3 and Mayer K.F.X.3
MIPS Oryza sativa database
database summary
MIPS Oryza sativa database
database summary
Mouse Genome Database Blake, Judith; Baldarelli, Richard; Kadin, James; Richardson, Joel; Smith, Cynthia; Bult, Carol; Mouse Genome Database Group, MGD
No description supplied
database summary
No description supplied
database summary
Mouse Phenome Database Bogue, Molly; Grubb, Stephen; Walton, David; Philip, Vivek; Kolishovski, Georgi; Stearns, Tim; Dunn, Matthew H; Skelly, Daniel A; Kadakkuzha, Beena; TeHennepe, Gregg; Kunde-Ramamoorthy, Govind; Chesler, Elissa
The Mouse Phenome Database (MPD; https://phenome.jax.org) is a widely used
database summary
The Mouse Phenome Database (MPD; https://phenome.jax.org) is a widely used
database summary
Mouse Phenome Database Grubb, Stephen; Bult, Carol; Bogue, Molly
Phenotypic and genotypic data from inbred strains of mice
database summary
Phenotypic and genotypic data from inbred strains of mice
database summary
Mousebook Andrew Blake, Karen Pickford, Simon Greenaway, Steve Thomas, Amanda Pickard, Christine M. Williamson, Niels C. Adams, Alison Walling, Tim Beck, Martin Fray, Jo Peters, Tom Weaver, Steve D. M. Brown, John M. Hancock, and Ann-Marie Mallon
Mutant mouse lines held at MRC Harwell
database summary
Mutant mouse lines held at MRC Harwell
database summary
MouseNet Lee, Insuk; Kim, Eiru; Hwang, Sohyun; Kim, Hyojin; Shim, Hongsuk; Kang, Byunghee; Yang, Sunmo; Shim, Jae Ho; Shin, Seung Yeon; Marcotte, Edward
Functional network of mouse genes
database summary
Functional network of mouse genes
database summary
MP:PD Hildebrand, Peter; Rose, Alexander S; Theune, Dominic; Goede, Andrean
Membrane Proteins: Packing Densities, packing defects and internal water molecules
database summary
Membrane Proteins: Packing Densities, packing defects and internal water molecules
database summary
MPD Bogue, Molly; Ball, Robyn; Philip, Vivek; Walton, David; Dunn, Matthew H; Kolishovski, Georgi; Lamoureux, Anna; Liang, Hongping; Emerson, Jake; Stearns, Tim; He, Hao; Mukherjee, Gaurab.; Bluis, John; Desai, Sejal; Sundberg, Beth; Kadakkuzha, Beena; Kunde-
Mouse Phenome Database: Towards a more FAIR-compliant and TRUST-worthy data
database summary
Mouse Phenome Database: Towards a more FAIR-compliant and TRUST-worthy data
database summary
MPDB - Molecular Probe Database Marra, D., Romano, P.
Information on synthetic oligonucleotides proven useful as primers or probes
database summary
Information on synthetic oligonucleotides proven useful as primers or probes
database summary
MPIM - Mitochondrial Protein Import Machinery
Mitochondrial protein import machinery of plants
database summary
Mitochondrial protein import machinery of plants
database summary
MRPrimerV Kim, Min-Soo; Kim, Hyerin; Kang, Nana; An, KyuHyeon; Kim, Doyun; Koo, JaeHyung
PCR primer pairs for detecting RNA virus-mediated infectious diseases
database summary
PCR primer pairs for detecting RNA virus-mediated infectious diseases
database summary
MSDB: a comprehensive, annotated database of microsatellites Avvaru, Akshay Kumar;Sharma, Deepak;Verma, Archana;Mishra, Rakesh K;Sowpati, Divya Tej
No description supplied
database summary
No description supplied
database summary
MSDD Li, Xia; Yue, Ming; Zhou, Dianshuang; Zhi, Hui'; Wang, Peng,.; Zhang, Yan *; Gao, Yue'; Guo, Maoni; Li, Xin,; Wang, Yanxia; Zhang, Yunpeng; Ning, Shangwei
No description supplied
database summary
No description supplied
database summary
mSignatureDB Tang, Petrus; Huang, Po-Jung; Chiu, Ling-Ya; Lee, Chi -Ching; Yeh, Yuan-Ming; Huang, Kuo-Yang; Chiu, Cheng-Hsun
Cancer is a genetic disease caused by somatic mutations; however, the under
database summary
Cancer is a genetic disease caused by somatic mutations; however, the under
database summary
msRepDB Gao, Xin; Liao, Xingyu; Hu, Kang; Salhi, Adil; Zou, You; Wang, Jianxin,
multi-species Repeat DataBase
database summary
multi-species Repeat DataBase
database summary
MtbRegList Jacques P.E.1,2, Gervais A.L.1,2, Cantin M.2, Lucier J.F.3, Dallaire G.2, Drouin G.1, Gaudreau L.1, Goulet J.2 and Brzezinski R.1
Gene expression in Mycobacterium tuberculosis
database summary
Gene expression in Mycobacterium tuberculosis
database summary
MUGEN Mouse Database
Murine models of immune processes and immunological diseases14
database summary
Murine models of immune processes and immunological diseases14
database summary
MulPSSM Ramakrishnan G., Mohanty S., Krishnadev O. and Srinivasan N.
A searchable database of multiple position specific scoring matrices of protein domain families.
database summary
A searchable database of multiple position specific scoring matrices of protein domain families.
database summary
MultifacetedProtDB Martelli, Pier Luigi; Bertolini, Elisa; Babbi, Giulia; Savojardo, Castrense; Casadio, Rita
MultifacetedProtDB: a database of human proteins with multiple functions
database summary
MultifacetedProtDB: a database of human proteins with multiple functions
database summary
MultiTaskDB Querol, Enrique; Hernández, Sergio; Ferragut, Gabriela; Amela, Isaac; Perez-Pons, JosepAntoni; Piñol, Jaume; Mozo-Villarias, Angel; Cedano, Juan
Moonlighting Proteins DataBase
database summary
Moonlighting Proteins DataBase
database summary
MultitaskProtDB-II Querol, Enrique; Franco, LuÃÂs; Hernández, Sergio; Calvo, Alejandra; Seveni, MarÃÂaÃ\x81ngela; Ferragut, Gabriela; Perez-Pons, JosepAntoni; Piñol, Jaume; Pich, Oscar; Mozo-Villarias, Angel; Amela, Isaac; Cedano, Juan
No description supplied
database summary
No description supplied
database summary
MutationAligner Miller, Martin; Gauthier, Nicholas; Reznik, Ed; Gao, JianJiong; Sumer, Selcuk; Schultz, Nikolaus; Sander, Chris
Somatic mutation hotspots in protein domains in cancer
database summary
Somatic mutation hotspots in protein domains in cancer
database summary
MutDB
Predicted biochemical effects of human genetic variation: maping of SNPs on protein sequence and structure
database summary
Predicted biochemical effects of human genetic variation: maping of SNPs on protein sequence and structure
database summary
mutLBSgeneDB Zhao, Zhongming; Kim, Pora; Zhao, Junfei; Lu, Pinyi
Mutations in Ligand Binding Sites gene DataBase
database summary
Mutations in Ligand Binding Sites gene DataBase
database summary
MutSpliceDB Alida Palmisano; Dmitriy Sonkin
MutSpliceDB: A database of splice sites variants with RNA-seq based evidenc
database summary
MutSpliceDB: A database of splice sites variants with RNA-seq based evidenc
database summary
MVIP Zhou, Yu; Tang, Zhidong; Fan, Weiliang; Li, Qiming; Wen, Miaomiao; Li, Xingqiao; Wang, Junhao
Multi-omics Portal of Viral Infection
database summary
Multi-omics Portal of Viral Infection
database summary
MvirDB Zhou C.E.Z., Smith J., Lam M.W., Zemla A.T., Dyer M. and Slezak T.
Protein toxins, virulence factors, and antibiotic resistance genes
database summary
Protein toxins, virulence factors, and antibiotic resistance genes
database summary
mVOC Piechulla, Birgit; Lemfack, Chantal; nickel, janette; Dunkel, Mathias; Preissner, Robert
Microbial Volatile Organic Compounds
database summary
Microbial Volatile Organic Compounds
database summary
mVOC Preissner, Robert; Lemfack, Chantal; Gohlke, Björn; Toguem, Serge; Preissner, Saskia; Piechulla, Birgit
No description supplied
database summary
No description supplied
database summary
MVP Chen, Weihua; Gao, Na L; Zhang, Chengwei; Zhang, Zhanbing; Hu, Songnian; Lercher, Martin; Zhao, Xing-Ming; Bork, Peer; Liu, Zhi
Phages invade microbes, accomplish host lysis and are of vital importance i
database summary
Phages invade microbes, accomplish host lysis and are of vital importance i
database summary
MycoCosm Grigoriev, Igor; Nikitin, Roman; Harids, Sajeet; Kuo, Alan; Ohm, Robin; Otillar, Robert; Riley, Robert; Salamov, Asaf; Zhao, Xueling; Korzeniewski, Frank; Smirnova, Tatyana; Nordberg, Henrik; Dubchak, Inna; Shabalov, Igor
Genomics resources of the DOE Joint Genome Institute
database summary
Genomics resources of the DOE Joint Genome Institute
database summary
NACDDB Wien, Frank; Cappannini, Andrea; Mosca, Kevin; Mukherjee, Sunandan; Moafinejad, Seyed Naeim; Sinden, Richard; Arluison, Veronique,; Bujnicki, Janusz M.
Nucleic Acid Circular Dichroism Database
database summary
Nucleic Acid Circular Dichroism Database
database summary
NAKB Lawson, Catherine; Berman, Helen; Chen, Li; Vallat, Brinda; Zirbel, Craig
The Nucleic Acid Knowledgebase: A New Portal for 3D Structural Information about Nucleic Acids
database summary
The Nucleic Acid Knowledgebase: A New Portal for 3D Structural Information about Nucleic Acids
database summary
Nanobase.org Sulc, Petr; Poppleton, Erik; Mallya, Aatmik; Dey, Swarup; Joseph, Joel
DNA, RNA or protein-DNA/RNA hybrid nanostructures
database summary
DNA, RNA or protein-DNA/RNA hybrid nanostructures
database summary
National Genomics Data Center Bao, Yi-Ming; Zhang, Zhang; Zhao, Wen-Ming; Xiao, Jingfa; He, Shunmin; Zhang, Guoqing; Li, Yixue; Zhao, Guoping2; Chen, Runsheng
Database Resources of the National Genomics Data Center
database summary
Database Resources of the National Genomics Data Center
database summary
NATsDB Yong Zhang1, Jiongtang Li1, Lei Kong1, Ge Gao1, Qing-Rong Liu2 and Liping Wei1
Natural Antisense Transcripts DataBase
database summary
Natural Antisense Transcripts DataBase
database summary
NBDB Berezovsky, Igor; Zheng, Zejun; Goncearenco, Alexander
Nucleotide Binding DataBase: nucleotide binding signatures
database summary
Nucleotide Binding DataBase: nucleotide binding signatures
database summary
NCATS Inxight: Drugs Southall, Noel; Siramshetty, Vishal; Grishagin, Ivan; Nguyen, Dac-Trung; Peryea, Tyler; Skovpen, Yulia; Stroganov, Oleg; Katzel, Daniel; Sheils, Timothy; Jadhav, Ajit; Mathé, Ewy
Drugs, their properties and regulation
database summary
Drugs, their properties and regulation
database summary
NCBI BioSample/BioProject Ilene Mizrachi
BioProject and BioSample databases at NCBI
database summary
BioProject and BioSample databases at NCBI
database summary
NCBI BioSystems Lewis Y. Geer, Aron Marchler-Bauer, Renata C. Geer, Lianyi Han, Jane He, Siqian He, Chunlei Liu, Wenyao Shi, and Stephen H. Bryant
Biological pathways with associated literature, molecular, sequence, and chemical data
database summary
Biological pathways with associated literature, molecular, sequence, and chemical data
database summary
NCBI Protein database
All protein sequences: translated from GenBank and imported from other protein databases
database summary
All protein sequences: translated from GenBank and imported from other protein databases
database summary
NCBI Taxonomy Federhen, Scott
The NCBI Taxonomy Database includes names and classifications for all of th
database summary
The NCBI Taxonomy Database includes names and classifications for all of th
database summary
NCIR - Non-Canonical Interactions in RNA Nagaswamy, U., Huang, H-C., Larios-Sanz, M., Wang, J., Zhao, Q., Fox, G.E.
Non-standard base-base interactions in known RNA structures
database summary
Non-standard base-base interactions in known RNA structures
database summary
ncRNADrug Xinyu Cao, Xu Zhou, Fei Hou, Yu-e Huang, Mengqin Yuan, Min Long, Sina Chen, Wanyue Lei, Jicun Zhu, Jiahao Chen, Tao Zhang, An-Yuan Guo, and Wei Jiang
ncRNADrug: a database for validated and predicted ncRNAs associated with drug resistance and targeted by drugs
database summary
ncRNADrug: a database for validated and predicted ncRNAs associated with drug resistance and targeted by drugs
database summary
ncRNAs database Szymanski, M.1, Erdmann, V.A.2, Barciszewski, J.1
Noncoding RNAs with regulatory functions
database summary
Noncoding RNAs with regulatory functions
database summary
NDB Berman, Helen; Coimbatore Narayanan, Buvna; Westbrook, John; Ghosh, Saheli; Petrov, Anton I.; Sweeney, Blake; Zirbel, Craig; Leontis, Neocles
Nucleic acid-containing structures
database summary
Nucleic acid-containing structures
database summary
NECTAR Gong, Sungsam; Ware, James; Walsh, Roddy; Cook, Stuart
Disease-related non-synonymous mutations
database summary
Disease-related non-synonymous mutations
database summary
Negatome Frishman, Dmitrij; Blohm, Philipp; Frishman, Goar; Smialowski, Pawel; Goebels, Florian; Wachinger, Benedikt; Ruepp, Andreas
A database of non-interacting proteins
database summary
A database of non-interacting proteins
database summary
NEIBank Wistow G.1, Peterson K.1, Gao J.1, Buchoff P.1, Hauser M.A.2, Bowes Rickman C.3 and Hoover D.4
EyeSAGE, EyeBrowse and Eye Disease Gene Databases
database summary
EyeSAGE, EyeBrowse and Eye Disease Gene Databases
database summary
NEMO Archive Ament, Seth; Adkins, Ricky; Carter, Robert; Chrysostomou, Elena; Colantuoni, Carlo; Crabtree, Jonathan; Creasy, Heather; Degatano, Kylee; Felix, Victor; Gandt, Peter; Garden, Gwenn; Giglio, Michelle; Herb, Brian; Khajouei, Farzaneh; Kiernan, Elizabeth; Mc
Neuroscience Multi-Omic Archive
database summary
Neuroscience Multi-Omic Archive
database summary
NESbase la Cour, T.2, Gupta, R.1, Rapacki, K.1, Skriver, K.2, Poulsen, F. M.2, Brunak, S.1
Nuclear export signals
database summary
Nuclear export signals
database summary
Network of Cancer Genes An, O.1, Pendino, V.1, D'Antonio, M.1, Ratti, E.1, Gentilini, M.1, Ciccarelli, F.1,2
Network properties of cancer genes
database summary
Network properties of cancer genes
database summary
Network Portal Baliga, Nitin; Turkarslan, Serdar; Wurtmann, Elisabeth; Wu, Wei-Ju; Jiang, Ning; Bare, J; Foley, Karen; Novichkov, Pavel
A database of gene transcription regulatory networks
database summary
A database of gene transcription regulatory networks
database summary
NetwoRx Kristen Fortney
Chemogenomic experiments in yeast: connection of drug response to biological pathways, phenotypes, and networks
database summary
Chemogenomic experiments in yeast: connection of drug response to biological pathways, phenotypes, and networks
database summary
NeXO Dutkowski, Janusz; Ono, Keiichiro; Kramer, Michael; Yu, Michael; Pratt, Dexter; Demchak, Barry; Ideker, Trey
Network Extracted gene Ontology database
database summary
Network Extracted gene Ontology database
database summary
neXtProt Zahn-Zabal, Monique; Michel, Pierre-André; Gateau, Alain; Nikitin, Frédéric; Schaeffer, Mathieu; Audot, Estelle; Gaudet, Pascale; Duek, Paula D; Teixeira, Daniel; Rech de Laval, Valentine; Samarasinghe, Kasun; Bairoch, Amos; Lane, Lydie
Knowledge platform centered on human proteins
database summary
Knowledge platform centered on human proteins
database summary
NGSmethDB Oliver, Jose; Geisen, Stefanie; Barturen, Guillermo; Alganza, Ã\x81ngel; Hackenberg, Michael
Next-generation sequencing single-cytosine-resolution DNA methylation data
database summary
Next-generation sequencing single-cytosine-resolution DNA methylation data
database summary
NHPRTR Peng, Xinxia; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Nishida, Andrew; Pipes, Lenore; Bozinoski, Marjan; Thomas, Matthew; Kelly, Sara; Weiss, Jeffrey; Raveendran, Muthuswamy; Muzny, Donna; Gibbs, Richard; Rogers, Jeffrey; Schroth, Gary; Katze, Michael; Mason, Christopher
Nonhuman Primate Reference Transcriptome Resource
database summary
Nonhuman Primate Reference Transcriptome Resource
database summary
NIAS Masaru Takeya 1, Fukuhiro Yamasaki 1, Shihomi Uzuhashi 2, Takayuki Aoki 1Hiroyuki Sawada 1, Toshirou Nagai 1, Keisuke Tomioka 1, Norihiko Tomooka 1,Toyozo Sato 1 and Makoto Kawase 1
Databases for genetic resources and plant disease information
database summary
Databases for genetic resources and plant disease information
database summary
NLRscape Petrescu, Andrei; Martin, Eliza; Ion, Catalin F.; Ifrimescu, Florin; Spiridon, Laurentiu; Bakker, Jaap; Goverse, Aska
Plant Nod-like receptors
database summary
Plant Nod-like receptors
database summary
NLSdb Bernhofer, Michael; Goldberg, Tatyana; Wolf, Silvana; Ahmed, Mohamed; Zaugg, Julian; Boden, Mikael; Rost, Burkhard
No description supplied
database summary
No description supplied
database summary
NMDC Data Portal Eloe-Fadrosh, Emiley; Ahmed, Faiza; Anubhav, Anubhav; Babinski, Michal; Baumes, Jeffrey; Beezley, Jonathan; Borkum, Mark; Bramer, Lisa; Canon, Shane; Christianson, Danielle; Corilo, Yuri; Davenport, Karen; Davis, Brandon; Drake, Meghan; Duncan, William; F
Multi-omics microbiome data
database summary
Multi-omics microbiome data
database summary
NMPdb - Nuclear matrix associated proteins database
Nuclear matrix associated proteins database
database summary
Nuclear matrix associated proteins database
database summary
NMPFamsDB Pavlopoulos, Georgios; Baltoumas, Fotis; Karatzas, Evangelos; Liu, Sirui; Ovchinikov, Sergey; Sofianatos, Yorgos; Chen, I-Min; Kyrpides, Nikos
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
database summary
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
database summary
NNDB Douglas H. Turner and David H. Mathews
Nearest Neighbor parameters for predicting RNA folding
database summary
Nearest Neighbor parameters for predicting RNA folding
database summary
non-B DB Regina Z. Cer, Kevin H. Bruce, Uma S. Mudunuri, Ming Yi, Natalia Volfovsky, Brian T. Luke, Albino Bacolla, Jack R. Collins, and Robert M. Stephens
non-B DNA forming motifs in mammalian genomes
database summary
non-B DNA forming motifs in mammalian genomes
database summary
NONCODE Zhao, Yi; Zhao, LianHe; Wang, Jiajia; Li, Yanyan .; Song, Tingrui; Wu, Yang; Fang, ShuangSang; Bu, Dechao; Li, Hui; Sun, Liang.; Pei, Dong; Zheng, Yu; Huang, Jianqin; Chen, Runsheng; He, Shunmin
A database of noncoding RNAs
database summary
A database of noncoding RNAs
database summary
NONCODEv5 Zhao, Yi; fang, shuangsang; Zhang, Lili; Guo, Jin-Cheng; Niu, Yiwei; Wu, Yang; Zhao, LianHe; Li, XiYuan; Li, Hui; Teng, XveYi; Sun, XianHui; Sun, Liang; Chen, Runsheng
No description supplied
database summary
No description supplied
database summary
NOPdb: Nucleolar Proteome Database Leung A.K.1, Trinkle-Mulcahy L2. and Lamond, A.I.2
Nucleolar proteome database
database summary
Nucleolar proteome database
database summary
NP-MRD Wishart, David; Sayeeda, Zinat; Budinsky, Zachary; Guo, An Chi; Lee, Brian; Berjanskii, Mark; Rout, Manoj; Peters, Harrison; Dizon, Raynard; Mah, Robert; Torres-Calzada, Claudia; Hiebert-Giesbrecht, Mickel; Varshavi, Dorna; Varshavi, Dorsa; Oler, Eponine;
Natural Products Magnetic Resonance Database
database summary
Natural Products Magnetic Resonance Database
database summary
NPACT Subhash Agarwal
Naturally occuring Plant based Anticancerous Compound Targets
database summary
Naturally occuring Plant based Anticancerous Compound Targets
database summary
NPASS Chen, Yu-Zong; Zeng, Xian; Zhang, Peng,,; He, Wei Dong; Qin, Chu; Chen, Shangying; Tao, Lin; Wang, Yali; Tan, Ying; Gao, Dan; Wang, Bo Hua; Chen, Zhe; Chen, Wei Ping; Jiang, Yuyang
No description supplied
database summary
No description supplied
database summary
NPASS Zhao, Hui; Chen, Yu Zong; Yang, Yuan; Wang, Shuaiqi; Yang, Xue; Zhou, Kaicheng; Zhang, Xuyao; Hou, Dongyue; Li, Xingxiu; Lin, Hanbo; Fan, Jiajun; Tan, Ying'; Wang, Shanshan; Zhuoma, Dongzhi; Zhang, Fengying; Zeng, Xian; Ju, Dianwen; Chu, Xinyi
NPASS database update 2023: quantitative natural product activity and speci
database summary
NPASS database update 2023: quantitative natural product activity and speci
database summary
NPAtlas Linington, Roger; van Santen, Jeffrey; Poynton, Ella; Iskakova, Dasha; McMann, Emily; Alsup, Tyler; Clark, Trevor; Fergusson, Claire; Fewer, David; Hughes, Alison; McCadden, Caitlin; Parra Villalobos, Jonathan; Soldatou, Sylvia; Rudolf, Jeffrey; Janssen,
Natural Products Atlas
database summary
Natural Products Atlas
database summary
NPCDR SUI, Xinbing; SUN, Xueni; ZHANG, Yintao; ZHOU, Ying; LIAN, Xichen; YAN, Lili; PAN, Ting; JIN, Ting; XIE, Han; LIANG, Zimao; QIU, Wenqi; WANG, Jianxin; LI, Zhaorong; Zhu, Feng
Drug-Natural Product combinations and diseases
database summary
Drug-Natural Product combinations and diseases
database summary
NPD - Nuclear Protein Database Dellaire, G.1, Farrall, R.2, Bickmore, W.A.2
Proteins localized in the nucleus
database summary
Proteins localized in the nucleus
database summary
NPIDB (Nucleic acids – Protein Interaction DataBase) Sergei Spirin
Database of structures of nucleic acid - protein complexes
database summary
Database of structures of nucleic acid - protein complexes
database summary
NPInter Zheng, Yu; Luo, Huaxia,; Teng, XueYi; Hao, Xinpei; Yan, Xiaoyu; Tang, Yiheng; Zhang, Wanyu; Wang, Yuanxin; Zhang, Peng; Li, Yanyan; Chen, Runsheng; He, Shunmin
NPInter v5.0: ncRNA interaction database in new era
database summary
NPInter v5.0: ncRNA interaction database in new era
database summary
NPInter Wu T.1,3, Wang J.1,3, Liu C.2,3, Zhang Y.1,3, Shi B.1,3, Zhu X.1,3, Zhang Z.1,3, SkogerbØ G.1, Chen L.2,3, Lu H.2,3, Zhao Y.2 and Chen R.1,2
Noncoding RNA-protein interactions
database summary
Noncoding RNA-protein interactions
database summary
NPInter v4.0: an integrated database of ncRNA interactions Teng, Xueyi;Chen, Xiaomin;Xue, Hua;Tang, Yiheng;Zhang, Peng;Kang, Quan;Hao, Yajing;Chen, Runsheng;Zhao, Yi;He, Shunmin
No description supplied
database summary
No description supplied
database summary
NPRD - Nucleosome Positioning Region Database
Nucleosome positioning region database
database summary
Nucleosome positioning region database
database summary
NRichD Richa Mudgal1, Sankaran, Sandhya2, Gayatri Kumar3, Ramanathan Sowdhamini4, Nagasuma R Chandra2 and Narayanaswamy Srinivasan3
Sequence databases enriched with computationally designed protein-like sequences
database summary
Sequence databases enriched with computationally designed protein-like sequences
database summary
NSDNA Wang, Lihua; Wang, Jianjian; Cao, Yuze; Zhang, Huixue; Wang, Tianfeng; Tian, Qinghua; Lu, Xiaoyu; Lu, Xiaoyan; Kong, Xiaotong; Liu, Zhaojun; Wang, Ning; Zhang, Shuai; Ma, Heping; Ning, Shangwei
Nervous System Disease NcRNAome Atlas
database summary
Nervous System Disease NcRNAome Atlas
database summary
NucleaRDB Vroling, Bas; Thorne, David; McDermott, Philip; Joosten, Henk-Jan; Attwood, Teresa; Pettifer, Steve; Vriend, Gert
Nuclear receptor superfamily
database summary
Nuclear receptor superfamily
database summary
Nucleome Data Bank Onuchic, José; CONTESSOTO, VINICIUS; Cheng, Ryan; Hajitaheri, Arya; Rojas, Esteban; Mello, Matheus; Aiden, Erez; Wolynes, Peter; Di Pierro, Michele
3D genome structures and simulations
database summary
3D genome structures and simulations
database summary
NucMap: a database of genome-wide nucleosome positioning map across species Zhao, Yongbing;Wang, Jinyue;Liang, Fang;Liu, Yanxia;Wang, Qi;Zhang, Hao;Jiang, Meiye;Zhang, Zhewen;Zhao, Wenming;Bao, Yiming;Zhang, Zhang;Wu, Jiayan;Asmann, Yan W;Li, Rujiao;Xiao, Jingfa
No description supplied
database summary
No description supplied
database summary
NutriChem Jensen, Kasper; Panagiotou, Gianni; Kouskoumvekaki, Irene
Nutritional and medicinal value of plant-based foods
database summary
Nutritional and medicinal value of plant-based foods
database summary
O-GLYCBASE Julenius, K., Rapacki, K., Brunak, S., Gupta, R.
O- and C-linked glycosylation sites in proteins
database summary
O- and C-linked glycosylation sites in proteins
database summary
ODB - Operon database Okuda S.1, Katayama T.2, Kawashima S.2, Goto S.1 and Kanehisa M.1
Operon database
database summary
Operon database
database summary
OGEE Chen, Weihua; Gurumayum, Sanathoi; Jiang, Puzi; Hao, Xiaowen; Campos, Tulio; Young, Neil; Korhonen, Pasi; Gasser, Robin; Bork, Peer; Zhao, Xing-Ming; He, Lijie
Online GEne Essentiality database
database summary
Online GEne Essentiality database
database summary
OGRDB William Lees1, Christian E. Busse2, Martin Corcoran3, Mats Ohlin4, Cathrine Scheepers5,6, Frederick A. Matsen, IV7, Gur Yaari8, Corey T. Watson9, Andrew Collins10, and Adrian J. Shepherd1
OGRDB is a curated database of immunoglobulin and T cell receptor sequences
database summary
OGRDB is a curated database of immunoglobulin and T cell receptor sequences
database summary
OGRe - Organellar Genome Retrieval Tang B., Xu W., Jameson D., Higgs P.
Mitochondrial genome sequences, gene orders and codon usage tables
database summary
Mitochondrial genome sequences, gene orders and codon usage tables
database summary
OKCAM - now available at RhesusBase
Ontology-based Knowledgebase for Cell Adhesion Molecules
database summary
Ontology-based Knowledgebase for Cell Adhesion Molecules
database summary
OlfactionBase Varadwaj, Pritish; Sharma, Anju; Saha, Bishal; Kumar, Rajnish
Odors, Odorants and Olfactory Receptors
database summary
Odors, Odorants and Olfactory Receptors
database summary
OligoArrayDb
Pangenomic sets of microarray probes for organisms with fully sequenced genomes
database summary
Pangenomic sets of microarray probes for organisms with fully sequenced genomes
database summary
OMA Dessimoz, Christophe; Altenhoff, Adrian; Train, Clément-Marie; Gilbert, Kimberly; Mediratta, Ishita; Mendes de Farias, Tarcisio; Moi, David; Nevers, Yannis; Radoykova, Hale-Seda; Rossier, Victor; Warwick Vesztrocy, Alex; Glover, Natasha
Orthologies across >2000 genomes
database summary
Orthologies across >2000 genomes
database summary
OMA Altenhoff, Adrian; Skunca, Nives; Glover, Natasha; Train, Clément-Marie; Sueki, Anna; Piližota, Ivana; Gori, Kevin; Tomiczek, Bartlomiej; Müller, Steven; Redestig, Henning; Gonnet, Gaston; Dessimoz, Christophe
Orthology MAtrix
database summary
Orthology MAtrix
database summary
OMA Orthology Glover, Natasha; Altenhoff, Adrian; Warwick Vesztrocy, Alex; Train, Clement; Nicheperovich, Alina; Prieto Baños, Silvia; Julca, Irene; Moi, David; Nevers, Yannis; Majidian, Sina; Dessimoz, Christophe; Bernard, Charles
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
database summary
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
database summary
OMIA - Online Mendelian Inheritance in Animals Nicholas F.W.
Catalog of animal genetic and genomic disorders
database summary
Catalog of animal genetic and genomic disorders
database summary
OMPdb Konstantinos D. Tsirigos 1, Pantelis G. Bagos 2 and Stavros J. Hamodrakas 1
Beta-barrel outer membrane proteins from Gram-negative bacteria
database summary
Beta-barrel outer membrane proteins from Gram-negative bacteria
database summary
OncoDB Wang, Xiaowei; Tang, Gongyu; Cho, Minsu
Gene Expression and Viral Infection in Cancer
database summary
Gene Expression and Viral Infection in Cancer
database summary
OncoDB.HCC Su WH, Chao CC, Yeh SH, Chen DS, Chen PJ, Jou YS
Oncogenomic database of hepatocellular carcinoma
database summary
Oncogenomic database of hepatocellular carcinoma
database summary
OncoSplicing Xu, Hua; Zhang, Yangjun; Yao, Xiangyang; Zhou, Hui'.; Wu, Xiaoliang; Tian, Jianbo; Zeng, Jin; Yan, Libin; Duan, Chen; Liu, Haoran,; Li, Heng '.; Chen, Ke; Hu, Zhiquan; Ye, Zhangqun
Alternative splicing and cancer
database summary
Alternative splicing and cancer
database summary
OncoVar Mao, Fengbiao,; Wang, Tao21; Zhao, Xiaolu; Zhong, Jianing; Shi, Xiaohui; Teng, Huajing.; Ruan, Shasha; You, Mingcong; Sun, Zhongsheng
Driver mutations, genes and pathways in cancer
database summary
Driver mutations, genes and pathways in cancer
database summary
ONQUADRO Szachniuk, Marta; Zok, Tomasz; Kraszewska, Natalia; Miskiewicz, Joanna; Pielacinska, Paulina; Zurkowski, Michal
DNA and RNA quadruplexes
database summary
DNA and RNA quadruplexes
database summary
OnTheFly Shazman, Shula; Lee, Hunjoong; Socol, Yakov; Mann, Richard S.; Honig, Barry
DNA-binding specificities of transcription factors in Drosophila
database summary
DNA-binding specificities of transcription factors in Drosophila
database summary
Ontobee Edison Ong1, Zuoshuang Xiang1, Bin Zhao1, Yue Liu1, Yu Lin1, Jie Zheng2, Chris Mungall3, Mélanie Courtot5, Alan Ruttenberg5, Yongqun He1
Ontology database server of OBO Foundry
database summary
Ontology database server of OBO Foundry
database summary
Open Genes Rafikova, Ekaterina; Nemirovich-Danchenko, Nikolay; Ogmen, Anna; Parfenenkova, Anna; Velikanova, Anastasiia; Tikhonov, Stanislav; Peshkin, Leonid; Rafikov, Konstantin; Spiridonova, Olga; Belova, Yulia; Glinin, Timofey; Egorova, Anastasia; Batin, Mikhail
Open Genes — A New Comprehensive Database of Human Genes Associated With Aging and Longevity
database summary
Open Genes — A New Comprehensive Database of Human Genes Associated With Aging and Longevity
database summary
Open Proteomics Database
Mass-spectrometry-based proteomics data for human, yeast, E.coli and Mycobacterium
database summary
Mass-spectrometry-based proteomics data for human, yeast, E.coli and Mycobacterium
database summary
Open Targets Ochoa, David; Hercules, Andrew; Carmona, Miguel; Suveges, Daniel; Baker, Jarrod; Malangone, Cinzia; Lopez, Irene; Miranda, Alfredo; Cruz-Castillo, Carlos; Fumis, Luca; Bernal-Llinares, Manuel; Tsukanov, Kirill; Cornu, Helena; Tsirigos, Konstantinos; Razuv
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
database summary
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
database summary
Open Targets David Ochoa1,2, Andrew Hercules1,2, Miguel Carmona1,2, Daniel Suveges1,2, Asier Gonzalez-Uriarte1,2, Cinzia Malangone1,2, Alfredo Miranda1,2, Luca Fumis1,2, Denise Carvalho-Silva1,2, Michaela Spitzer1,2, Jarrod Baker1,2, Javier Ferrer1,2, Arwa Raies1,2, Olesya Razuvayevskaya1,2, Adam Faulconbridge1,2, Eirini Petsalaki1,2, Prudence Mutowo2,3, Sandra Machlitt-Northen2,3, Gareth Peat1,2, Elaine McAuley1,2, Chuang Kee Ong1,2, Edward Mountjoy2,4, Maya Ghoussaini2,4, Andrea Pierleoni1,2, Eliseo Papa2,5, Miguel Pignatelli1,2, Gautier Koscielny2,3, Mohd Karim2,4, Jeremy Schwartzentruber2,4, David G. Hulcoop2,3, Ian Dunham1,2,4 and Ellen M. McDonagh1,2
Target Validation platform: links between potential drug targets and diseases
database summary
Target Validation platform: links between potential drug targets and diseases
database summary
Open Targets Gautier Koscielny; Peter An; Denise Carvalho-Silva; Jennifer A. Cham; Luca Fumis; Rippa Gasparyan; Samiul Hasan; Nikiforos Karamanis; Michael Maguire; Eliseo Papa; Andrea Pierleoni; Miguel Pignatelli; Theo Platt; Francis Rowland; Priyanka Wankar; A. Patricia Bento; Tony Burdett; Antonio Fabregat; Simon Forbes; Anna Gaulton; Cristina Yenyxe Gonzalez; Henning Hermjakob; Anne Hersey; Steven Jupe; Senay Kafkas; Maria Keays; Catherine Leroy; Francisco-Javier Lopez; Maria Paula Magarinos; James Malone; Johanna McEntyre; Alfonso Munoz-Pomer Fuentes; Claire O'Donovan; Irene Papatheodorou; Helen Parkinson; Barbara Palka; Justin Paschall; Robert Petryszak; Naruemon Pratanwanich; Sirarat Sarntivijal; Gary Saunders; Konstantinos Sidiropoulos; Thomas Smith; Zbyslaw Sondka; Oliver Stegle; Y. Amy Tang; Edward Turner; Brendan Vaughan; Olga Vrousgou; Xavier Watkins; Maria-Jesus Martin; Philippe Sanseau; Jessica Vamathevan; Ewan Birney; Jeffrey Barrett; Ian Dunham
Open Targets has designed and developed a data integration and visualizatio
database summary
Open Targets has designed and developed a data integration and visualizatio
database summary
Open Targets Genetics Dunham, Ian; Ghoussaini, Maya; Mountjoy, Edward; Carmona, Miguel; Peat, Gareth; Schmidt, Ellen; Hercules, Andrew; Fumis, Luca; Miranda, Alfredo; Carvalho-Silva, Denise; Buniello, Annalisa; Burdett, Tony; Hayhurst, James D; Baker, Jarrod; Ferrer, Javier; G
Drug targets prioritised from genetic data
database summary
Drug targets prioritised from genetic data
database summary
Open TG-GATEs Yamada, Hiroshi; Igarashi, Yoshinobu; Nakatsu, Noriyuki; Yamashita, Tomoya; Ono, Atsushi; Ohno, Yasuo; Urushidani, Tetsuro
Gene expression and toxicology data for rat liver and human and rat hepatocytes
database summary
Gene expression and toxicology data for rat liver and human and rat hepatocytes
database summary
OpenProt Roucou, Xavier; Leblanc, Sébastien; Yala, Feriel; Lucier, Jean-François; Levesque, Maxime; Provencher, Nicolas; Lapointe, Xavier; Jacques, Jean-François; Fournier, Isabelle; Salzet, Michel; Ouangraoua, Aida; Scott, Michelle; Boisvert, Francois-Michel; Brunet, Marie
OpenProt 2.0 builds a path to the functional characterization of alternative proteins
database summary
OpenProt 2.0 builds a path to the functional characterization of alternative proteins
database summary
OpenTein Nakai, Kenta; Park, Sung-Joon; Komiyama, Yusuke; Suemori, Hirofumi; Umezawa, Akihiro
Open Teratoma Investigation: images of teratomas derived from stem cells
database summary
Open Teratoma Investigation: images of teratomas derived from stem cells
database summary
OPIA Song, Shuhui; Cao, Yongrong; Tian, Dongmei; Tang, Zhixin; Liu, Xiaonan; Hu, Weijuan; Zhang, Zhang
OPIA: an open archive of plant images and related phenotypic traits
database summary
OPIA: an open archive of plant images and related phenotypic traits
database summary
ORENZA Lespinet O. and Labedan B.
Web resource for studying ORphan ENZyme Activities
database summary
Web resource for studying ORphan ENZyme Activities
database summary
Organ System Heterogeneity DB Campillos, Monica; Mannil, Deepthi; Vogt, Ingo; Prinz, Jeanette
Phenotypic effects of diseases and drugs on different organs
database summary
Phenotypic effects of diseases and drugs on different organs
database summary
Organelle DB Wiwatwattana N., Landau C., Cope G.J., Harp G., and Kumar A.
Organelle proteins and subcellular structures
database summary
Organelle proteins and subcellular structures
database summary
OrganoidDB Pan, Jianbo; Ma, Qinfeng; Tao, Haodong; Li, Qiang; Zhai, Zhaoyu; Zhang, Xuelu; Lin, Zhewei; Kuang, Ni
Organoid transcriptomics
database summary
Organoid transcriptomics
database summary
OriDB - The DNA Replication Origin Database Nieduszynski, Conrad; Siow, Cheuk; Nieduszynska, Sian; Müller, Carolin1
Confirmed and predicted DNA replication origin sites
database summary
Confirmed and predicted DNA replication origin sites
database summary
oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species Benoit Bouvrette, Louis Philip;Bovaird, Samantha;Blanchette, Mathieu;Lécuyer, Eric
No description supplied
database summary
No description supplied
database summary
OrthoDB Kuznetsov, Dmitry; Tegenfeld, Fredrik; Manni, Mose; Seppey, Mathieu; Berkeley, Matthew; Kriventseva, Evgenia; Zdobnov, Evgeny
OrthoDB v11: annotation of orthologs in the widest sampling of organismal d
database summary
OrthoDB v11: annotation of orthologs in the widest sampling of organismal d
database summary
OrthoDB Kriventseva, Evgenia; Zdobnov, Evgeny; Kuznetsov, Dmitry; Tegenfeld, Fredrik; Manni, Mose; Berkeley, Matthew
A hierarchical catalogue of orthologous proteins in fungal, plant, archaeal, bacterial and viral species
database summary
A hierarchical catalogue of orthologous proteins in fungal, plant, archaeal, bacterial and viral species
database summary
OrtholugeDB Whiteside, M.D., Winsor, G.L., Laird, M.R., Brinkman, F.S.L.
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
database summary
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
database summary
OrthoMAM Scornavacca, Celine; Allio, Rémi; Delsuc, Frédéric; Belkhir, Khalid; Douzery, Emmanuel; Ranwez, Vincent
OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics
database summary
OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics
database summary
OverGeneDB Makalowska, Izabela; Rosikiewicz, Wojciech; Suzuki, Yutaka,
No description supplied
database summary
No description supplied
database summary
P-MITE Chen, Jiongjiong; Hu, Qun; Zhang, Yu; Lu, Chen; Kuang, Hanhui
Plant miniature inverted-repeat transposable elements (MITEs)
database summary
Plant miniature inverted-repeat transposable elements (MITEs)
database summary
P10K Miao, Wei; Gao, Xinxin; Chen, Kai; Xiong, Jie,'; Zou, Dong; Yang, Fangdian; Ma, Yingke; Jiang, Chuanqi; Gao, Xiaoxuan; Wang, Guangying; Gu, Siyu; Zhang, Peng; Luo, Shuai; Huang, Kaiyao; Bao, Yi-Ming; Zhang, Zhang; Ma, Lina
The P10K Database: A Data Portal for the Protist 10,000 Genomes Project
database summary
The P10K Database: A Data Portal for the Protist 10,000 Genomes Project
database summary
P2CS Barakat, Mohamed; Ortet, Philippe; Whitworth, David E.; Santaella, Catherine; Achouak, Wafa
Prokaryotic 2-Component Systems database
database summary
Prokaryotic 2-Component Systems database
database summary
P3DB Xu, Dong; Yao, Qiuming; Ge, Huangyi; Wu, Shangquan; Zhang, Ning;; Chen, Wei; Xu,
Plant protein phosphorylation database
database summary
Plant protein phosphorylation database
database summary
PA-GOSUB
Protein sequences from model organisms, GO assignment and subcellular localization
database summary
Protein sequences from model organisms, GO assignment and subcellular localization
database summary
PAGER 2.0 Chen, Jake; Yue, Zongliang; Zheng, Qi; Neylon, Michael; Yoo, Minjae; Shin, Jimin; Zhao, Zhiying; Tan, Aik-Choon
No description supplied
database summary
No description supplied
database summary
PAGER-COV Chen, Jake Yue; Yue, Zongliang; Zhang, Eric; Xu, Clark; Khurana, Sunny; Batra, Nishant; Dang, Son; James, Cimino
Pathways and gene lists related to COVID-19
database summary
Pathways and gene lists related to COVID-19
database summary
PAIDB - Pathogenicity Island Database Yoon, Sung Ho; Park, Young-Kyu; Kim, Jihyun F.
Pathogenicity islands in bacterial genomes
database summary
Pathogenicity islands in bacterial genomes
database summary
PAIR Mingzhi Lin 1, Xueling Shen 2 and Xin Chen 1,2
Predicted Arabidopsis Interactome Resource
database summary
Predicted Arabidopsis Interactome Resource
database summary
PALI Rakesh R., Bhaskara R. M., and Srinivasan N.
A Database of pairwise and multiple structural alignments of memnbers of protein domain families of known 3-D structured and structure based phylogenies. Alignments involving members of domain families with not necessarily known 3-D structure are also available in the database.
database summary
A Database of pairwise and multiple structural alignments of memnbers of protein domain families of known 3-D structured and structure based phylogenies. Alignments involving members of domain families with not necessarily known 3-D structure are also available in the database.
database summary
PAMDB Wilks, Angela; Huang, Weiliang; Brewer, Luke; Jones, Jace; Nguyen, Angela; Marcu, Ana; Wishart, David; Oglesby-Sherrouse, Amanda; Kane, Maureen
A comprehensive Pseudomonas aeruginosa metabolome database
database summary
A comprehensive Pseudomonas aeruginosa metabolome database
database summary
PancanQTL Han, Leng; Gong, Jing'; Mei, Shufang; Liu, Chun-Jie; Xiang, Yu; Ye, Youqiong; Zhang, Zhao; Feng, Jing; Liu, Renyan; Diao, Lixia; Guo, Anyuan; Miao, Xiaoping
No description supplied
database summary
No description supplied
database summary
PancanQTL Han, Leng; Chen, Chengxuan; Liu, Yuan; Luo, Mei; Yang, Jingwen; Chen, Yamei; Wang, Runhao; Zhou, Joseph; Zang, Yong; Diao, Lixia
PancanQTLv2.0: a comprehensive resource for expression quantitative trait loci across human cancers
database summary
PancanQTLv2.0: a comprehensive resource for expression quantitative trait loci across human cancers
database summary
Pancreas Expression Chelala, Claude; Dayem Ullah, Abu; Cutts, Rosalind; Ghetia, Millika; Gadaleta, Emanuela; Hahn, Stephan; Crnogorac-Jurcevic, Tatjana; Lemoine, Nicholas
Pancreatic Expression database
database summary
Pancreatic Expression database
database summary
PANTHER Thomas, Paul; Mi, Huaiyu'; Ebert, Dustin; Muruganujan, Anushya; Mills, Caitlin; Albou, Laurent-Philippe; Mushayahama, Tremayne
Protein sequence evolution mapped to functions and pathways
database summary
Protein sequence evolution mapped to functions and pathways
database summary
PANZEA Zhao W.1, Canaran P.1, Jurkuta R.2, Fulton T.3, Glaubitz J.2, Buckler E.3,4, Doebley J.2, Gaut B.5, Goodman M.6, Holland J.6,7, Kresovich S.3, McMullen M.8,9, Stein L.1 and Ware D.1,4
Maize genome project data
database summary
Maize genome project data
database summary
Papillomavirus Episteme Alison McBride
A database of Papillomaviridae family of viruses
database summary
A database of Papillomaviridae family of viruses
database summary
PASS2 Sowdhamini, Ramanathan; Gandhimathi, Arumugam; Nair, Anu
Structural motifs of protein superfamilies
database summary
Structural motifs of protein superfamilies
database summary
PAT Zhang, Zheng; Liu, Ya; Liu, Sheng; Pan, Zhuo; Ren, Yu; Jiang, Yiru; Wang, Feng; Li, Dan-dan; Li, Yue-zhong
Prokaryotic Antimicrobial Toxin database
database summary
Prokaryotic Antimicrobial Toxin database
database summary
PathBank Wishart, David ; Kruger, Ray; Sivakumaran, Aadhavya; Harford, Karxena; Sanford, Selena; Doshi, Rahil; Khetarpal, Nitya; Fatokun, Omolola; Doucet, Daphnée; Zubkowski, Ashley; Jackson, Hayley; Sykes, Gina; Ramirez, Miguel; Marcu, Anna; Liang, Carin; Yee, Kristen; Garros, Christiana; Yahya Rayat, Dorsa; Coleongco, Jeanne; Nandyala, Tharuni; Gautam, Vasuk; Oler, Eponine
PathBank 2.0 – The Pathway Database for Model Organism Metabolomics
database summary
PathBank 2.0 – The Pathway Database for Model Organism Metabolomics
database summary
PathBank Wishart, David S.; Li, Carin; Marcu, Ana; Hasan, Badran; Pon, Allison; Budinski, Zachary; Patron, Jonas; Lipton, Debra; Cao, Xuan; Oler, Eponine; Li, Krissa; Paccoud, Maïlys; Hong, Chelsea; Guo, An Chi; Chan, Christopher; Wei, William; Ramirez-Gaona, Miguel
PathBank is a new, comprehensive, visually rich pathway database containing
database summary
PathBank is a new, comprehensive, visually rich pathway database containing
database summary
PathBase
European mutant mice pathology database: histopathology photomicrographs and macroscopic images
database summary
European mutant mice pathology database: histopathology photomicrographs and macroscopic images
database summary
pathDIP Rahmati, Sara; Abovsky, Mark; Pastrello, Chiara; Jurisica, Igor
Pathway data integration and analysis portal
database summary
Pathway data integration and analysis portal
database summary
PathDIP Jurisica, Igor; Pastrello, Chiara; Kotlyar, Max; Abovsky, Mark; Lu, Richard
PathDIP 5: Improving coverage and making enrichment analysis more biologically meaningful.
database summary
PathDIP 5: Improving coverage and making enrichment analysis more biologically meaningful.
database summary
Pathguide Bader G.D., Cary M.P. and Sander C.
A listing of pathway, signal transduction and protein-protein interaction databases
database summary
A listing of pathway, signal transduction and protein-protein interaction databases
database summary
PathoPlant® Bülow L.1, Schindler M.2 and Hehl R.1
Signal transduction related to plant-pathogen interactions
database summary
Signal transduction related to plant-pathogen interactions
database summary
PathoYeastract Teixeira, Miguel Monteiro, Pedro Tiago; Pais, Pedro; Costa, Catarina; Manna, Sauvagya; Sá-Correia, Isabel
Transcription regulation in pathogenic yeasts
database summary
Transcription regulation in pathogenic yeasts
database summary
Pathway Commons Ethan G. Cerami, Benjamin E. Gross, Emek Demir, Igor Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz, Gary D. Bader, and Chris Sander
Metabolic and signaling pathways from multiple organisms
database summary
Metabolic and signaling pathways from multiple organisms
database summary
PATRIC, the bacterial bioinformatics database and analysis resource Alice R. Wattam1, David Abraham1, Oral Dalay1, Terry L. Disz2, 3, Timothy Driscoll1, Joseph L. Gabbard1, 4, Roger Gough1, Deborah Hix1, Ronald Kenyon1, Dustin Machi1, Chunhong Mao1, Eric K. Nordberg1, Robert Olson2, 3, Ross Overbeek3, 5, Gordon D. Pusch5, Maulik Shukla1, Julie Schulman1, Rick L. Stevens2, 6, Daniel E. Sullivan1, Veronika Vonstein5, Andrew Warren1, Rebecca Will1, Meredith J.C. Wilson1, Hyun Seung Yoo1, Chengdong Zhang1, Yan Zhang1, Bruno W. Sobral1, 7
PathoSystems Resource Integration Center
database summary
PathoSystems Resource Integration Center
database summary
Patrocles Samuel Hiard, Carole Charlier, Wouter Coppieters, Michel Georges, and Denis Baurain
Polymorphic miRNA-mediated gene regulation in vertebrates
database summary
Polymorphic miRNA-mediated gene regulation in vertebrates
database summary
PCAT Zheng, Siyuan; Yang, Juechen; Li, Qilin; Noureen, Nighat; Fang, Yanbing; Kurmasheva, Raushan; Houghton, Peter; Wang, Xiaojing1
Pediatric cancer transcriptome explorer
database summary
Pediatric cancer transcriptome explorer
database summary
PCDB Ezequiel I. Juritz, Sebastian Fernandez Alberti, and Gustavo D. Parisi
Protein Conformational Diversity database
database summary
Protein Conformational Diversity database
database summary
PCDDB Lee Whitmore, Benjamin Woollett, Andrew John Miles, D.P. Klose, Robert W. Janes, and B. A. Wallace
Protein Circular Dichroism Database
database summary
Protein Circular Dichroism Database
database summary
PceRBase Chen, Ming; Yuan, Chunhui ,; Meng, XianWen; Li, Xue; Illing, Nicola; Ingle, Robert; Wang, Jingjing
Competing endogenous RNAs in plants
database summary
Competing endogenous RNAs in plants
database summary
PCMDB Cao, Peijian; jin, jingjing; Lu, Peng; Xu, Yalong; Tao, Jiemeng; Li, Zefeng; Wang, Shuaibin; Yu, Shizhou; Wang, Chen; Xie, Xiaodong; Gao, Junping; Chen, Qiansi; Wang, Lin; Pu, Wenxuan
Plant Cell Marker Database
database summary
Plant Cell Marker Database
database summary
PCOSKB Idicula-Thomas, Susan; JOSEPH, SHAINI; BARAI, RAM SHANKAR; Bhujbalrao, Rasika
Genes, diseases, and pathways associated with PolyCystic Ovary Syndrome
database summary
Genes, diseases, and pathways associated with PolyCystic Ovary Syndrome
database summary
PCRPi-DB Joan Segura and Narcis Fernandez-Fuentes
Presaging Critical Residues in Protein interface DataBase
database summary
Presaging Critical Residues in Protein interface DataBase
database summary
PCSD Su, Zhen; Liu, Yue'; Tian, Tian'; Zhang, Kang.,; You, Qi; Yan, Hengyu; Zhao, Nannan; Yi, Xin; Xu, Wenying
No description supplied
database summary
No description supplied
database summary
PDB facilities Touw, Wouter; Baakman, Coos; Black, Jon; te Beek, Tim; Krieger, Elmar; Joosten, Robbie; Vriend, Gert
Database of secondary structures of proteins
database summary
Database of secondary structures of proteins
database summary
PDB-Ligand Jae-Min Shin and Doo-Ho Cho
3D structures of small molecules bound to proteins and nucleic acids
database summary
3D structures of small molecules bound to proteins and nucleic acids
database summary
PDB-REPRDB Noguchi, T., Akiyama, Y.
Representative protein chains, based on PDB entries
database summary
Representative protein chains, based on PDB entries
database summary
PDBe Armstrong, David R;Berrisford, John M;Conroy, Matthew J;Gutmanas, Aleksandras;Anyango, Stephen;Choudhary, Preeti;Clark, Alice R;Dana, Jose M;Deshpande, Mandar;Dunlop, Roisin;Gane, Paul;Gáborová, Romana;Gupta, Deepti;Haslam, Pauline;KoÄ\x8Da, Jaroslav;Mak, Lora;Mir, Saqib;Mukhopadhyay, Abhik;Nadzirin, Nurul;Nair, Sreenath;Paysan-Lafosse, Typhaine;Pravda, Lukas;Sehnal, David;Salih, Osman;Smart, Oliver;Tolchard, James;Varadi, Mihaly;Svobodova-VaÅ™eková, Radka;Zaki, Hossam;Kleywegt, Gerard J;Velankar, Sameer
PDBe is a founding member of the Worldwide Protein Data Bank (wwPDB) which collects, organises and disseminates data on biological macromolecular structures.
database summary
PDBe is a founding member of the Worldwide Protein Data Bank (wwPDB) which collects, organises and disseminates data on biological macromolecular structures.
database summary
PDBe-KB Varadi, Mihaly; Anyango, Stephen; Armstrong, David; Berrisford, John; Choudhary, Preeti; Deshpande, Mandar; Nadzirin, Nurul; Nair, Sreenath; Pravda, Lukáš; Tanweer, Ahsan; Al-Lazikani, Bissan; Andreini, Claudia; Barton, Geoffrey; Bednar, David; Berka, Kar
PDBe-KB: Collaboratively defining the biological context of structural data
database summary
PDBe-KB: Collaboratively defining the biological context of structural data
database summary
PDBflex Godzik, Adam; Hrabe, Thomas; Li, Zhanwen; Sedova, Mayya A; Rotkiewicz, Piotr; Jaroszewski, Lukasz
Flexibility in protein structures
database summary
Flexibility in protein structures
database summary
PDBselect Heinz-Uwe Hobohm
Representative protein structures with low sequence identity
database summary
Representative protein structures with low sequence identity
database summary
PDB_TM GÁbor E. TusnÁdy, Zsuzsanna DosztÁnyi and IstvÁn Simon
Transmembrane proteins with known 3D structure
database summary
Transmembrane proteins with known 3D structure
database summary
PDCM Finder Perova, Zinaida; Martinez, Mauricio; Lopez Gomez, Federico; Halmagyi, Csaba; Follette, Alex; Mason, Jeremy; Mandloi, Tushar; Neuhauser, Steven; Krupke, Debra; Begley, Dale; Bult, Carol; Parkinson, Helen; Groza, Tudor
Patient-Derived Cancer Models
database summary
Patient-Derived Cancer Models
database summary
pE-DB Tompa, Peter; Lazar, Tamas; MartÃÂnez-Pérez, Elizabeth; Quaglia, Federica; Hatos, Andras; Chemes, Lucia; Bernado, Pau; Blackledge, Martin; Cordeiro, Tiago; Fagerberg, Eric; Forman-Kay, Julie; Silvina, Marina; Garrone, Nicolas; Gibson, Toby; Gomes, Gregory;
Protein Ensemble Database: ensembles of intrinsically disordered and of unfolded proteins
database summary
Protein Ensemble Database: ensembles of intrinsically disordered and of unfolded proteins
database summary
PED Monzon, Alexander; Ghafouri, Hamidreza; Lazar, Tamas; Del Conte, Alessio; Tenorio Ku, Luiggi G; Tompa, Peter; Tosatto, Silvio
PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins
database summary
PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins
database summary
PED Chelala, Claude; Marzec, Jacek; Dayem Ullah, Abu; Pirrò, Stefano; Gadaleta, Emanuela; Lemoine, nicholas; Kocher, Hemant
The Pancreatic Expression Database
database summary
The Pancreatic Expression Database
database summary
PedAM Ni, Xin; Jia, Jinmeng; An, Zhongxin; Ming, Yue; Guo, Yongli; Li, Wei; Li, Xin; Guo, Dongming; Liang, Yunxiang; Tai, Jun; Chen, Geng'; Jin, Yaqiong; Liu, Zhimei; Shi, Tieliu
No description supplied
database summary
No description supplied
database summary
PEDANT Frishman, D.1, Mokrejs, M.1, Kosykh, D.1, Kastenmüller, G.1, Kolesov, G.1, Zubrzycki, I.1, Gruber, C.2, Geier, B.2, Kaps, A.2, Albermann, K.2, Volz, A.2, Wagner, C.2, Fellenberg, M.2, Heumann, K.2, Mewes, H.-W.3
Automated analysis of genomic sequences
database summary
Automated analysis of genomic sequences
database summary
PEDE - Pig Expression Data Explorer Uenishi H.1,3, Eguchi-Ogawa T.1,3, Shinkai H.2,3, Okumura N.2,3, Suzuki K.2,3, Toki D.2,3, Hamasima N.1,3, Awata T.1,3
Full-length pig cDNA libraries and ESTs
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Full-length pig cDNA libraries and ESTs
database summary
PepCyber:P~Pep
Human protein interactions mediated by phosphoprotein-binding domains
database summary
Human protein interactions mediated by phosphoprotein-binding domains
database summary
PeptideAtlas Desiere F., Deutsch E.W., King N.L., Nesvizhskii A.I, Mallick P., Eng J., Chen S., Eddes J., Loevenich S.N., and Aebersold R.
Peptides identified in LC-MS/MS proteomics experiments
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Peptides identified in LC-MS/MS proteomics experiments
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PepX Peter Vanhee, Joke Reumers, Francois Stricher, Lies Baeten, Luis Serrano, Joost Schymkowitz, and Frederic Rousseau
A non-redundant database of protein-peptide complexes
database summary
A non-redundant database of protein-peptide complexes
database summary
PeroxisomeDB SchlÜter A.1, Fourcade S.1, DomÈnech-EstÉvez E.1, GabaldÓn T.2, Huerta-Cepas J.2, Berthommier G.3, Ripp R.3, Wanders R.J.A. 4, Poch O.3 and Pujol A.1,5
Peroxisomal proteins, metabolic routes and diagnostic tools
database summary
Peroxisomal proteins, metabolic routes and diagnostic tools
database summary
PertOrg Pan, Jianbo; Zhai, Zhaoyu; Zhang, Xuelu; Zhou, Lu; Lin, Zhewei; Kuang, Ni; Li, Qiang; Ma, Qinfeng; Tao, Haodong; Gao, Jieya; Ma, Shiyong
Changes induced in model organisms by in vivo genetic perturbation
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Changes induced in model organisms by in vivo genetic perturbation
database summary
Peryton Hatzigeorgiou, Artemis; Skoufos, Giorgos; Kardaras, Filippos; Alexiou, Athanasios; Kavakiotis, Ioannis; Lambropoulou, Anastasia; Kotsira, Vasiliki; Tastsoglou, Spyros
Microbe-disease associations
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Microbe-disease associations
database summary
Pfam Mistry, Jaina; Chuguransky, Sara; Williams, Lowri; Qureshi, Matloob; Salazar, Gustavo; Sonnhammer, Erik; Tosatto, Silvio; Paladin, Lisanna; Raj, Shriya; Richardson, Lorna; Finn, Robert; Bateman, Alex
Multiple sequence alignments and hidden Markov models of common protein domains
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Multiple sequence alignments and hidden Markov models of common protein domains
database summary
PGG.MHC Xu, Shuhua; Zhao, Xiaohan; Ma, Sen; Jiang, Xuetong; Wang, Baonan
Population genetics of HLA genes
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Population genetics of HLA genes
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PGG.Population Xu, Shuhua; Zhang, Chao'; Gao, Yang; Liu, Jiaojiao; Xue, Zhe; Lu, Yan'; Deng, Lian; Tian, Lei; Feng, Qidi
No description supplied
database summary
No description supplied
database summary
PGG.SV Xu, Shuhua; Wang, Yimin; Ling, Yunchao; Gong, Jiao; Zhao, Xiaohan; Zhou, Hanwen; Xie, Bo; Lou, Haiyi; Zhuang, Xinhao; Jin, Li `; Fan, Shaohua; Zhang, Guo-Qing
Human genome structural variants
database summary
Human genome structural variants
database summary
PGS-depot Yang, Sheng; Cao, Chen; Zhang, Shuting; Wang, Jianhua; Tian, Min; Ji, Xiaolong; Huang, Dandan; Gu, Ning
PGS-Depot: a comprehensive resource for polygenic score constructed by summary statistics based methods
database summary
PGS-Depot: a comprehensive resource for polygenic score constructed by summary statistics based methods
database summary
PhageScope LI, Shuaicheng; Wang, Ruohan; Yang, Shuo; Liu, Zhixuan; Zhang, Yuanzheng; WANG, XUEYING; Xu, Zixin; Wang, Jianping
PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations
database summary
PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations
database summary
PharmacoDB Haibe-Kains, Benjamin; Smirnov, Petr; Kofia, Victor; Maru, Alexander; Freeman, Mark; Ho, Chantal; El-Hachem, Nehme; Adam, George-Alexandru; Ba-alawi, Wail; Safikhani, Zhaleh
Recent cancer pharmacogenomic studies profiled large panels of cell lines a
database summary
Recent cancer pharmacogenomic studies profiled large panels of cell lines a
database summary
PharmacoDB Haibe-Kains, Benjamin; Feizi, Nikta; Kadambat Nair, Sisira; Smirnov, Petr; Beri, Gangesh; Eeles, Christopher; Nasr Esfahani, Parinaz; Nakano, Minoru; Tkachuk, Denis; Mammoliti, Anthony; Gorobets, Evgeniya; Mer, Arvind Singh; Lin, Eva; Yu, Yihong; Martin,
PharmacoDB 2.0 : Improving scalability and transparency of in vitro pharmac
database summary
PharmacoDB 2.0 : Improving scalability and transparency of in vitro pharmac
database summary
PharmGKB Altman R.B., Carrillo M.W., Gong M, Gor W., Hernandez-Boussard T., Holbert D., Kiuchi M., MacBride A., Murray T., Liu F., Thorn C.F., Woon M., Truong T., Zhou T. and Klein T.E.
Variation in drug response based on human variation
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Variation in drug response based on human variation
database summary
PharmGWAS Jia, Peilin; Hongen, Kang; Pan, Siyu; Lin, Shiqi; Yuan, Na
PharmGWAS: a GWAS-based knowledgebase for drug repurposing
database summary
PharmGWAS: a GWAS-based knowledgebase for drug repurposing
database summary
Pharos Oprea, Tudor; Sheils, Timothy; Mathias, Stephen; Kelleher, Keith; Siramshetty, Vishal; Nguyen, Dac-Trung; Bologa, Cristian; Jensen, Lars,; Vidovic, Dusica; Koleti, Amar; Schurer, Stephan; Waller, Anna; Yang, Jeremy; Holmes, Jayme; Dharkar, Poorva; Mathé,
Heterogenous data on unstudied and understudied drug targets
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Heterogenous data on unstudied and understudied drug targets
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PhaSepDB Li, Tingting; Hou, Chao; Wang, Xinxin; Xie, Haotai; Chen, Taoyu; Zhu, Peiyu; Xu, Xiaofeng1; You, Kaiqiang
PhaSepDB in 2022: annotating phase separation-related proteins with droplet
database summary
PhaSepDB in 2022: annotating phase separation-related proteins with droplet
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PhaSePro Bálint Mészáros, Gábor ErdÅ‘s, Beáta Szabó, Éva Schád, Ã\x81gnes Tantos, Rawan Abukhairan, Tamás Horváth, Nikoletta Murvai, Orsolya P Kovács, Márton Kovács, Silvio C E Tosatto, Péter Tompa, Zsuzsanna Dosztányi, Rita Pancsa
Membraneless organelles (MOs) are dynamic liquid condensates that host a va
database summary
Membraneless organelles (MOs) are dynamic liquid condensates that host a va
database summary
PheLiGe Aulchenko, Yurii; Shashkova, Tatiana; Pakhomov, Eugene; Gorev, Denis; Karssen, Lennart; Joshi, Peter
Genotype-phenotype associations
database summary
Genotype-phenotype associations
database summary
PhenomicDB Groth P.1, Pavlova N.2, Kalev I.2,Tonov S.2, Georgiev G.2, Pohlenz H.D.1 andWeiss B.1
A cross-species genotype/phenotype database
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A cross-species genotype/phenotype database
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PhenoModifier Sun, Hong; Guo, Yangfan; Lan, Xiaoping; Jia, Jia; Cai, Xiaoshu; Zhang, Guoqing; Xie, Jingjing; Liang, Qian; Li, Yixue; Yu, Guangjun
PhenoModifier is a genetic modifier database for elucidating the genetic ba
database summary
PhenoModifier is a genetic modifier database for elucidating the genetic ba
database summary
PhEVER Leonor Palmeira, Simon Penel, Vincent Lotteau, Chantal Rabourdin-Combe, and Christian Gautier
Phylogenetic Exploration of Viruses and their Evolutionary Relationships
database summary
Phylogenetic Exploration of Viruses and their Evolutionary Relationships
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PHI-base Urban, Martin1; Pant, Rashmi2; Raghunath, Arath2i; Irvine, Alistair3; Pedro, Helder4; Hammond-Kosack, Kim1
Genes affecting pathogen-host interactions
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Genes affecting pathogen-host interactions
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PHI-base Urban, Martin; Cuzick, Alayne; Seager, James; Wood, Val; Rutherford, Kim; Yagwakote Venkatesh, Shilpa; Sahu, Jashobanta; Iyer, S.; Khamari, Lokanath; De Silva, Nishadi; Carbajo MartÃnez, Manuel; Pedro, Helder; Yates, Andrew; Hammond-Kosack, Kim
PHI-base in 2022: a multi-species phenotype database for Pathogen–Host In
database summary
PHI-base in 2022: a multi-species phenotype database for Pathogen–Host In
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phiSITE Lubos Klucar, Matej Stano, and Matus Hajduk
Gene regulation in bacteriophages
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Gene regulation in bacteriophages
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PHOSIDA Florian Gnad, Jeremy Gunawardena, and Matthias Mann
Phosphorylation sites in various species identified by mass spectrometry
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Phosphorylation sites in various species identified by mass spectrometry
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Phospho3D Zanzoni A., Ausiello G., Via A., Gherardini P.F. and Helmer-Citterich M.
3D structures of protein phosphorylation sites
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3D structures of protein phosphorylation sites
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PhosphoSItePlus
Sites of protein phosphorylation and other post-translational modifications
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Sites of protein phosphorylation and other post-translational modifications
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PhycoCosm Grigoriev, Igor; Hayes, Richard; Calhoun, Sara; Kamel, Bishoy; Wang, Alice; Ahrendt, Steven; Dusheyko, Serge; Nikitin, Roman; Mondo, Stephen; Salamov, Asaf; Shabalov, Igor; Kuo, Alan
Comparative genomics of algae
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Comparative genomics of algae
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PhyloFacts Krishnamurthy N., Brown D., Kirshner D., Glanville J. and SjÖlander K.
Phylogenomic analysis of protein families
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Phylogenomic analysis of protein families
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PhylomeDB Gabaldon, Toni; Fuentes, Diego; Molina, Manu; Chorostecki, Uciel; Capella-Gutierrez, Salvador; Marcet-Houben, Marina
PhylomeDB V5: an expanding repository for genome-wide catalogues of annotat
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PhylomeDB V5: an expanding repository for genome-wide catalogues of annotat
database summary
PhylomeDB Gabaldon, Toni; Huerta-Cepas, Jaime; Capella-Gutierrez, Salvador; Pryszcz, Leszek; Marcet-Houben, Marina
Experimentally validated and predicted serine phosphorylation sites in Arabidopsis thaliana
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Experimentally validated and predicted serine phosphorylation sites in Arabidopsis thaliana
database summary
PhytoPath Kersey, Paul (proxy) (contact); Pedro, Helder; Maheswari, Uma; McDowall, Mark; Urban, Martin; Hammond-Kosack, Kim; Staines, Daniel; Kulesha, Eugene; Cuzick, Alayne; Irvine, Alistair
Genomics of fungal, oomycete and bacterial phytopathogens
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Genomics of fungal, oomycete and bacterial phytopathogens
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PICKLES Novak, Lance C; Chou, Juihsuan; Colic, Medina; Bristow, Christopher; Hart, Traver
PICKLES v3: the updated database of pooled in vitro CRISPR knockout library
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PICKLES v3: the updated database of pooled in vitro CRISPR knockout library
database summary
pico-PLAZA Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.
Genome database of microbial photosynthetic eukaryotes.
database summary
Genome database of microbial photosynthetic eukaryotes.
database summary
PIDD Wu D.1, Cui F.1, Jernigan R.2 and Wu Z.3
A database of protein inter-atomic distances
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A database of protein inter-atomic distances
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PigBioBank Zhang, Zhe; Zeng, Haonan; Zhang, Wenjing; Lin, Qing; Gao, Yahui; Teng, Jinyan; Xu, Zhiting; Cai, Xiaotian; Zhong, Zhanming; Wu, Jun; Liu, Yuqiang; Diao, Shuqi; Wei, Chen; Gong, WenTao; Pan, Xiangchun; Li, Zedong; Huang, Xiaoyu; Chen, Xifan; Du, Jinshi; Zhao, Fuping; Zhao, Yunxiang; Ballester, Maria; Crespo-Piazuelo, Daniel; Amills, Marcel; Clop, Alex; Karlskov-Mortensen, Peter; Fredholm, Merete; Li, Pinghua; Huang, Ruihua; Tang, Guoqing; Li, Mingzhou; Liu, Xiaohong; Yaosheng, Chen; Zhang, Qin; Li, Jiaqi; Yuan, Xiaolong; Ding, Xiangdong; Fang, Lingzhao
PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs
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PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs
database summary
PigGIS Ruan J.1,2, Guo Y.1,2, Li H.1, Hu Y.1, Song F.1, Huang X.1, Ma L.1,2, Kristiensen K.3, Bolund L.1,4 and Wang J.1,3,4
Pig genome mapping, genes and ESTs
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Pig genome mapping, genes and ESTs
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PINT Shaji Kumar M.D.1 and Gromiha M.M.2
Protein-protein interactions thermodynamic database
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Protein-protein interactions thermodynamic database
database summary
PIR - Protein Information Resource Wu C.H.1, Yeh L.S.2, Huang H.1 and Barker W.C.2
PIR protein sequence database, has been merged into UniProt Knowledgebase and UniParc
database summary
PIR protein sequence database, has been merged into UniProt Knowledgebase and UniParc
database summary
piRBase He, Shunmin; Wang, Jiajia"; Shi, YiRong; Zhou, Honghong; Zhang, Peng.'; Song, Tingrui; Ying, Zhiye; Yu, Haopeng; Li, Yanyan; Zhao, Yi; Zeng, Xiaoxi; Chen, Runsheng.
piRBase: integrating piRNA annotation in all aspects
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piRBase: integrating piRNA annotation in all aspects
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piRBase: a comprehensive database of piRNA sequences Wang, Jiajia;Zhang, Peng;Lu, Yiping;Li, Yanyan;Zheng, Yu;Kan, Yunchao;Chen, Runsheng;He, Shunmin
No description supplied
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No description supplied
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piRNABank
Sequences and properties of Piwi-interacting RNAs (piRNAs) in human, mouse and rat
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Sequences and properties of Piwi-interacting RNAs (piRNAs) in human, mouse and rat
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PIRSF Natale, D.A.1, Arighi, C.1, Barker, W.C.2, Hu, Z. Z. 1, Huang, H.1, Mazumder, R. 1, Nikolskaya, A. N. 1, Vasudevan. S.2, Vinayaka, C. R.2, Yeh, L.S.2, Wu, C. H.1
PIR's family/superfamily classification of whole proteins
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PIR's family/superfamily classification of whole proteins
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piRTarBase: a database of piRNA targeting sites and their roles in gene regulation Wu, Wei-Sheng;Brown, Jordan S;Chen, Tsung-Te;Chu, Yu-Han;Huang, Wei-Che;Tu, Shikui;Lee, Heng-Chi
No description supplied
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No description supplied
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PIT-DB Bessant, Conrad; Saha, Shyamasree; Chatzimichali, Eleni; Matthews, David
No description supplied
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No description supplied
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PK-DB König, Matthias; Grzegorzewski, Jan; Brandhorst, Janosch; Green, Kathleen; Eleftheriadou, Dimitra; Duport, Yannick; Bartsch, Florian; Köller, Adrian; Ke, Danny; De Angelis, Sara
Pharmacokinetics data from clinical trials and pre-clinical research
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Pharmacokinetics data from clinical trials and pre-clinical research
database summary
PKDB - Pharmacokinetics Database Jan Grzegorzewski, Janosch Brandhorst, Kathleen Green, Dimitra Eleftheriadou, Yannick Duport, Florian Barthorscht, Adrian Köller, Danny (Yu Jia) Ke, Sara De Angelis and Matthias König
Pharmacokinetics Database
database summary
Pharmacokinetics Database
database summary
PLAbDab Deane, Charlotte; Abanades, Brennan; Olsen, Tobias; Raybould, Matthew; Aguilar-Sanjuan, Broncio; Wong, Wing Ki; Georges, Guy; Bujotzek, Alexander
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
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The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
database summary
PLaMoM Zhang, Shoudong; Guan, Daogang; Yan, Bin; Hua, Jingmin; Thieme, Christoph; Zhu, Hailong; Zhao, Zhongying,; Kragler, Friedrich; Xia, Yiji
Plant Mobile Macromolecules: Extracellular siRNAs, microRNAs, mRNAs and proteins in plants
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Plant Mobile Macromolecules: Extracellular siRNAs, microRNAs, mRNAs and proteins in plants
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PLANdbAffy Ramil N. Nurtdinov, Mikhail O. Vasiliev, Anna S. Ershova, Ilia S. Lossev, and Anna S. Karyagina
Probe-Level Annotation Database for Affymetrix microarrays
database summary
Probe-Level Annotation Database for Affymetrix microarrays
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Planet Microbe Hurwitz, Bonnie; Ponsero, Alise; Bomhoff, Matthew; Blumberg, Kai; Youens-Clark, Ken; Herz, Nina; Wood-Charlson, Elisha; Delong, Ed
Oceanographic omics datasets linked to environmental metadata
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Oceanographic omics datasets linked to environmental metadata
database summary
PlanMine Rink, Jochen; Brandl, Holger; Moon, HongKee; Vila-Farr�, Miquel; Liu, Shang-Yun; Henry, Ian
Platform for archiving and mining planarian biodiversity
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Platform for archiving and mining planarian biodiversity
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Plant DNA C-values database Garcia, Sònia; Leitch, Ilia; Anadon, Alba; Canela, Miguel; Gálvez, Francisco; Garnatje, Teresa; Gras, Airy; Hidalgo, Oriane; Johnston, Emmeline; Mas de Xaxars, Gemma; Pellicer, Jaume; Valles, Joan; Siljak-Yakovlev, Sonja; Vitales, Daniel; Bennett, Michael
Genome sizes of various plants and algae
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Genome sizes of various plants and algae
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Plant editosome database: a curated database of RNA editosome in plants Li, Man;Xia, Lin;Zhang, Yuansheng;Niu, Guangyi;Li, Mengwei;Wang, Pei;Zhang, Yang;Sang, Jian;Zou, Dong;Hu, Songnian;Hao, Lili;Zhang, Zhang
No description supplied
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No description supplied
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Plant MPSS Nakano M.1, Nobuta K.1, Vemaraju K.2, Singh Tej S.2, Skogen J.W.2, and Meyers B.C.1,2
Massively parallel signature sequencing of plant genes
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Massively parallel signature sequencing of plant genes
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Plant Ontology database Jaiswal P.1, Avraham S.2, Ilic K.3, Kellogg E.A.4, McCouch S.1, Pujar A.1, Reiser L.3, Rhee S.Y.3, Sachs M.M.5,6, Schaeffer M.6,7, Stein L.2, Stevens P. 4,8, Vincent L.7, Ware D.2,6, Zapata F.4,8
A controlled vocabulary of plant structures and growth stages
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A controlled vocabulary of plant structures and growth stages
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Plant Organelles Database
Images of plant organelles and protocols for plant organelle research12
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Images of plant organelles and protocols for plant organelle research12
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Plant Reactome Naithani, Sushma; Gupta, Parul; Elser, Justin; Hooks, Elizabeth; D'Eustachio, Peter G; Jaiswal, Pankajunreliable
Plant Reactome Knowledgebase: Empowering plant pathway exploration and OMICS data analysis
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Plant Reactome Knowledgebase: Empowering plant pathway exploration and OMICS data analysis
database summary
Plant Reactome Jaiswal, Pankaj; Naithani, Sushma; Preece, Justin; D'Eustachio, Peter; Gupta, Parul; Amarasinghe, Vindhya; Dharmawardhana, Palitha; Wu, Guanming; Fabregat, Antonio; Elser, Justin; Weiser, Joel; Keays, Maria; Muñoz-Pomer Fuentes, Alfonso; Petryszak, Robert; Stein, Lincoln; Ware, Doreen
Plant metabolic, regulatory and signaling pathways
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Plant metabolic, regulatory and signaling pathways
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Plant Stress-Responsive Gene Catalog
Stress-responsive gene in various plant species
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Stress-responsive gene in various plant species
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Plant-ImputeDB Gong, Jing; Gao, Yingjie; Yang, Wenqian; Yang, Zhiquan; Yang, Yanbo; Yang, Qing-Yong; Niu, Xiaohui
Reference panels and imputation methods for plant genomes
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Reference panels and imputation methods for plant genomes
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PLANT-PIs Consiglio A., Grillo G., Licciulli F., Ceci L.R., Liuni S., Losito N., Volpicella M., Gallerani R., and De Leo F.
Plant protease inhibitors
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Plant protease inhibitors
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PlantDHS Jiang, Jiming; Zhang, Tao; Marand, Alexandre
Plant DNase I hypersensitive Site Database
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Plant DNase I hypersensitive Site Database
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Planteome Jaiswal, Pankaj; Cooper, Laurel; Meier, Austin; Laporte, Marie; Mungall, Chris; Elser, Justin; Sinn, Brandon; Cavaliere, Dario; Carbon, Seth; Dunn, Nathan; Qu, Botong; Smith, Barry; Preece, Justin; Zhang, Eugene; Todorovic, Sinisa; Gkoutos, Georgios; Doonan, John; Stevenson, Dennis; Arnaud, Elizabeth
Reference and species-specific ontologies for plants, with annotations to plant genomics, phenomics and genetics data.
database summary
Reference and species-specific ontologies for plants, with annotations to plant genomics, phenomics and genetics data.
database summary
Planteome Jaiswal, Pankaj; Cooper, Laurel; Jaiswal, Pankajunreliable; Elser, Justin; Laporte, Marie; Arnaud, Elizabeth
Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology
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Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology
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plantEXP Dou, Daolong; liu, jinding; Zhang, Yaru; Zheng, Yiqing; Zhu, Yali; Guan, Zhuoran; Lang, Kun; Shen, Danyu; Huang, Wen
Plant gene (co-)expression and alternative splicing
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Plant gene (co-)expression and alternative splicing
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PlantGDB Dong, Q.1, Schlueter, S.D.1, Brendel, V.1,2
Actively-transcribed plant genomic sequences
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Actively-transcribed plant genomic sequences
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PlantGSAD Su, Zhen; Ma, Xuelian; Yan, Hengyu; Yang, Jiaotong; Liu, Yue'; Li, Zhongqiu; Sheng, Menghao; Cao, Yaxin; Yu, Xinyue; Yi, Xin; Xu, Wenying
Plant gene set annotations
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Plant gene set annotations
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PlantPAD Hao, Ge-Fei; Dong, Xinyu; Zhao, Kejun; Wang, Qi; Wu, Xincaiinactive; Huang, Yuanqin; Wu, Xue; Dong, Yanwen; Zhang, Tianhan; Liu, Yingwei; Wang, Shuang; Yang, Xiaoyan; Chen, Dongyu; Gao, Yangyang; Yang, Jing; Chen, Panfen; Gao, Zhenran; Wu, Xian; Wang, Yong; Bai, Qinrong; Li, Shaobo
PlantPAD: a platform for large-scale image phenomics analysis of disease in plant science
database summary
PlantPAD: a platform for large-scale image phenomics analysis of disease in plant science
database summary
PlantPAN Chang, Wen-Chi; Chow, Chi-Nga; Yang, Chien-Wen; Wu, Nai-Yun; Wang, Hung-Teng; Tseng, Kuan-Chieh; Chiu, Yu-hsuan; Lee, Tzong-Yi
PlantPAN 4.0: Updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters
database summary
PlantPAN 4.0: Updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters
database summary
PlantPAN Chang, Wen-Chi; Chow, Chi-Nga; Zheng, Han-Qin; Wu, Nai-Yun; Chien, Chia-Hung; Huang, Hsien-Da; Lee, Tzong-Yi; Chiang-Hsieh, Yi-Fan; Hou, Ping-Fu; Yang, Tien-Yi
Plant Promoter Analysis Navigator
database summary
Plant Promoter Analysis Navigator
database summary
PlantRNA Valérie Cognat*, Gaël Pawlak*, Anne-Marie Duchêne, Magali Daujat, Anaïs Gigant, Thalia Salinas, Morgane Michaud, Bernard Gutmann, Philippe Giegé, Anthony Gobert and Laurence Maréchal-Drouard
PlantRNA, a database for tRNAs of photosynthetic eukaryotes
database summary
PlantRNA, a database for tRNAs of photosynthetic eukaryotes
database summary
PlantsP/PlantsT Tchieu, J.2, Fana, F.1, Fink, J.L.1, Harper, J.3, Nair, M.2, Niedner, R.H.1, Smith, D.W.2, Steube, K.1, Tam, T.1, Veretnik, S.1, Wang, D.1, Gribskov, M.1
Functional genomics databases focusing on proteins involved in plant phosphorylation and membrane transport, respectively
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Functional genomics databases focusing on proteins involved in plant phosphorylation and membrane transport, respectively
database summary
PlantTFDB Jin, Jinpu; Tian, Feng; Yang, De-Chang; Meng, Yu-Qi; Kong, Lei; Luo, Jingchu; Gao, Ge
Plant Transcription Factor Database
database summary
Plant Transcription Factor Database
database summary
Plasma Proteome Database Pandey, Akhilesh; Nanjappa, Vishalakshi; Thomas, Joji; Marimuthu, Arivusudar; Muthusamy, Babylakshmi; Radhakrishnan, Aneesha; Sharma, Rakesh; Khan, Aafaque; Balakrishnan, Lavanya; Sahasrabuddhe, Nandini; Kumar, Satwant; Jhaveri, Binit; Sheth, Kaushal; Khatana, Ramesh; Shaw, Patrick; Srikanth, Srinivas; Mathur, Premendu; Shankar, Subramanian; Nagaraja, Dindagur; Christopher, Rita; Mathivanan, Suresh; Raju, Rajesh; Sirdeshmukh, Ravi; Chatterjee, Aditi; Simpson, Richard; Harsha, H; T.S., Keshava Prasad
Qualitative and quantitative information on proteins in human plasma and serum
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Qualitative and quantitative information on proteins in human plasma and serum
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Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data Jesus, Tiago F;Ribeiro-Gonçalves, Bruno;Silva, Diogo N;Bortolaia, Valeria;Ramirez, Mário;Carriço, João A
No description supplied
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No description supplied
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PlasmoGEM Schwach, Frank; Bushell, Ellen; Gomes, Ana Rita; Bronner Anar, Burcu; Girling, Gareth; Herd, Colin; Rayner, Julian; Billker, Oliver
DNA vectors and data for genetic manipulation of malaria parasites
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DNA vectors and data for genetic manipulation of malaria parasites
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Plastid-LCGbase Yu, Jun; Wang, Dapeng.
Plastid Lineage-based Conserved Gene-pair Database
database summary
Plastid Lineage-based Conserved Gene-pair Database
database summary
Platinum Ascher, David; Pires, Douglas; Blundell, Tom
Experimentally measured effects of mutations on protein-ligand complexes
database summary
Experimentally measured effects of mutations on protein-ligand complexes
database summary
PLAZA Proost, Sebastian; Van Bel, Michiel; Vaneechoutte, Dries; Van de Peer, Yves; Inzé, Dirk; Mueller-Roeber, Bernd; Vandepoele, Klaas
Comparative genomics of monocot and dicot plants
database summary
Comparative genomics of monocot and dicot plants
database summary
PLAZA Vandepoele, Klaas; Van Bel, Michiel; Silvestri, Francesca; Kreft, Lukasz; Botzki, Alexander; Weitz, Eric; Coppens, Frederik
PLAZA 5.0: extending the scope and power of comparative and functional geno
database summary
PLAZA 5.0: extending the scope and power of comparative and functional geno
database summary
PLAZA Vandepoele, Klaas; Van Bel, Michiel; Diels, Tim; Vancaester, Emmelien; Kreft, Lukasz; Botzki, Alexander; Van de Peer, Yves; Coppens, Frederik
No description supplied
database summary
No description supplied
database summary
PLSDB Keller, Andreas; Schmartz, Georges; Hartung, Anna; Hirsch, Pascal; Kern, Fabian; Fehlmann, Tobias; Mueller, Rolf
PLSDB: Advancing a comprehensive database of bacterial plasmids
database summary
PLSDB: Advancing a comprehensive database of bacterial plasmids
database summary
PLSDB: a resource of complete bacterial plasmids Galata, Valentina;Fehlmann, Tobias;Backes, Christina;Keller, Andreas
PLSDB: Advancing a comprehensive database of bacterial plasmids"
database summary
PLSDB: Advancing a comprehensive database of bacterial plasmids"
database summary
PMDB - Protein Model Database Castrignano T.1, D'Onorio De Meo P.1, Cozzetto D.2, Talamo I. G.2 and Tramontano, A.2,3
3D protein models obtained from structure predictions
database summary
3D protein models obtained from structure predictions
database summary
PMDBase Yu, Jingyin; Dossa, Komovi; Wang, Linhai; Zhang, Yanxin; Wei, Xin; Zhang, Xiurong
Plant microsatellites and marker development
database summary
Plant microsatellites and marker development
database summary
PMhub Chen, Wei; Tian, Zhitao; Hu, Xin; Xu, Yingying; Liu, Mengmeng; Liu, Hongbo; Li, Dongqin; Hu, Lisong; Wei, Guo-Zh
PMhub 1.0: a comprehensive plant metabolome database
database summary
PMhub 1.0: a comprehensive plant metabolome database
database summary
PmiREN Yang, Xiaozeng; Guo, Zhonglong; Kuang, Zheng; Zhao, Yongxin; Deng, Yang; He, Hao; Wan, Miaomiao; Tao, Yihan; Wang, Dong; Wei, Jianhua; Li, Lei
Plant miRNA encyclopedia
database summary
Plant miRNA encyclopedia
database summary
PmiRKB Yijun Meng 1,2,3, Lingfeng Gou 1, Dijun Chen 1, Chuanzao Mao 2, Yongfeng Jin 3, Ping Wu 2,and Ming Chen 1,2
Plant microRNA knowledge base
database summary
Plant microRNA knowledge base
database summary
PncsHub Stubenrauch, Christopher; Dai, Wei2; Li, Jiahui; Li, Qi; Cai, Jiasheng; Su, Jianzhong; Wang, Jiawei
Non-classically secreted proteins in Gram-positive bacteria
database summary
Non-classically secreted proteins in Gram-positive bacteria
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Pocketome Ruben Abagyan
Small-molecule and/or peptide binding pockets in the structural proteome
database summary
Small-molecule and/or peptide binding pockets in the structural proteome
database summary
POGO-DB Rosen, Gail; Lan, Yemin; Morrison, Calvin; Hershberg, Ruth
Pairwise-comparisons Of Genomes and universal Orthologous genes
database summary
Pairwise-comparisons Of Genomes and universal Orthologous genes
database summary
POGs/PlantRBP Walker N., Stiffler N., Barkan A.
Orthologous groups of RNA binding proteins in plants
database summary
Orthologous groups of RNA binding proteins in plants
database summary
Pol3Base Yang, Jian-Hua; Cai, Li; Xuan, Jiajia; Lin, Qiao; Wang, Junhao; Liu, Shu-Rong; Xie, Fangzhou; Zheng, Lingling; Li, Bin; Qu, Liang-Hu
PolIII-transcribed ncRNAs
database summary
PolIII-transcribed ncRNAs
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Polbase Brad Langhorst
Biochemical, genetic, and structural information about DNA polymerases
database summary
Biochemical, genetic, and structural information about DNA polymerases
database summary
PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing Herrmann, Christina J;Schmidt, Ralf;Kanitz, Alexander;Artimo, Panu;Gruber, Andreas J;Zavolan, Mihaela
Alternative cleavage and polyadenylation (APA) of RNAs gives rise to isofor
database summary
Alternative cleavage and polyadenylation (APA) of RNAs gives rise to isofor
database summary
PolyA_DB Tian, Bin; Wang, Ruijia; Nambiar, Ram; Zheng, Dinghai
No description supplied
database summary
No description supplied
database summary
PolyDoms Jegga A.G.1,2, Gowrisankar S.1,3, Chen J.1,3 and Aronow B.J.1,2,3
Human coding SNPs mapped onto protein domains
database summary
Human coding SNPs mapped onto protein domains
database summary
PolymiRTS Cui, Yan; Bhattacharya, Anindya; Ziebarth, Jesse
Polymorphism in microRNA Target Site
database summary
Polymorphism in microRNA Target Site
database summary
PolyQ Amy L. Robertson, Mark A. Bate, Steve G. Androulakis, Stephen P. Bottomley, and Ashley M. Buckle
Polyglutamine Repeats in Proteins
database summary
Polyglutamine Repeats in Proteins
database summary
PoMaMo - Potato Maps and More Meyer S.1, Nagel A.1, Basekow, R.1, Gebhardt C.2
A comprehensive database for potato genome data
database summary
A comprehensive database for potato genome data
database summary
PomBase McDowall, Mark; Harris, Midori; Lock, Antonia; Rutherford, Kim; Staines, Daniel; Bahler, Jurg; Kersey, Paul; Oliver, Stephen; Wood, Val
Genome database on S. pombe
database summary
Genome database on S. pombe
database summary
PopHuman Casillas, Sònia; Mulet, Roger; Villegas-Mirón, Pablo; Hervas, Sergi; Sanz, Esteve; Velasco, Daniel; Bertranpetit, Jaume; Laayouni, Hafid; Barbadilla, Antonio
The 1000 Genomes Project (1000GP) represents the most comprehensive world-w
database summary
The 1000 Genomes Project (1000GP) represents the most comprehensive world-w
database summary
PopHumanVar Casillas, Sònia; Colomer-Vilaplana, Aina; Murga-Moreno, Jesús; Canalda-Baltrons, Aleix; Inserte, Clara; Soto, Daniel; Coronado-Zamora, Marta; Barbadilla, Antonio
Causal variants of selective sweeps
database summary
Causal variants of selective sweeps
database summary
PortEco Hu, James C.; Sherlock, Gavin; Siegele, Deborah; Aleksander, Suzanne; Ball, Catherine; Demeter, Janos; Gouni, Sushanth; Liles, Nathan; McIntosh, Brenley; Mi, Huaiyu'; Muruganujan, Anushya; Wymore, Farrell; Thomas, Paul
Escherichia coli K-12 knowledgebase portal
database summary
Escherichia coli K-12 knowledgebase portal
database summary
PoSSuM Ito, Jun-ichi; Ikeda, Kazuyoshi; Yamada, Kazunori; Mizuguchi, Kenji; Tomii, Kentaro
Ligand-binding Pocket Similarity Search using Multiple-Sketches
database summary
Ligand-binding Pocket Similarity Search using Multiple-Sketches
database summary
POSTAR Lu, Zhi; Yang, Yu-Cheng; Hu, Boqin; Huang, Yiming; Zhu, Yumin
Post-transcriptional regulation by RNA-binding proteins
database summary
Post-transcriptional regulation by RNA-binding proteins
database summary
POSTAR Lu, Zhi; Zhao, Weihao; Zhang, Shang; Zhu, Yumin; Xi, Xiaochen; Bao, Pengfei; Ma, Ziyuan; Kapral, Thomas; Chen, Shuyuan; Zagrovic, Bojan; Yang, Yucheng
POSTAR3: an updated platform for exploring post-transcriptional regulation
database summary
POSTAR3: an updated platform for exploring post-transcriptional regulation
database summary
POSTAR2: deciphering the post-transcriptional regulatory logics Zhu, Yumin;Xu, Gang;Yang, Yucheng T;Xu, Zhiyu;Chen, Xinduo;Shi, Binbin;Xie, Daoxin;Lu, Zhi John;Wang, Pengyuan
No description supplied
database summary
No description supplied
database summary
PPD Toseland C.P., McSparron H., Doytchinova I.A., M.N.Davies, and Flower D.R.
Experimentally-determined protein pKa values
database summary
Experimentally-determined protein pKa values
database summary
ppdb Yamamoto, Yoshiharu.; Hieno, Ayaka; Naznin, Hushna; Hyakumachi, Mitsuro; Sakurai, Tetsuya; Tokizawa, Mutsutomo; Koyama, Hiroyuki; Sato, Naoki; Nishiyama, Tomoaki; Hasebe, Mitsuyasu; Zimmer, Andreas; Lang, Daniel; Reski, Ralf; Rensing, Stefan; Obokata, Junichi
Plant promoter database
database summary
Plant promoter database
database summary
PPGR xie, Jianbo; Yang, Sen; Zong, Wenting; Shi, Lingling; Li, Ruisi; Ma, Zhenshu; Ma, Shubao; Si, Jingna; Wu, Zhijing; Zhai, Jinglan; Fan, Zhuojing; Chen, Sisi; Huang, Huahong; Zhang, Deqiang; Bao, Yi-Ming; Li, Rujiao
PPGR: a comprehensive perennial plant genomes and regulation database
database summary
PPGR: a comprehensive perennial plant genomes and regulation database
database summary
Predictive Networks John Quackenbush
Integration, navigation, visualization, and analysis of gene interaction networks
database summary
Integration, navigation, visualization, and analysis of gene interaction networks
database summary
prePPI Barry Honig
Predicted and experimentally determined protein-protein interactions for yeast and human
database summary
Predicted and experimentally determined protein-protein interactions for yeast and human
database summary
PREX Laura Soito, Chris Williamson, Stacy T. Knutson, Jacquelyn S. Fetrow, Leslie B. Poole, and Kimberly J. Nelson
PeroxiRedoxin classification indEX
database summary
PeroxiRedoxin classification indEX
database summary
PRF
Protein research foundation database of peptides: sequences, literature and unnatural amino acids
database summary
Protein research foundation database of peptides: sequences, literature and unnatural amino acids
database summary
PRGdb Ercolano, Maria; Calle GarcÃa, Joan; Guadagno, Anna; PaytuvÃ, Andreu; Saera-Vila, Alfonso; Amoroso, Ciro Giammaria; D'Esposito, Daniela; Andolfo, Giuseppe; Aiese Cigliano, Riccardo; Sanseverino, Walter
Plant Resistance Genes
database summary
Plant Resistance Genes
database summary
PRGdb Ercolano, Maria; Osuna Cruz, Cristina; PaytuvÃÂ, Andreu; Di Donato, Antimo; Sundesha, Vicky; Andolfo, Giuseppe; Aiese Cigliano, Riccardo; Sanseverino, Walter
The Plant Resistance Genes database (PRGdb; http://prgdb.org) has been rede
database summary
The Plant Resistance Genes database (PRGdb; http://prgdb.org) has been rede
database summary
PRGdb Walter Sanseverino, Guglielmo Roma, Marco De Simone, Luigi Faino, Sara Melito, Elia Stupka, Luigi Frusciante, and Maria Raffaella Ercolano
Plant disease resistance genes
database summary
Plant disease resistance genes
database summary
PRIDB Benjamin A. Lewis, Rasna R. Walia, Michael Terribilini, Jeff Ferguson, Charles Zheng, Vasant Honavar, and Drena Dobbs
Protein-RNA Interface Database
database summary
Protein-RNA Interface Database
database summary
PRIDE Jones P.1, Côté R.G.1, Martens L.2, Quinn A.F.1, Taylor C.F.1, Derache W.1, Hermjakob H.1 and Apweiler R.1
Proteomics peptide identification database
database summary
Proteomics peptide identification database
database summary
PRIDE Vizcaino, Juan Antonio; Perez-Riverol, Yasset; Bai, Jingwen; Bandla, Chakradhar; Garcia-Seisdedos, David; Hewapathirana, Suresh; Kamatchinathan, Selvakumar; Kundu, Deepti J.; Prakash, Ananth; Frericks-Zipper, Anika; Eisenacher, Martin; Walzer, Mathias; Wa
The PRIDE database resources in 2022: A Hub for mass spectrometry-based pro
database summary
The PRIDE database resources in 2022: A Hub for mass spectrometry-based pro
database summary
PrimerBank Athanasia Spandidos, Xiaowei Wang, Huajun Wang, and Brian Seed
PCR primers for human and mouse genes
database summary
PCR primers for human and mouse genes
database summary
PRINTS Attwood, T.K.1, Bradley, P.1,2, Gaulton, A.1, Maudling, N. 1, Mitchell, A.1,2, Moulton, G.1
Hierarchical gene family fingerprints
database summary
Hierarchical gene family fingerprints
database summary
Pristionchus.org Dieterich C., Roeseler W., Sobetzko P. and Sommer R.J.
Genome data of the nematode Pristionchus pacificus
database summary
Genome data of the nematode Pristionchus pacificus
database summary
PRMD Liu, Qi; Lang, Xiaoqiang; Yu, Chunyan; Mengyuan, Shen; Gu, Lei; Qian, Qian; Zhou, Degui; Tan, Jiantao; Li, Yiliang; Peng, Xin; Deng, Zhujun; Diao, Shu; Ruan, Zhaohui; Xu, Zhi; Xing, Junlian; Li, Chen; Ding, Changjun; Cao, Yi
PRMD: an integrated database for plant RNA modifications
database summary
PRMD: an integrated database for plant RNA modifications
database summary
PRO Natale, Darren; Arighi, Cecilia; Blake, Judith; Bult, Carol; Christie, Karen; Cowart, Julie; D'Eustachio, Peter; Diehl, Alexander; Drabkin, Harold; Helfer, Olivia; Huang, Hongzhan; Masci, AnnaMaria; Ren, Jia; Roberts, Natalia; Ross, Karen; Ruttenberg, Alan; Shamovsky, Veronica; Smith, Barry; Yerramalla, Meher; Zhang, Jian ,; AlJanahi, Aisha; Gan, Cynthia; Çelen, Irem; Lv, Mengxi; Schuster-Lezell, Emily; Wu, Cathy H
Protein Ontology, encompasses a sub-ontology of proteins based on evolutionary relatedness (ProEvo) and a sub-ontology of the multiple protein forms produced from a given gene (ProForm)
database summary
Protein Ontology, encompasses a sub-ontology of proteins based on evolutionary relatedness (ProEvo) and a sub-ontology of the multiple protein forms produced from a given gene (ProForm)
database summary
probeBase Loy A., Maixner, F, Wagner M. and Horn M.
rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts, and associated information
database summary
rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts, and associated information
database summary
proCHiPdb Palsson, Bernhard; Decker, Katherine; Gao, Ye; Rychel, Kevin; Al Bulushi, Tahani; Chauhan, Siddharth; Kim, Donghyuk,; Cho, Byung-Kwan
Chromatin immunoprecipitation database for prokaryotic organisms
database summary
Chromatin immunoprecipitation database for prokaryotic organisms
database summary
ProDom Courcelle E., Beausse Y., Carrère, S., Bru C., Dalmar S., Kahn D.
Protein domain families
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Protein domain families
database summary
PRODORIC Dudek, Christian-Alexander; Jahn, Dieter
PRODORIC: state-of-the-art database of prokaryotic gene regulation
database summary
PRODORIC: state-of-the-art database of prokaryotic gene regulation
database summary
PRODORIC2 Eckweiler, Denitsa; Dudek, Christian-Alexander; Hartlich, Juliane; Broetje, David; Jahn, Dieter
No description supplied
database summary
No description supplied
database summary
Progenetix Cai, Haoyang; Kumar, Nitin; Gupta, Saumya; Rath, Prisni; Ai, Ni; Baudis, Michael Baudis
Copy number abnormalities in human cancer from comparative genomic hybridization experiments
database summary
Copy number abnormalities in human cancer from comparative genomic hybridization experiments
database summary
proGenomes Fullam, Anthony; Letunic, Ivica,; Schmidt, Thomas S; Ducarmon, Quinten R.; Karcher, Nicolai; Khedkar, Supriya; Kuhn, Michael; Larralde, Martin; Maistrenko, Oleksandr; Malfertheiner, Lukas; Milanese, Alessio; Rodrigues, Joao Frederico Matias; Sanchis-López
proGenomes3: approaching providing one million accurately and consistently
database summary
proGenomes3: approaching providing one million accurately and consistently
database summary
PROMISCUOUS Gohlke, Björn; Gallo, Kathleen; Goede, Andrean; Eckert, Andreas; Moahamed, Barbara; Preissner, Robert
Protein-protein and drug-protein interactions for studies of drug repositioning
database summary
Protein-protein and drug-protein interactions for studies of drug repositioning
database summary
ProNAB Gromiha, Michael; Harini, Kannan; Srivastava, Ambuj; Kulandaisamy, Arulsamy
Protein-Nucleic Acid Binding affinity
database summary
Protein-Nucleic Acid Binding affinity
database summary
ProPan Xiao, Jingfa; Zhang, Yadong; Zhang, Hao; Zhang, Zaichao; Qian, Qiheng; Zhang, Zhewen
Prokaryotic pan-genomes
database summary
Prokaryotic pan-genomes
database summary
PROPHECY Fernandez-Ricaud L.1, Warringer J.1, Ericson E.1, Glaab K.1, Davidsson P.1, Nilsson F1, Kemp G.J.L.3, Nerman O.2 and Blomberg A.1
Profiling of phenotypic characteristics in yeast
database summary
Profiling of phenotypic characteristics in yeast
database summary
ProRule Sigrist C.J.A.1, Bairoch A.1,2, Bulliard V.1, De Castro E.1, Langendijk-Genevaux P.S.1 and Hulo N.1
Functional and structural information on PROSITE profiles
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Functional and structural information on PROSITE profiles
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ProSAS
Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure
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Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure
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PROSITE Hulo, N., Sigrist, C.J.A., Langendijk-Genevaux, P., Le Saux, V., Bairoch, A.
Biologically-significant protein patterns and profiles
database summary
Biologically-significant protein patterns and profiles
database summary
PROTAC-DB Hou, Tingjun; Weng, Gaoqi; Cai, Xuanyan; Cao, Dong-Sheng; Du, Hongyan; Shen, Chao; Deng, Yafeng; He, Qiaojun; Yang, Bo; Li, Dan
PROTAC-DB 2.0: an updated database of PROTACs
database summary
PROTAC-DB 2.0: an updated database of PROTACs
database summary
PROTAC-DB Hou, Tingjun. (proxy) (contact); Weng, Gaoqi; Shen, Chao; Cao, Dong-Sheng; Gao, Junbo; Dong, Xiaowu; He, Qiaojun; Yang, Bo; Li, Dan.`; Wu, Jian
Proteolysis-targeting chimeras (PROTACs)
database summary
Proteolysis-targeting chimeras (PROTACs)
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Protegen Brian Yang 1,2,3, Samantha Sayers 1,2,4, Zuoshuang Xiang 1,2,5 and Yongqun He 1,2,5
Protective antigen database and analysis system
database summary
Protective antigen database and analysis system
database summary
Protein Clusters
Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes
database summary
Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes
database summary
Protein Geometry Database Donald S. Berkholz, Peter B. Krenesky, John R. Davidson, and P. Andrew Karplus
Protein conformation and bond angles and lengths
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Protein conformation and bond angles and lengths
database summary
Protein kinase resource
Protein kinase sequences, enzymology, genetics, and molecular and structural properties.
database summary
Protein kinase sequences, enzymology, genetics, and molecular and structural properties.
database summary
Protein Naming Utility Johannes Goll, Robert Montgomery, Lauren M. Brinkac, Seth Schobel, Derek M. Harkins, Yinong Sebastian, Susmita Shrivastava, Scott Durkin, and Granger Sutton
Repository of protein names and naming rules
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Repository of protein names and naming rules
database summary
Protein-protein interfaces
Interacting residues in protein-protein interfaces in PDB
database summary
Interacting residues in protein-protein interfaces in PDB
database summary
Proteome-pI 2.0 Kozlowski, Lukasz
Pre-computed isoelectric points for proteomes of >5000 organisms
database summary
Pre-computed isoelectric points for proteomes of >5000 organisms
database summary
ProteomeScout Naegle, Kristen; Holehouse, Alex; Matlock, Matthew
Proteomics of post-translational modifications
database summary
Proteomics of post-translational modifications
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ProteomeXchange Eric W Deutsch, Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy J Carver, Luis Mendoza, Deepti J Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio VizcaÃno
The ProteomeXchange Consortium
database summary
The ProteomeXchange Consortium
database summary
ProteomicsDB Wilhelm, Mathias; Lautenbacher, Ludwig; Samaras, Patroklos; Mueller, Julian; Grafberger, Andreas; Shraideh, Marwin; Rank, Johannes; Fuchs, Simon; Schmidt, Tobias K; The, Matthew; Dallago, Christian; Wittges, Holger; Rost, Burkard; Krcmar, Helmut; Kuster,
ProteomicsDB: Towards a FAIR open-source resource for life-science research
database summary
ProteomicsDB: Towards a FAIR open-source resource for life-science research
database summary
ProteomicsDB Tobias Schmidt, Patroklos Samaras, Martin Frejno, Siegfried Gessulat, Maximilian Barnert, Harald Kienegger, Helmut Krcmar, Judith Schleg, Hans-Christian Ehrlich, Stephan Aiche, Bernhard Kuster, Mathias Wilhelm
ProteomicsDB is a joint effort of the Technische Universität München (TUM) and SAP SE. It is dedicated to expedite the identification of the human proteome and its use across the scientific community.
database summary
ProteomicsDB is a joint effort of the Technische Universität München (TUM) and SAP SE. It is dedicated to expedite the identification of the human proteome and its use across the scientific community.
database summary
ProTherm Gromiha, Michael; Nikam, Rahul; Kulandaisamy, A.; Harini, K.; Sharma, Divya
Thermodynamic data for wild-type and mutant proteins
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Thermodynamic data for wild-type and mutant proteins
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ProtoNet Linial, Michal; Rappoport, Nadav; Karsenty, Solange; Stern, Amos; Linial, Nathan
Hierarchical clustering of SWISS-PROT proteins
database summary
Hierarchical clustering of SWISS-PROT proteins
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PRTAD Sun X.1, Di Wu2, Jernigan R.1,3, Wu Z.1,4
Protein Residue Torsion Angle Distributions
database summary
Protein Residue Torsion Angle Distributions
database summary
PseudoBase++ Batenburg, F.H.D. van1, Gultyaev, A.P.1, Pleij, C.W.A.2
Structural, functional and sequence data related to RNA pseudoknots
database summary
Structural, functional and sequence data related to RNA pseudoknots
database summary
PseudoGene Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P. and Gerstein M.
Pseudogenes in eukaryotic and prokaryotic genomes
database summary
Pseudogenes in eukaryotic and prokaryotic genomes
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Pseudomonas Genome Database Brinkman, F. and Geoff Winsor, G.
Pseudomonas genome database and community annotation project
database summary
Pseudomonas genome database and community annotation project
database summary
PSORTdb Brinkman, Fiona; Lau, Wing Yin Venus; Hoad, Gemma L; Jin, Vivian; Winsor, Geoffrey; Madyan, Ashmeet; Gray, Kristen; Laird, Matthew R; Lo, Raymond
Protein subcellular localization in bacteria
database summary
Protein subcellular localization in bacteria
database summary
PSSRdb Pankaj Kumar, Pasumarthy S. Chaitanya, and Hampapathalu A. Nagarajaram
Polymorphic Simple Sequence Repeats Database
database summary
Polymorphic Simple Sequence Repeats Database
database summary
PTGL Patrick May, Annika Kreuchwig, Thomas Steinke, and Ina Koch
Protein Topology Graph library: Secondary structure-based protein topologies
database summary
Protein Topology Graph library: Secondary structure-based protein topologies
database summary
PTMcode Peer Bork
Functional associations between posttranslational modifications within proteins
database summary
Functional associations between posttranslational modifications within proteins
database summary
PubAngioGen Yi, Zhengfang; Li, Peng; Liu, Yongrui; Wang, Huan; He, Yuan; Wang, Xue; He, Yundong; Lv, Fang; Chen, Huaqing; Pang, Xiufeng; Liu, Mingyao; Shi, Tieliu
Public angiogenesis research portal
database summary
Public angiogenesis research portal
database summary
PubChem Bolton, Evan; Kim, Sunghwan; Chen, Jie'; Cheng, Tiejun; Gindulyte, Asta; He, Jane; He, Siqian; Li, Qingliang.; Shoemaker, Benjamin; Thiessen, Paul; Yu, Bo.; Zaslavsky, Leonid; Zhang, Jian
Structures and biological activities of small organic molecules
database summary
Structures and biological activities of small organic molecules
database summary
Pubchem Kim, Sunghwan; Chen, Jie'; Cheng, Tiejun; Gindulyte, Asta; He, Jane; He, Siqian; Li, Qingliang.; Shoemaker, Benjamin; Thiessen, Paul; Yu, Bo.; Zaslavsky, Leonid; Zhang, Jian!; Bolton, Evan
PubChem is the world's largest collection of freely accessible chemical inf
database summary
PubChem is the world's largest collection of freely accessible chemical inf
database summary
PULDB Terrapon, Nicolas; Lombard, Vincent; Drula, Elodie; Lapébie, Pascal; Al-Masaudi, Saad; Gilbert, Harry; Henrissat, Bernard
No description supplied
database summary
No description supplied
database summary
pVOGs Ana Laura Grazziotin1, Eugene V. Koonin2 and David M. Kristensen1,2
Prokaryotic virus orthologous groups of proteins
database summary
Prokaryotic virus orthologous groups of proteins
database summary
PyIgClassify Dunbrack, Roland; Adolf-Bryfogle, Jared; Xu, Qifang; North, Benjamin; Lehmann, Andreas
Clusters of conformations of antibody CDRs
database summary
Clusters of conformations of antibody CDRs
database summary
qPrimerDB Lu, Kun; LI, Tian; He, Jian; Chang, Wei; Zhang, Rui`,; Liu, Miao; Yu, Mengna; Fan, Yonghai; Sun, Wei``; Ma, Jinqi; Qu, Cunmin; Liu, Liezhao; Li, Nannan; Liang, Yin; Wang, Rui; Tang, Zhanglin; Qian, Wei; Xu, Xinfu; Lei, Bo; Zhang, Kai; Li, Jiana
Real-time quantitative polymerase chain reaction (qPCR) is one of the most
database summary
Real-time quantitative polymerase chain reaction (qPCR) is one of the most
database summary
qPrimerDepot
Quantitative real time PCR primers for human and mouse RefSeq sequences
database summary
Quantitative real time PCR primers for human and mouse RefSeq sequences
database summary
qPTM Liu, Zexian; Yu, Kai; Wang, Ye; Zheng, Yongqiang; Liu, Zekun; Zhang, Qingfeng2; Wang, Siyu; Zhao, Qi ,; Zhang, Xiaolong; Li, Xiaoxing; Xu, Rui-Hua
Quantitative Post-Translational Modifications
database summary
Quantitative Post-Translational Modifications
database summary
qPTMplants Cheng, Han; Xue, Han; Zhang, Qingfeng2; Wang, Panqin; Cao, Bijin; Jia, Chongchong; Cheng, Ben; Shi, Yuhua; Guo, Wei-Feng; Wang, Zhenlong; Liu, Ze-Xian
Plant PTMs, including quantitation
database summary
Plant PTMs, including quantitation
database summary
QTL Matchmaker Star K.V.1,2, Song Q.2, Zhu A.2 and Böttinger E.P.2
Quantitative trait loci information for human, mouse and rat
database summary
Quantitative trait loci information for human, mouse and rat
database summary
QTLbase Li, Mulin Jun; Huang, Dandan; Feng, Xiangling; Yang, Hongxi; Wang, Jianhua; Zhang, Wenwen; Fan, Xutong; Chen, Kexin; Yu, Ying``; Yi, Xianfu; Ma, Xin; Dong, Xiaobao
QTLbase2: an enhanced catalog of human quantitative trait loci on extensive
database summary
QTLbase2: an enhanced catalog of human quantitative trait loci on extensive
database summary
QUADRAtlas Dassi, Erik; Bourdon, Sébastien; Dumas, Leïla; Herviou, Pauline; Destefanis, Eliana; Zen, Andrea; Cammas, Anne; millevoi, stefania
RNA G-Quadruplex and RG4-binding proteins
database summary
RNA G-Quadruplex and RG4-binding proteins
database summary
QUADRatlas bourdon, Sébastien; Herviou, Pauline; Dumas, Leïla; Destefanis, Eliana; Zen, Andrea; Cammas, Anne; Millevoi, Stefania; Dassi, Erik
QUADRatlas is the RNA G-quadruplex and RG4-binding proteins database.
database summary
QUADRatlas is the RNA G-quadruplex and RG4-binding proteins database.
database summary
R-loopBase Chen, Jia-Yu; Lin, Ruoyao; Zhong, Xiaoming; Zhou, Yongli; Geng, Huichao; Hu, Qingxi; Huang, Zhihao; Hu, Jun; Fu, Xiang-Dong; Chen, Liang
R-loops and R-loop regulators
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R-loops and R-loop regulators
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R-LoopDB Kuznetsov, Vladimir; Jenjaroenpun, Piroon; Wongsurawat, Thidathip; Sutheeworapong, Sawannee
R-loop forming sequences
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R-loop forming sequences
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R.E.DD.B.
RESP and ESP atomic charges and force field libraries for small molecules and molecular fragments
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RESP and ESP atomic charges and force field libraries for small molecules and molecular fragments
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RABC Chen, Haiyan; Xu, Jing,; Wei, Siyu; Jia, Zhe; Sun, Chen; Kang, Jingxuan; Guo, Xuying; Zhang, Nan; Tao, Junxian; Dong, Yu; Zhang, Chen; Ma, Yingnan; Lv, Wenhua; Tian, Hongsheng; Bi, Shuo; Lv, Hongchao; Huang, Chen; Kong, Fanwu; Tang, Guoping; Jiang, Yongsh
Multi-omics of Rheumatoid Arthritis
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Multi-omics of Rheumatoid Arthritis
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RADAR Ramaswami, Gokul; Li, Jin Billy
A Rigorously Annotated Database of A-to-I RNA editing
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A Rigorously Annotated Database of A-to-I RNA editing
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RaftProt Shah, Anup; Chen, David; Boda, Akash; Foster, Leonard; Davis, Melissa; Hill, Michelle M
Lipid raft associated proteins in mammals
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Lipid raft associated proteins in mammals
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RAID Wang, Dong; Yi, Ying; Zhao, Yue; Li, Chunhua; Zhang, Lin.,; Huang, Huiying; Li, YaNa; Liu, Lanlan; Hou, Ping; Cui, Tianyu; Tan, Puwen; Hu, Yongfei; Zhang, Ting'.; Huang, Yan.; li, xiaobo; Yu, Jia
Human RNA-RNA and RNA-protein interactions
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Human RNA-RNA and RNA-protein interactions
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RAP-DB Ohyanagi H.1,2, Tanaka T.3, Sakai H.3, Shigemoto Y.1,4, Yamaguchi K.5, Habara T.5,6, Fujii Y.5,6, Antonio B.A.3, Nagamura Y.3, Imanishi T.6, Ikeo K.1, Itoh T.3,6, Gojobori T.1,6 and Sasaki T.3
The Rice Annotation Project database
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The Rice Annotation Project database
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RARGE - RIKEN Arabidopsis Genome Encyclopedia
Arabidopsis cDNAs, mutants and microarray data
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Arabidopsis cDNAs, mutants and microarray data
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RASP Zhang, Qiangfeng; Li, Pan.; Zhou, Xiaolin; Xu, Kui
RNA secondary structure probing data
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RNA secondary structure probing data
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RAVAR Cao, Chen; Shao, Mengting; Zuo, Chunman; Kwok, Devin; Liu, Lin; Ge, Yuli; Zhang, Zilong; Cui, Feifei; Chen, Mingshuai; Fan, Rui; Ding, Yijie; Jiang, Hangjin; Wang, Guishen; Zou, Quan.
RAVAR: a curated repository for rare variant-trait associations
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RAVAR: a curated repository for rare variant-trait associations
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RBP-Var Sun, Zhongsheng; Mao, Fengbiao; Xiao, Luoyuan; Li, Xianfeng; Teng, Huajing.; Cai, Wanshi
Human genome variants which could change the RNA structure and affect RNA-protein interactions
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Human genome variants which could change the RNA structure and affect RNA-protein interactions
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RBP2GO Caudron-Herger, Maiwen; Jansen, Ralf; Wassmer, Elsa; Diederichs, Sven
RNA-binding proteins across species
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RNA-binding proteins across species
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RBPDB Kate B. Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, and Timothy R. Hughes
RNA-binding proteins and their specificities
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RNA-binding proteins and their specificities
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RBPimage Benoit Bouvrette, Louis Philip; Wang, Xiaofeng; Boulais, Jonathan; Kong, Jian; Uddin Syed, Easin; Blue, Steven; Zhan, Lijun; Olson, Sara; Stanton, Rebecca; Wei, Xintao; Yee, Brian; Van Nostrand, Eric; Fu, Xiang-Dong; Burge, Chris; Graveley, Brenton R.; Ye
Microscopy reporting subcellular distribution of human RNA binding proteins
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Microscopy reporting subcellular distribution of human RNA binding proteins
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RCSB Burley, Stephen; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chao, Henry; Chen, Li; Craig, Paul A.; Crichlow, Gregg; Dalenberg, Kenneth; Duarte, Jose; Dutta, Shuchismita; Fayazi, Maryam; Feng, Zukang; Flatt, Justin W.; Ganesan, Sai; Ghosh, Sutap
RCSB Protein Data Bank (RCSB.org): Delivery of Experimentally-Determined PD
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RCSB Protein Data Bank (RCSB.org): Delivery of Experimentally-Determined PD
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RCSB Protein Data Bank Burley, Stephen; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chen, Li,`; Crichlow, Gregg; Christie, Cole; Dalenberg, Kenneth; Di Costanzo, Luigi; Duarte, Jose; Dutta, Shuchismita; Feng, Zukang; Ganesan, Sai; Goodsell, David; Ghosh, Sutapa; Krame
All biological macromolecular structures
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All biological macromolecular structures
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Reactome Croft D, Mundo AF, Haw R, Milacic M, Weiser J, Wu G, Caudy M, Garapati P, Gillespie M, Kamdar MR, Jassal B, Jupe S, Matthews L, May B, Palatnik S, Rothfels K, Shamovsky V, Song H, Williams M, Birney E, Hermjakob H, Stein L, D'Eustachio P.
A database of metabolic and signaling pathways
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A database of metabolic and signaling pathways
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Reactome D'Eustachio, Peter G; Milacic, Marija; Beavers, Deidre; Conley, Patrickinactive; Gong, Chuqiao; Gillespie, Marc; Griss, Johannes; Haw, Robin; Jassal, Bijay; Matthews, Lisa; May, Bruce; Petryszak, Robert; Ragueneau, Eliot; Rothfels, Karen; Sevilla, Cristoffer; Shamovsky, Veronica; Stephen, Ralf; Tiwari, Krishna; Varusai, Thawfeek; Weiser, Joel; Wu, Guanming; Stein, Lincoln.; Hermjakob, Henning
The Reactome Knowledgebase (https://reactome.org) provides molecular detail
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The Reactome Knowledgebase (https://reactome.org) provides molecular detail
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Reactome D'Eustachio, Peter G; Gillespie, Marc; Jassal, Bijay; Stephen, Ralf; Milacic, Marija; Rothfels, Karen; Senff-Ribeiro, Andrea; Griss, Johannes; Sevilla, Cristoffer; Matthews, Lisa; Gong, Chuqiao; Deng, Chuan; Varusai, Thawfeek; Ragueneau, Eliot; Haider, Yu
The Reactome Pathway Knowledgebase 2022
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The Reactome Pathway Knowledgebase 2022
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REBASE Roberts, Rich; Posfai, Janos; Vincze, Tamas; Macelis, Dana
Restriction enzymes and associated methylases
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Restriction enzymes and associated methylases
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REBASE Roberts, Richard; Vincze, Tamas; Posfai, Janos; Macelis, Dana
REBASE - A Database for DNA Restriction and Modification: Enzymes, Genes an
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REBASE - A Database for DNA Restriction and Modification: Enzymes, Genes an
database summary
REDIportal Picardi, Ernesto; Mansi, Luigi; Tangaro, Marco Antonio; Lo Giudice, Claudio; Flati, Tiziano; Kopel, Eli; Schaffer, Amos; Castrignanò, Tiziana; Chillemi, Giovanni; Pesole, Graziano
A-to-I RNA editing events in human
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A-to-I RNA editing events in human
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RefMetaPlant Li, Xuan; Shi, Han; Wu, Xueting; Zhu, Yan; Jiang, Tao; Wang, Zhengwei; Li, Xuetong; Liu, Jianju; Zhang, YIngxue; Chen, Feng; Gao, Jinshan; Xu, Xiaoyan; Zhang, Guo-Qing; Xiao, Ning; Feng, Xianzhong; Zhang, Peng; Wu, Yongrui; Hu, Yonghong; Li, Aihong; Chen, Ping
RefMetaPlant: a reference metabolome database for plants across five major phyla
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RefMetaPlant: a reference metabolome database for plants across five major phyla
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RefSeq Thibaud-Nissen, Francoise; Haft, Daniel H.; Badretdin, Azat; Coulouris, George; DiCuccio, Michael; Durkin, A; Jovenitti, Eric; Li, Wenjun; Mersha, Megdelawit; O'Neill, Kathleen; Virothaisakun, Joel
The Reference Sequence (RefSeq) project at the National Center for Biotechn
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The Reference Sequence (RefSeq) project at the National Center for Biotechn
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RefSeq (microbial) Tatusova, Tatiana (proxy); Ciufo, Stacy; Federhen, Scott; Fedorov, Boris; McVeigh, Richard; O'Neill, Kathleen; Zaslavsky, Leonid
The National Center for Biotechnology Information Reference Sequence (RefSe
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The National Center for Biotechnology Information Reference Sequence (RefSe
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Regeneration Roadmap Liu, Guang-Hui; Kang, Wang; Jin, Tong; Zhang, Tao .; Ma, Shuai; Yan, Haoteng; LIU, ZUNPENG; Ji, Zhejun; Cai, Yusheng; Wang, Si; SONG, Moshi; REN, JIE; Zhou, Qi; qu, jing; ZHANG, WEIQI; Bao, Yi-Ming
Literature and multi-omics data on cell regeneration
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Literature and multi-omics data on cell regeneration
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RegPhos Tzong-Yi Lee 1, Justin Bo-Kai Hsu 2, Wen-Chi Chang 3 and Hsien-Da Huang 2,4,5
Regulatory Network in Protein Phosphorylation
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Regulatory Network in Protein Phosphorylation
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RegPrecise Pavel S. Novichkov, Olga N. Laikova, Elena S. Novichkova, Mikhail S. Gelfand, Adam P. Arkin, Inna Dubchak, and Dmitry A. Rodionov
Predicted regulons in prokaryotic genomes
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Predicted regulons in prokaryotic genomes
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RegTransBase Kazakov A.E.1, Cipriano M.J.2, Novichkov P.S.3,4, Minovitsky S.2, Vinogradov D.V.1, Arkin A.2,4,5,6, Mironov A.A.1,7,8, Gelfand M.S.1,7,8,10, Dubchak I.2,9,10
Manually curated database of regulatory interactions in prokaryotes
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Manually curated database of regulatory interactions in prokaryotes
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RegulonDB Collado-Vides, Julio; Salgado, Heladia; Gama-Castro, Socorro; Mejia-Almonte, Citlalli; Lara, Paloma; Alarcón-Carranza, Gabriel; López-Almazo, Andrés G.; Betancourt-Figueroa, Felipe; Peña-Loredo, Pablo; Alquicira-Hernández, Shirley; Ledezma-Tejeida, Daniel
RegulonDB 12.0: Key transformative improvements in the modeling and conceptualization of transcriptional regulation in E. coli K-12
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RegulonDB 12.0: Key transformative improvements in the modeling and conceptualization of transcriptional regulation in E. coli K-12
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RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 Santos-Zavaleta, Alberto;Salgado, Heladia;Gama-Castro, Socorro;Sánchez-Pérez, Mishael;Gómez-Romero, Laura;Ledezma-Tejeida, Daniela;GarcÃÂa-Sotelo, Jair Santiago;Alquicira-Hernández, Kevin;Muñiz-Rascado, Luis José;Peña-Loredo, Pablo;Ishida-Gutiérrez, Cecilia;Velázquez-RamÃÂrez, David A;Del Moral-Chávez, VÃÂctor;Bonavides-MartÃÂnez, César;Méndez-Cruz, Carlos-Francisco;Galagan, James;Collado-Vides, Julio
No description supplied
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No description supplied
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ReMap Ballester, Benoit; Hammal, Fayrouz; de Langen, Pierre; Bergon, Aurélie; Lopez, Fabrice
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulato
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ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulato
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ReMap Ballester, Benoit; Chèneby, Jeanne; Gheorghe, Marius; Artufel, Marie; Mathelier, Anthony
With this latest release of ReMap (http://remap.cisreg.eu), we present a un
database summary
With this latest release of ReMap (http://remap.cisreg.eu), we present a un
database summary
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments Chèneby, Jeanne;Ménétrier, Zacharie;Mestdagh, Martin;Rosnet, Thomas;Douida, Allyssa;Rhalloussi, Wassim;Bergon, Aurélie;Lopez, Fabrice;Ballester, Benoit
No description supplied
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No description supplied
database summary
REPAIRtoire Kaja Milanowska, Joanna Krwawicz, Grzegorz Papaj, Jan Kosi?ski, Katarzyna Poleszak, Justyna Lesiak, Ewelina Osi?ska, Kristian Rother, and Janusz M. Bujnicki
DNA repair pathways of human, yeast and E.coli
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DNA repair pathways of human, yeast and E.coli
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RepeatsDB Tosatto, Silvio; Paladin, Lisanna; Bevilacqua, Martina; Errigo, Sara; Piovesan, Damiano; MiÄ\x8Detić, Ivan; Necci, Marco; Monzon, Alexander; Fabre, Maria Laura; Lopez, Jose Luis; Nilsson, Juliet; Rios, Javier; Lorenzano Menna, Pablo; Cabrera, Maia; Gonzalez B
Repeats in protein structures
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Repeats in protein structures
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ReplicationDomain (alias ChromosomeDomain) Weddington, N., Stuy, A., Hiratani, I., Ryba, T., Yokochi, T., and Gilbert, D.M.
ReplicationDomain: Replication timing database and genome-wide data visualization tool. ChromosomeDomain: database of any chromosome features tied to a map unit.
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ReplicationDomain: Replication timing database and genome-wide data visualization tool. ChromosomeDomain: database of any chromosome features tied to a map unit.
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RepoDB Adam S. Brown & Chirag J. Patel
Drug repositioning, the process of discovering, validating, and marketing p
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Drug repositioning, the process of discovering, validating, and marketing p
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RepTar Naama Elefant, Amnon Berger, Harel Shein, Matan Hofree, Hanah Margalit, and Yael Altuvia
Predicted targets of host and viral miRNAs
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Predicted targets of host and viral miRNAs
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RetNet Lori S Sullivan, Sara J Bowne, Stephen P. Daiger
RetNet provides tables of genes and loci causing inherited retinal diseases
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RetNet provides tables of genes and loci causing inherited retinal diseases
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RetrOryza Chaparro C.1, Guyot R.1, Zuccolo A.2, Piégu B.1 and Panaud O.1
LTR-retrotransposons in rice
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LTR-retrotransposons in rice
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Rfam Nawrocki, Eric; Burge, Sarah W; Bateman, Alex; Daub, Jennifer; Eberhardt, Ruth; Eddy, Sean; Floden, Evan; Gardner, Paul; Jones, Thomas; Tate, John; Finn, Robert
No description supplied
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No description supplied
database summary
Rfam Petrov, Anton; Kalvari, Ioanna; Nawrocki, Eric; Ontiveros-Palacios, Nancy; Argasinska, Joanna; Lamkiewicz, Kevin; Marz, Manja; Griffiths-Jones, Sam; Toffano-Nioche, Claire; Gautheret, Daniel; Weinberg, Zasha; Rivas, Elena; Eddy, Sean R; Finn, Robert; Bateman, Alex
No description supplied
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No description supplied
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RGD Jiang, Yu; Fu, Weiwei; Wang, Rui; Asadollahpour Nanaei, Hojjat; Wang, Jinxin; Hu, Dexiang
Ruminant Genome Database
database summary
Ruminant Genome Database
database summary
Rhea Morgat, Anne; Axelsen, Kristian; Lombardot, Thierry; Alcántara, Rafael; Aimo, Lucila; Zerara, Mohamed; Niknejad, Anne; Belda, Eugeni; Hyka-Nouspikel, Nevila; Coudert, Elisabeth; Redaschi, Nicole; Bougueleret, Lydie; Steinbeck, Christoph; Xenarios, Ioannis; Bridge, Alan
Expert-curated biochemical reactions
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Expert-curated biochemical reactions
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Rhea Bridge, Alan J; Bansal, Parit; Morgat, Anne; Axelsen, Kristian; Muthukrishnan, Venkatesh; Coudert, Elisabeth; Aimo, Lucila; Hyka-Nouspikel, Nevila; Gasteiger, Elisabeth; Kerhornou, Arnaud; Neto, Teresa; Pozzato, Monica; Blatter, Marie-Claude; Ignatchenko,
Rhea, the reaction knowledgebase in 2022
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Rhea, the reaction knowledgebase in 2022
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RhesusBase Shi-Jian Zhang1,#, Chu-Jun Liu1,#, Mingming Shi1,#, Lei Kong2, Jia-Yu Chen1, Wei-Zhen Zhou2, Xiaotong Zhu1, Peng Yu1, Jue Wang1, Xinzhuan Yang1, Ning Hou1, Zhiqiang Ye3, Rongli Zhang1, Ruiping Xiao1, Xiuqin Zhang1,* and Chuan-Yun Li1,*
A Knowledgebase for the Monkey Research Community
database summary
A Knowledgebase for the Monkey Research Community
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Ribocentre Huang, Lin; Deng, Jie; Shi, Yaohuang; Peng, Xuemei; He, Yuanlin; Chen, Xiaoxue; Li, Mengxiao; Lin, Xiaowei; Liao, Wenjian; Huang, Yuanyin; Jiang, Taijiao; Lilley, David; Miao, Zhichao
Ribozymes
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Ribozymes
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Ribocentre-switch Huang, Lin; Bu, Fan; Lin, Xiaowei; Liao, Wenjian; Lu, Zhizhong; He, Yuanlin; Luo, Yuhang; Peng, Xuemei; Li, Mengxiao; Huang, Yuanyin; Chen, Xiaoxue; Xiao, Bowen; Jiang, Jiuhong; Deng, Jie; Huang, Jian; Lin, Tianxin; Miao, Zhichao
Ribocentre-switch: A database of riboswitches
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Ribocentre-switch: A database of riboswitches
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Ribosomal Database Project (RDP-II) Cole, J.R.1, Chai, B.1, Wang, Q.1, Chandra, S.1, Farris, R.J.1, Kulam, S.A.1, McGarrel, D.M.1, Schmidt, T.M.2, Garrity, G.M.2, Tiedje, J.M.2
rRNA sequence data, analysis tools, alignments, and phylogenies
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rRNA sequence data, analysis tools, alignments, and phylogenies
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Ribo_uORF Liu, Qi .; Peng, Xin; Mengyuan, Shen; Qian, Qian; Xing, Junlian; Gregory, Richard
uORFs from ribosome profiling data [MAKE MICRO]
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uORFs from ribosome profiling data [MAKE MICRO]
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Rice Gene Thresher
Web-based Application for Mining Genes Underlying QTLs in Rice Genome
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Web-based Application for Mining Genes Underlying QTLs in Rice Genome
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RiceFREND Baltazar Antonio
Rice Functionally Related gene Expression Network Database
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Rice Functionally Related gene Expression Network Database
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RiceGAAS Sakata K., Nagamura Y., Numa H., Antonio B.A., Nagasaki H., Idonuma A., Watanabe W., Shimizu Y., Horiuchi I., Matsumoto T., Sasaki T. and Higo K.
Rice genome automated annotation system
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Rice genome automated annotation system
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RiceVarMap Xie, Weibo; hu, zhao; Yao, Wen; Ouyang, Yidan; Yang, Wanneng; Wang, Gongwei; Lian, Xingming; Xing, Yongzhong; Chen, Ling-ling .
Rice Variation Map, SNPs and indels
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Rice Variation Map, SNPs and indels
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RiceXPro Yutaka Sato, Baltazar A. Antonio, Nobukazu Namiki, Hinako Takehisa, Hiroshi Minami, Kaori Kamatsuki, Kazuhiko Sugimoto, Yuji Shimizu, Hirohiko Hirochika, and Yoshiaki Nagamura
Rice transcriptome under natural conditions
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Rice transcriptome under natural conditions
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RIDOM - Ribosomal Differentiation of Medical Microorganisms Harmsen, D.1, Rothgänger, J.2, Sammeth, M.3, Albert, J.4
rRNA (16S and ITS) sequence-based identification of medical microorganisms
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rRNA (16S and ITS) sequence-based identification of medical microorganisms
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RIKEN mammals
Integrated database of mammalian genomes, phenotypes, strains and cell lines
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Integrated database of mammalian genomes, phenotypes, strains and cell lines
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RISE Zhang, Qiangfeng; Gong, Jing; Shao, Di; Xu, Kui; Lu, Zhipeng; Lu, Zhi; Yang, Yu-Cheng
No description supplied
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No description supplied
database summary
RJunBase Huang, Shenglin; Li, Qin; Lai, Hongyan; Li, Yuchen; Chen, Bing..; Li, Yan ..; Huang, Zhaohui; Meng, Zhiqiang; Wang, Peng5; hu, zhixiang
RNA splice junctions
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RNA splice junctions
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RLBase Bishop, Alexander; Miller, Henry; Montemayor, Daniel; Li, Janet; Levy, Simon; Pawar, Roshan; Hartono, Stella; Sharma, Kumar; Frost, Bess; Chédin, Frédéric
R-loops in the human genome
database summary
R-loops in the human genome
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RM2Target Bao, Xiaoqiong; Zhang, Yin; Li, Huiqin; Teng, Yuyan; Ma, Lixia; Chen, Zhihang; Zheng, Jian.; Zhao, An; Ren, Jian.; Zuo, Zhixiang
Targets of RNA modification proteins
database summary
Targets of RNA modification proteins
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RMBase Yang, Jian-Hua; Sun, Wen-Ju; Li, Jun-Hao; Liu, Shun; Wu, Jie .; Zhou, Hui`'; Qu, Liang-Hu
RNA Modification DataBase
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RNA Modification DataBase
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RMBase Yang, Jian-Hua ; Xuan, Jia-Jia; Chen, Lifan; Chen, Zhirong; Huang, Junhong; Lin, Jinran; Zheng, Lingling; Li, Bin; Qu, Liang-Hu
RMBase v3.0: Decode the Landscape, Mechanisms and Functions of RNA Modifications
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RMBase v3.0: Decode the Landscape, Mechanisms and Functions of RNA Modifications
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RMBase Yang, Jian-Hua; Xuan, Jia-Jia; Sun, Wen-Ju; Lin, Peng-Hui; Zhou, Ke-Ren; Liu, Shun; Zheng, Ling-Ling; Qu, Liang-Hu
No description supplied
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No description supplied
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RMDB Das, Rhiju; Yesselman, Joseph; Tian, Siqi; Liu, Xin; Shi, Lei; Li, Jin Billy
No description supplied
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No description supplied
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RMdisease Chen, Kunqi; Song, Bowen; Tang, Yujiao; Wei, Zhen.; Xu, Qingru; Magalhães, João Pedro de; Su, Jionglong; Meng, Jia; Rigden, Daniel J.
RMDisease V2.0: an updated database of genetic variants that affect RNA mod
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RMDisease V2.0: an updated database of genetic variants that affect RNA mod
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RMVar Zuo, Zhixiang; Luo, Xiaotong; Li, Huiqin; Liang, Jiaqi; Zhao, Qi ,; Xie, Yubin; Ren, Jian
Genetic variants that affect RNA modifications vs disease
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Genetic variants that affect RNA modifications vs disease
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RNA Bricks Chojnowski, Grzegorz; Walen, Tomasz; Bujnicki, Janusz
RNA structural modules and their interactions
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RNA structural modules and their interactions
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RNAdb Pang K.C.1,2, Stephen S.1, EngstrÖm P.G.3, Tajul-Arifin K.1, Chen W.2, Wahlestedt C.3, Lenhard B.3, Hayashizaki Y.4, and Mattick J.S.1
Mammalian noncoding RNA database
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Mammalian noncoding RNA database
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RNAdisease Wang, Dong; Chen, Jia; Lin, jiahao; Hu, Yongfei; Ye, Meijun; Yao, Linhui; Wu, Le; Zhang, Wenhai; Wang, Meiyi; Deng, Tingting; Huang, Yan; Zhu, Bofeng
RNADisease v4.0: an updated resource of RNA-associated diseases, providing
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RNADisease v4.0: an updated resource of RNA-associated diseases, providing
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RNAi codex Olson A., Sheth N., Lee J.S., Hannon G. and Sachidanandam R.
Available clones from mouse, human and rat shRNA libraries
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Available clones from mouse, human and rat shRNA libraries
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RNAInter Wang, Dong; Kang, Juanjuan; Tang, Qiang; He, Jun; Li, Le; Yang, Nianling; Yu, Shuiyan; Wang, Mengyao; Zhang, Yuchen; Lin, Jiahao; Cheng, Jun; Cui, Tianyu; Su, Xi; Huang, Yan; Chen, Wei
RNAInter v4.0: RNA interactome repository with redefined confidence scoring
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RNAInter v4.0: RNA interactome repository with redefined confidence scoring
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RNAInter in 2020: RNA interactome repository with increased coverage and annotation Lin, Yunqing;Liu, Tianyuan;Cui, Tianyu;Wang, Zhao;Zhang, Yuncong;Tan, Puwen;Huang, Yan;Yu, Jia;Wang, Dong
No description supplied
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No description supplied
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RNAJunction
RNA structural elements: helical junctions, internal loops, bulges and loop-loop interactions
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RNA structural elements: helical junctions, internal loops, bulges and loop-loop interactions
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RNALocate Wang, Dong; Cui, Tianyu; Dou, Yiying; Tan, Puwen; Ni, Zhen; Liu, Tianyuan; Wang, Duolin; Huang, Yan; Cai, Kaican; Zhao, Xiaoyang; Lin, Hao; Xu, Dong,
RNALocate v2.0: an updated resource for RNA subcellular localization with i
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RNALocate v2.0: an updated resource for RNA subcellular localization with i
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RNALocate Wang, Dong; Lin, Hao ,; Li, Kongning; Zhang, Ting; Tan, Puwen; Wang, Liqiang; Jin, Nana; Li, YaNa; Zhang, Lin.,; Yang, Huan; Hu, Zhenyu; Zhang, LiNing; Hu, Chunyu; Li, Chunhua; Qian, Kun; Zhang, Changjian; Huang, Yan.
RNA Localization in the cell
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RNA Localization in the cell
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RNAPhaSep Wang, Dong; Zhu, Haibo; Fu, Hao; Cui, Tianyu; Ning, Lin; Shao, Huaguo; Guo, Yehan; Ke, Yanting; Zheng, Jiayi; Lin, Hongyan; Wu, Xin; Liu, Guanghao; He, Jun; Han, Xin; Li, Wenlin; Zhao, Xiaoyang; Shen, Xiaopei; Hu, Kongfa
Biomolecular condensation partitions cellular contents and plays essential roles in stress responses, maintaining homeostasis, development and disease. Most studies focused on RNA-binding proteins in driving phase separation. However, in recent years accumulating evidence demonstrated that RNAs could also function as ‘scaffolds’ and contribute to seed or nucleate the formation of granules.
It is crucial to systematically summarize all the available experimental data to better understand RNAs’ role in phase separation. RNAPhaSep is a novel database that collects phase separation related RNAs manually curated from publication and public databases. Various properties of RNAs together with the corresponding phase separation conditions validated by experiments were collected and deposited into this database.
database summary
Biomolecular condensation partitions cellular contents and plays essential roles in stress responses, maintaining homeostasis, development and disease. Most studies focused on RNA-binding proteins in driving phase separation. However, in recent years accumulating evidence demonstrated that RNAs could also function as ‘scaffolds’ and contribute to seed or nucleate the formation of granules.
It is crucial to systematically summarize all the available experimental data to better understand RNAs’ role in phase separation. RNAPhaSep is a novel database that collects phase separation related RNAs manually curated from publication and public databases. Various properties of RNAs together with the corresponding phase separation conditions validated by experiments were collected and deposited into this database.
database summary
RNArchitecture Bujnicki, Janusz M.; Boccaletto, Pietro; Magnus, Marcin; Almeida, Catarina; Zyla, Adriana; Astha, Astha; Pluta, Radoslaw; Baginski, Blazej; Jankowska, Elzbieta; Dunin-Horkawicz, Stanislaw; Wirecki, Tomasz; Boniecki, Michal; Stefaniak, Filip
RNArchitecture is a database that provides a comprehensive description of r
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RNArchitecture is a database that provides a comprehensive description of r
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RNRdb Lundin D., Torrents E., Furrer E., Larsson Birgander P., Sahlin M., Poole A.M. and Sjöberg B.-M.
Ribonucleotide reductase database
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Ribonucleotide reductase database
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rOGED Gieske, M.C., Payne, C.E., Gieske, J.B., and CheMyong Ko
Rat ovarian gene expression database
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Rat ovarian gene expression database
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RPFdb Xie, Zhi; Xie, Shang-Qian; Nie, Peng; Wang, Yan`; Wang, Hongwei,; Li, Hongyu; Yang, Zhilong; Ren, Jian
Ribosome profiling database
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Ribosome profiling database
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RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling Wang, Hongwei;Yang, Ludong;Wang, Yan;Chen, Leshi;Li, Huihui;Xie, Zhi
No description supplied
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No description supplied
database summary
RPS Zuo, Zhixiang; Liu, Mengni; Li, Huiqin; Luo, Xiaotong; Cai, Jieyi; Chen, Tianjian; Xie, Yubin; Ren, Jian.
RNAs involved in liquid-liquid phase separation
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RNAs involved in liquid-liquid phase separation
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rVarbase Wang, Jing; Guo, Liyuan; Du, Yang; Qu, Susu
Annotated SNPs within regulatory DNA elements
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Annotated SNPs within regulatory DNA elements
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RVdb Zhao, Peng; Liu, Bo `; Su, Haoxiang; Han, Yelin; Xu, Panpan; Zhou, Siyu,; Hu, Yongfeng; Wu, Zhiqiang; Dong, Jie; Sui, Hongtao; Li, Xin; Yang, Jian,,; Zhang, Ting; Yang, Fan15
RVdb: A Comprehensive Database and Integrated Analysis Platform for Rhinovirus Research
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RVdb: A Comprehensive Database and Integrated Analysis Platform for Rhinovirus Research
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SAbDab Schneider, Constantin; Raybould, Matthew; Deane, Charlotte
SAbDab-nano: A comprehensive and continuously updated database of nanobody
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SAbDab-nano: A comprehensive and continuously updated database of nanobody
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SAbDab Deane, Charlotte; Dunbar, James; Krawczyk, Konrad; Leem, Jinwoo; Baker, Terence; Fuchs, Angelika; Georges, Guy; Shi, Jiye
Structural Antibody Database
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Structural Antibody Database
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SABIO-RK Wittig, Ulrike; Rey, Maja; Weidemann, Andreas; Kania, Renate; Müller, Wolfgang
No description supplied
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No description supplied
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SABIO-RK Ulrike Wittig
System for the Analysis of Biochemical Pathways Reaction Kinetics
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System for the Analysis of Biochemical Pathways Reaction Kinetics
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SASBDB Svergun, Dmitri; Valentini, Erica; Kikhney, Alexey; Previtali, Gianpietro; Jeffries, Cy
Small Angle Scattering Biological Data Bank
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Small Angle Scattering Biological Data Bank
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SATPdb Singh, Sandeep; Chaudhary, Kumardeep; Dhanda, Sandeep; Bhalla, Sherry; Usmani, Salman; Gautam, Ankur; Tuknait, Abhishek; Agrawal, Piyush; Mathur, Deepika; Raghava, Gajendra
A database of structurally annotated peptides
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A database of structurally annotated peptides
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SBASE Vlahovicek, K1, Kajan, L1, ÃÂ\x81goston, V2, Pongor, S1
Protein domain sequences and tools
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Protein domain sequences and tools
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SBCCDB Mann, Karen; Newberg, Justin; Mann, Michael; Jenkins, Nancy; Copeland, Neal
No description supplied
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No description supplied
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SBR-Blood Lichtenberg, Jens; Heuston, Elisabeth; Mishra, Tejaswini; Keller, Cheryl; Hardison, Ross; Bodine, David
Expression and epigenetic data for mouse hematopoietic cell types
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Expression and epigenetic data for mouse hematopoietic cell types
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sc-PDB Desaphy, Jérémy; Bret, Guillaume; Rognan, Didier; Kellenberger, Esther
Potential drug-binding sites in protein structures from the PDB
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Potential drug-binding sites in protein structures from the PDB
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SC2disease zhao, tianyi; Lyu, Shuxuan; Lu, Guilin; Juan, Liran; Zeng, Xi; hao, jianye; Peng, Jiajie; wei, zhongyu
Single cell transcriptomics data and disease
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Single cell transcriptomics data and disease
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SCAN Chen, Dongsheng; Deng, Yushan; Lu, Yubao; Li, Mengrou; Shen, Jiayi; Qin, Siying; Zhang, Wei; Zhang, Qiang; Shen, Zhaoyang; Li, Changxiao; Jia, Tengfei; Chen, Peixin; Peng, Lingmin; Chen, Yangfeng; Zhang, Wensheng; Liu, Hebin; Zhang, Liangming; Rong, Limin; Wang, Xiangdong
SCAN: Spatiotemporal Cloud Atlas for Neural cells
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SCAN: Spatiotemporal Cloud Atlas for Neural cells
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scAPAatlas Yang, Yang; Yang, Xiaoxiao; Tong, Yang; Liu, Gerui; Yuan, Jiapei
scRNAseq-based analysis of alternative polyadenylation across cells, tissues and species
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scRNAseq-based analysis of alternative polyadenylation across cells, tissues and species
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scAPAdb Wu, Xiaohui; Zhu, Sheng; Lian, Qiwei; Ye, Wenbin; Qin, Wei; Wu, Zhe; Ji, Guoli
scRNAseq-based analysis of alternative polyadenylation across cells, tissues and species
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scRNAseq-based analysis of alternative polyadenylation across cells, tissues and species
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SCAR Chen, Dongsheng; Deng, Yushan; Xiao, Jiedan; Chen, Peixin; Li, Mengrou; Shen, Jiayi; Jia, Tengfei; Li, Changxiao; Chang, Ashley; Zhang, Wensheng; Liu, Hebin; Xue, Ruidong; Zhang, Ning; Wang, Xiangdong; Huang, Li
SCAR: Single-cell and Spatially-resolved CAncer Resources
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SCAR: Single-cell and Spatially-resolved CAncer Resources
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scATAC-Ref Li, Chunquan; Qian, Feng-Cui; Zhou, Liwei; Zhu, Yanbing; Li, Yanyu; Yu, Zhengmin; Feng, Chenchen; Zhao, Yu3; Fang, Qiaoli; cai, fuhong; Wang, Qiuyu
scRef: a reference of scATAC-seq with known cell labels in multi-species
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scRef: a reference of scATAC-seq with known cell labels in multi-species
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scEnhancer Gao, Tianshun; Zheng, Zilong; Pan, Yihang; Zhu, Chengming; Wei, Fuxin; Yuan, Jinqiu; Sun, Rui; Fang, Shuo; Wang, Nan; Zhou, Yang; Qian, Jiang
Single-cell enhancer resource
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Single-cell enhancer resource
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ScerTF Aaron Spivak
Binding sites for Saccharomyces cerevisiae Transcription Factors
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Binding sites for Saccharomyces cerevisiae Transcription Factors
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scGRNbase Li, Chunquan; Huang, Xuemei; Song, Chao; Zhang, Guorui; Li, Ye; Zhao, Yu3; Zhang, Qinyi; Zhang, Yuexin2; Fan, Shifan; Zhao, Jun2
scGRNbase: a comprehensive single-cell gene regulatory network database of human and mouse
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scGRNbase: a comprehensive single-cell gene regulatory network database of human and mouse
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SchistoDB Zerlotini, A.1,2, Heiges, M.2, Wang, H.2, Moraes, R.L.V.1, Dominitini, A.J.1, Ruiz, J.C.1, Kissinger, J.C.2,3 Oliveira, G.1
Schistosoma mansoni genome resource
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Schistosoma mansoni genome resource
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SCMD - Saccharomyces cerevisiae Morphological Database Saito T.L.1,3, Nakatani Y.1,3, Sese J.1, Sano F.2,3, Yukawa M.2,3, Ohya Y.2,3 and Morishita S.1,3
Micrographs of budding yeast mutants
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Micrographs of budding yeast mutants
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scMethBank Bao, Yi-Ming; Wenting, Zong; Hongen, Kang; Xiong, Zhuang; Ma, Yingke; Jin, Tong; Gong, Zheng; Lizhi, Yi; Zhang, Mochen; Song, Wu; Guoliang, Wang; Li, Rujiao
Single Cell methylation data
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Single Cell methylation data
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SCOP2 - Structural Classification Of Proteins Antonina Andreeva, Dave Howorth, Cyrus Chothia, Eugene Kulesha and Alexey G. Murzin
Structural classification of proteins
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Structural classification of proteins
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SCOPe Fox, Naomi; Brenner, Steven; Chandonia, John-Marc
Sequences of domains of known structure, selected subsets, and sequence-structure correspondences
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Sequences of domains of known structure, selected subsets, and sequence-structure correspondences
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SCOPe Chandonia, John-Marc; Guan, Lindsey; Lin, Shiangyi; Yu, Changhua; Fox, Naomi; Brenner, Steven
SCOPe: Improvements to the Structural Classification of Proteins – extend
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SCOPe: Improvements to the Structural Classification of Proteins – extend
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SCOPPI Winter, C., Henschel, A., Kim W.K., Schroeder, M.
Structural classification of protein-protein interfaces
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Structural classification of protein-protein interfaces
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SCoV2-MD Selent, Jana; Torrens-Fontanals, Mariona; Peralta GarcÃa, Alejandro; Talarico, Carmine; Guixà -González, Ramon; Giorgino, Toni
Molecular dynamics of SARS-Cov-2 proteins and variant interpretation
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Molecular dynamics of SARS-Cov-2 proteins and variant interpretation
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SCovid Cheng, Liang; Qi, Changlu; Wang, Chao; Zhao, Lingling; Zhu, Zijun; Wang, Ping; Zhang, Sainan; Zhang, Xue1
Single cell transcriptomics of SARS-CoV-2 infection
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Single cell transcriptomics of SARS-CoV-2 infection
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scPlantDB Chen, Dijun; He, Zhaohui; Luo, Yuting; Zhou, Xinkai; Zhu, Tao; Lan, Yangming
scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases
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scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases
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SCPortalen Kasukawa, Takeya; Abugessaisa, Imad; Noguchi, Shuhei; Böttcher, Michael; Hasegawa, Akira; Kouno, Tsukasa; Kato, Sachi; Tada, Yuhki; Ura, Hiroki; Abe, Kuniya; Shin, Jay; Plessy, Charles; Carninci, Piero
Published single-cell datasets are rich resources for investigators who wan
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Published single-cell datasets are rich resources for investigators who wan
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scQTLbase Li, Lei; Ding, Ruofan; Wang, Qixuan; Gong, Lihai; Zhang, Ting; Zou, Xudong; Xiong, Kewei; Liao, Qi; Plass, Mireya
scQTLbase: an integrated human single-cell eQTL database
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scQTLbase: an integrated human single-cell eQTL database
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scTEA-db Gruber, Andreas; Barquin, Miguel; Kouzel, Ian; Ehrmann, Beat; Basler, Michael
scTEA-db: A comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes
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scTEA-db: A comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes
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SDAP Ivanciuc, O., Schein, C.H., Braun, W.
Sequences, structures, and IgE epitopes of allergenic proteins
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Sequences, structures, and IgE epitopes of allergenic proteins
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SEA Zhang, Yan; Wei, Yanjun; Zhang, Shumei; Shang, Shipeng; Zhang, Bin; Li, Song .; Wang, Xinyu; Wang, Fang `; Su, Jianzhong; Wu, Qion g; Liu, Hongbo
A database of super enhancers
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A database of super enhancers
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SEA version 3.0: a comprehensive extension and update of the Super-Enhancer archive Chen, Chuangeng;Zhou, Dianshuang;Gu, Yue;Wang, Cong;Zhang, Mengyan;Lin, Xiangyu;Xing, Jie;Wang, Hongli;Zhang, Yan
No description supplied
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No description supplied
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SEAweb: the small RNA Expression Atlas web application Rahman, Raza-Ur;Liebhoff, Anna-Maria;Bansal, Vikas;Fiosins, Maksims;Rajput, Ashish;Sattar, Abdul;Magruder, Daniel S;Madan, Sumit;Sun, Ting;Gautam, Abhivyakti;Heins, Sven;Liwinski, Timur;Bethune, Jörn;Trenkwalder, Claudia;Fluck, Juliane;Mollenhauer, Brit;Bonn, Stefan
No description supplied
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No description supplied
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SecReT4 Dexi Bi 1, Linmeng Liu 1, Cui Tai 1, Zixin Deng 1, Kumar Rajakumar 2, Hong-Yu Ou1
SecReT4: a web-based bacterial type IV secretion system resource
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SecReT4: a web-based bacterial type IV secretion system resource
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SEdb Wang, Yuezhu; Song, Chao; Zhao, Jun; Zhang, Yuexin; Zhao, Xilong; Feng, Chenchen; Zhang, Guorui; Zhu, Jiang6; Wang, Fan,; Qian, Feng-Cui; Zhou, Liwei; Zhang, Jian.,; Ai, Bo; Liu, Xinyu; Wang, Qiuyu; Li, Chunquan
SEdb 2.0: a comprehensive super-enhancer database of human and mouse
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SEdb 2.0: a comprehensive super-enhancer database of human and mouse
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SEdb: a comprehensive human super-enhancer database Jiang, Yong;Qian, Fengcui;Bai, Xuefeng;Liu, Yuejuan;Wang, Qiuyu;Ai, Bo;Han, Xiaole;Shi, Shanshan;Zhang, Jian;Li, Xuecang;Tang, Zhidong;Pan, Qi;Wang, Yuezhu;Wang, Fan;Li, Chunquan
No description supplied
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No description supplied
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SEECancer Li, Xia; Zhang, Hongyi; Luo, Shangyi; Zhang, Xinxin .; Liao, Jianlong; Quan, Fei; Zhao, Erjie; Zhou, Chenfen; Yu, Fulong; Zhang, Yunpeng; Xiao, Yun
No description supplied
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No description supplied
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Selectome Robinson-Rechavi, Marc; Moretti, Sebastien; Laurenczy, Balazs; Gharib, Walid; Castella, Briseis; Kuzniar, Arnold; Schabauer, Hannes; Studer, Romain; Valle, Mario; Salamin, Nicolas; Stockinger, Heinz
Gene trees that show positive selection
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Gene trees that show positive selection
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SelenoDB Romagné, Frédéric; Santesmasses, Didac; White, Louise; Sarangi, Gaurab; Mariotti, Marco; Hübler, Ron; Weihmann, Antje; Parra, Genis; Gladyshev, Vadim; Guigó, Roderic; Castellano, Sergi
A database of selenoprotein genes, proteins and SECIS elements
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A database of selenoprotein genes, proteins and SECIS elements
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SelTarbase Stefan M. Woerner, Yan P. Yuan, Axel Benner, Sebastian Korff, Magnus von Knebel Doeberitz, and Peer Bork
Mutations of human MSI-H tumor and colorectal cell lines
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Mutations of human MSI-H tumor and colorectal cell lines
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SEVA de Lorenzo, Victor; Martinez-Garcia, Esteban; Aparicio, Tomas; Goni, Angel; Fraile, Sofia
The Standard European Vector Architecture: a platform for analysis of complex prokaryotic phenotypes
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The Standard European Vector Architecture: a platform for analysis of complex prokaryotic phenotypes
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SEVA de Lorenzo, Victor; Martinez-Garcia, Esteban; Fraile, Sofia; Algar Parejo, Elena; Aparicio, Tomas; Velázquez Muñoz, Elena; Calles, Belen; TAS, HUSEYIN; Blázquez, Blas; Martin, Bruno; Prieto Hernández, Clara; Sánchez-Sampedro, Lucas; Nørholm, Morten; Volke
SEVA 4.0: an update of the Standard European Vector Architecture database f
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SEVA 4.0: an update of the Standard European Vector Architecture database f
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SEVENS Suwa, M.1, Sato, T.2, Okouchi, I.2, Arita, M.1, Matsumoto, S.3, Tsutsumi, S.3, Aburatani, H.3, Asai, K.1, Akiya, Y.1
7-transmembrane helix receptors
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7-transmembrane helix receptors
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SFLD Babbitt, Patricia; Akiva, Eyal; Brown, Shoshana; Almonacid, Daniel; Barber, Alan; Custer, Ashley; Hicks, Michael; Huang, Conrad; Lauck, Florian; Mashiyama, Susan; Meng, Elaine; Mischel, David; Morris, John; Schnoes, Alexandra; Stryke, Doug; Yunes, Jeffrey; Ferrin, Thomas; Holliday, Gemma
Structure-Function Linkage Database
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Structure-Function Linkage Database
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SGD Cherry, J. Michael; Skrzypek, Marek; Nash, Rob; Wong, Edith; MacPherson, Kevin; Hellerstedt, Sage; Engel, Stacia; Karra, Kalpana; Weng, Shuai; Sheppard, Travis; Binkley, Gail; Simison, Matt; Miyasato, Stuart
No description supplied
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No description supplied
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SGD - Saccharomyces Genome Database Costanzo MC, Engel SR, Wong ED, Lloyd P, Karra K, Chan ET, Weng S, Paskov KM, Roe GR, Binkley G, Hitz BC, Cherry JM.
Saccharomyces cerevisiae genes, gene products and their annotations.
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Saccharomyces cerevisiae genes, gene products and their annotations.
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Shanghai Rapeseed Database
Seed development and fatty acid metabolism of oilseed crops
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Seed development and fatty acid metabolism of oilseed crops
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SIB resources Mendes de Farias, Tarcisio; Zahn-Zabal, Monique; Bolleman, Jerven; Altenhoff, Adrian; Bairoch, Amos; Bansal, Parit; Baratin, Delphine; Bastian, Frederic; Bridge, Alan J; Burdet, Frederic; Crameri, Katrin; Dauvillier, Jerome; Dessimoz, Christophe; Gehant, Sebastien; Glover, Natasha; Gnodtke, Kristin; Hayes, Catherine; Ibberson, Mark; Kriventseva, Evgenia; Kuznetsov, Dmitry; Lisacek, Frederique; Mehl, Florence; Michel, Pierre-Andre; Moretti, Sebastien; Morgat, Anne; Oesterle, Sabine; Pagni, Marco; Redaschi, Nicole; Robinson-Rechavi, Marc; Samarasinghe, Kasun; Sima, Ana-Claudia; Szklarczyk, Damian; Topalov, Orlin; Toure, Vasundra; Unni, Deepak; Von Mering, Christian; Wollbrett, Julien; Zdobnov, Evgeny
The SIB Swiss Institute of Bioinformatics is a federation of bioinformatics
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The SIB Swiss Institute of Bioinformatics is a federation of bioinformatics
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SIDDBase Wang H., Kaloper M. and Benham C.J.
Stress-induced DNA duplex destabilization profiles of complete microbial genomes
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Stress-induced DNA duplex destabilization profiles of complete microbial genomes
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SIDER Bork, Peer; Kuhn, Michael; Letunic, Ivica; Jensen, Lars,
Side Effect Resource: adverse drug reactions
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Side Effect Resource: adverse drug reactions
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SigMol Kumar, Manoj; Rajput, Akanksha; Kaur, Karambir
Experimentally validated Quorum sensing signaling molecules (QSSMs) in prokaryotes
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Experimentally validated Quorum sensing signaling molecules (QSSMs) in prokaryotes
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SignaLink Csabai, Luca; Fazekas, Dávid; Kadlecsik, Tamás; Szalay-Bekő, Máté; Bohár, Balázs; Madgwick, Matthew; Módos, Dezső; Ölbei, Márton; Gul, Lejla; Sudhakar, Padhmanand; Kubisch, János; Oyeyemi, Oyebode James; Liska, Orsolya; Ari, Eszter; Hotzi, Bernadette; Billes, Viktor A.; Molnár, Eszter; Földvári-Nagy, László; Csályi, Kitti; Demeter, Amanda; Pápai, Nóra; Koltai, Mihály; Varga, Máté; Lenti, Katalin; Farkas, Illés J; Türei, Dénes; Csermely, Péter; Vellai, Tibor; Korcsmáros, Tamás
Tissue-specific signaling networks in model organisms
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Tissue-specific signaling networks in model organisms
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SIGNOR Cesareni, Gianni; Perfetto, Livia; Briganti, Leonardo; Calderone, Alberto; Cerquone Perpetuini, Andrea; Iannuccelli, Marta; Langone, Francesca; Licata, Luana; Marinkovic, Milica; Mattioni, Anna; Pavlidou, Theodora; Peluso, Daniele; Petrilli, Lucia; Pirrò, Stefano; Posca, Daniela; Santonico, Elena; Silvestri, Alessandra; Spada, Filomena; Castagnoli, Luisa
SIGnaling Network Open Resource
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SIGnaling Network Open Resource
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SIGNOR Perfetto, Livia; Lo Surdo, Prisca; Iannuccelli, Marta; Licata, Luana; Contino, Silvia; Castagnoli, Luisa; Cesareni, Gianni
SIGNOR 3.0, the SIGnaling Network Open Resource 3.0: 2022 update
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SIGNOR 3.0, the SIGnaling Network Open Resource 3.0: 2022 update
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SilencerDB Jiang, Rui; Zeng, Wanwen; Chen, Shengquan; Cui, Xuejian; Chen, Xiaoyang; Gao, Zijing
Human silencers, validated or predicted
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Human silencers, validated or predicted
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SilkMeta Dai, Fangyin; Lu, Kunpeng; Pan, Yifei; Shen, Jianghong; Yang, Lin; Zhan, Chengyu; Liang, Shubo; Tai, Shuaishuai; Wan, Linrong; LI, Tian.; Cheng, Tingcai; Ma, Bi; Pan, Guoqing; He, Ningjia; Lu, Cheng; Westhof, Eric; Xiang, Zhonghuai; Han, Min-Jin; Tong, Xiaoling
SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data
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SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data
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SilkSatDb Prasad, M.D.1, Muthulakshmi, M.1, Arunkumar, K.P.1, Madhu, M.1, Sreenu, V.B.2, Pavithra, V.2, Bose, B.2, Nagarajaram, H.A.2, Mita, K.3, Shimada, T.4 and Nagaraju, J.1
A microsatellite database of the silkworm Bombyx mori
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A microsatellite database of the silkworm Bombyx mori
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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data Yilmaz, Pelin; Wegener Parfrey, Laura; Yarza, Pablo; Gerken, Jan; Prüsse, Elmar; Quast, Christian; Schweer, Timmy; Peplies, Jörg; Ludwig, Wolfgang; Glöckner, Frank Oliver
The SILVA (from Latin silva, forest) databases provides comprehensive, quality checked and regularly updated databases of aligned small- (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya). All sequences are checked for anomalies, carry a rich set of sequence associated contextual information, have multiple taxonomic classifications, and the latest validly described nomenclature.
database summary
The SILVA (from Latin silva, forest) databases provides comprehensive, quality checked and regularly updated databases of aligned small- (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya). All sequences are checked for anomalies, carry a rich set of sequence associated contextual information, have multiple taxonomic classifications, and the latest validly described nomenclature.
database summary
SIMAP Rattei, Thomas; Arnold, Roland,; Goldenberg, Florian; Mewes, Hans-Werner
Pre-calculated protein sequence similarities, domains, annotations and clusters
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Pre-calculated protein sequence similarities, domains, annotations and clusters
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SingPro Han, Lianyi; LIAN, Xichen; ZHANG, Yintao; ZHOU, Ying; Sun, Xiuna; HUANG, Shijie; Zhu, Feng
SCPRDB: a knowledge base providing single-cell proteomic data
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SCPRDB: a knowledge base providing single-cell proteomic data
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siRNAdb Warfinge R.E., Chalk A.M. and Sonnhammer E.L.L.
Functional human siRNA sequences
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Functional human siRNA sequences
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SISYPHUS Andreeva A.1, Prlic A.2, Hubbard T.J.P.2 and Murzin A.G.1
Structural alignments for proteins with non-trivial relationships
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Structural alignments for proteins with non-trivial relationships
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SLKB Li, Lang; Gökbağ, Birkan; Tang, Shan; Fan, Kunjie; Cheng, Lijun; Yu, Lianbo; Zhao, Yue
SLKB: Synthetic lethality knowledge base
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SLKB: Synthetic lethality knowledge base
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SMART Bork, Peer; Letunic, Ivica; Khedkar, Supriya
Simple modular architecture research tool: signalling, extracellular and chromatin-associated protein domains
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Simple modular architecture research tool: signalling, extracellular and chromatin-associated protein domains
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SMART Bork, Peer; Letunic, Ivica
SMART (Simple Modular Architecture Research Tool) is a web resource (http:/
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SMART (Simple Modular Architecture Research Tool) is a web resource (http:/
database summary
SMMRNA Parkesh, Raman; Mehta, Ankita; Sonam, Surabhi; Gouri, Isha; Loharch, Saurabh; Sharma, Deepak K
Small molecule inhibitors of RNA
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Small molecule inhibitors of RNA
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SMoS.2: Update of database of Structural Motifs in Superfamilies Anita Rachel Chacko, Oommen K. Mathew, Adwait Joshi, Upadhyayula Surya Raghavender and R. Sowdhamini
Open Data Drug & Drug Target Database
database summary
Open Data Drug & Drug Target Database
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SMPDB Wishart, David; Jewison, Tim; Su, Yilu; Miri Disfany, Fatemeh; Liang, Jack; Knox, Craig; Maciejewski, Adam; Poelzer, Jenna; Huynh, Jessica; Zhu, You; Arndt, David; Djoumbou, Yannick; Liu, Yifeng; Deng, Lu; Guo, An Chi; Han, Beomsoo; Pon, Allison; Wilson, Michael.; Rafatnia, Shahrzad; Liu, Philip
Small Molecule Pathway Database
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Small Molecule Pathway Database
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SNAPPI Jefferson E.R., Walsh T., Roberts T. and Barton, G.J.
Structures, iNterfaces and Alignments for Protein-Protein Interactions
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Structures, iNterfaces and Alignments for Protein-Protein Interactions
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Sno/scaRNAbase Xie J.1, Zhang M.2, Zhou T.1, Hua X.1, Tang L.S.1 and Wu W.L.3
Small nucleolar RNAs and cajal body-specific RNAs
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Small nucleolar RNAs and cajal body-specific RNAs
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snoDB Scott, Michelle; Bergeron, Danny; Paraqindes, Hermes; Fafard-Couture, Etienne; Deschamps-Francoeur, Gabrielle; Faucher Giguere, Laurence; Bouchard-Bourelle, Philia; Abou Elela, Sherif; Catez, Frédéric; Marcel, Virginie
snoDB 2.0: An enhanced interactive database, specializing in human snoRNAs
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snoDB 2.0: An enhanced interactive database, specializing in human snoRNAs
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snoDB: an interactive database of human snoRNA sequences, abundance and interactions Bouchard-Bourelle, Philia;Desjardins-Henri, Clément;Mathurin-St-Pierre, Darren;Deschamps-Francoeur, Gabrielle;Fafard-Couture, Étienne;Garant, Jean-Michel;Elela, Sherif Abou;Scott, Michelle S
No description supplied
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No description supplied
database summary
snoRNA-LBME-db Lestrade L.1 and Weber M.J.2
Human snoRNAs and Cajal body-specific RNAs (scaRNAs)
database summary
Human snoRNAs and Cajal body-specific RNAs (scaRNAs)
database summary
SNP-Seek Alexandrov, Nickolai; Mansueto, Locedie; Palis, Kevin; Fuentes, Roven; Ulat, Victor; Chebotarov, Dmytro; Tai, Shuaishuai; Zhang, Gengyun; Li, Zhikang; Mauleon, Ramil; Hamilton, Ruaraidh; McNally, Kenneth
Rice SNPs from 3,000 rice genomes
database summary
Rice SNPs from 3,000 rice genomes
database summary
SNP2APA: a database for evaluating effects of genetic variants on alternative polyadenylation in human cancers Yang, Yanbo;Zhang, Qiong;Miao, Ya-Ru;Yang, Jiajun;Yang, Wenqian;Yu, Fangda;Wang, Dongyang;Guo, An-Yuan;Gong, Jing
No description supplied
database summary
No description supplied
database summary
SNP2TFBS Bucher, Philipp; Ambrosini, Giovanna; Kumar, Sunil
Regulatory SNPs affecting predicted transcription factor binding sites
database summary
Regulatory SNPs affecting predicted transcription factor binding sites
database summary
SNPeffect De Baets, Greet1,2,3; Van Durme, Joost1,2,3; Reumers, Joke4,5; Maurer-Stroh, Sebastian6; Vanhee, Peter1,3; Dopazo, Joaquin7,8; Schymkowitz, Joost1,2 and Rousseau, Frederic1,2
Phenotypic effects of human coding SNPs
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Phenotypic effects of human coding SNPs
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SNPlogic
Interactive SNP annotation, selection and prioritization system for genotyping projects and/or analysis and interpretation of SNP data.
database summary
Interactive SNP annotation, selection and prioritization system for genotyping projects and/or analysis and interpretation of SNP data.
database summary
SolGenomics Fernandez-Pozo, Noe; Menda, Naama; Edwards, Jeremy D.; Saha, Surya,; Tecle, Isaak; Strickler, Susan; Bombarely, Aureliano; York, Thomas; Pujar, Anuradha; Foerster, Hartmut; Yan, Aimin; Mueller, Lukas
Solanaceae Genomics Network
database summary
Solanaceae Genomics Network
database summary
SomaMutDB Sun, Shixiang; Wang, Yujue; Maslov, Alexander; Dong, Xiao; Vijg, Jan
Somatic mutations in normal human tissues
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Somatic mutations in normal human tissues
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SORC Xu, Juan; Zhou, Weiwei; Su, Minghai; Jiang, Tiantongfei; Yang, Qingyi; Sun, Qisen; Xu, Kang1; Shi, Jingyi; Yang, Changbo; Ding, Na; Li, Yongsheng
SORC: An Integrated Spatial Omics Resource in Cancer
database summary
SORC: An Integrated Spatial Omics Resource in Cancer
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sORFs Olexiouk, Volodimir; Menschaert, Gerben; Crappé, Jeroen; Verbruggen, Steven
Small ORFs identified by ribosome profiling
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Small ORFs identified by ribosome profiling
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sORFs.org Olexiouk, Volodimir; Van Criekinge, Wim; Menschaert, Gerben
No description supplied
database summary
No description supplied
database summary
SOURCE Diehn, M.1, Sherlock, G.2, Binkley, G.2, Jin, H.2, Hernandez-Boussard, T.2, Cherry, J.M.2, Brown, P.O.3, Alizadeh, A.A.4
Functional genomic resource for annotations, ontologies, and expression data
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Functional genomic resource for annotations, ontologies, and expression data
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SoyBase Nelson, Rex; Brown, Anne; Conners, Shawn; Huang, Wei; Wilkey, Andrew; Grant, David; Weeks, Nathan; Cannon, Steven; Graham, Michelle
Soybean genetics and genomics
database summary
Soybean genetics and genomics
database summary
SoyKB - Soybean Knowledge Base Joshi, T.1,2,3,4, Fitzpatrick, M.R.1,2, Chen, S.1,2, Liu, Y.2,4, Zhang, H.1,2, Endacott, R.Z.1,2, Gaudiello, E.C.1,2, Stacey, G.2,3,5, Nguyen, H.T.2,3,5, Xu, D.1,2,3,4
Soybean Knowledge Base
database summary
Soybean Knowledge Base
database summary
SoyMD Fang, Chao; Yang, Zhiquan; Luo, Chengfang; Pei, Xinxin; Wang, Shengbo; Huang, Yiming; Li, Jiawei; Liu, Baohui; Kong, Fanjiang; Yang, Qing-Yong
SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding
database summary
SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding
database summary
SoyNet Kim, Eiru; Hwang, Sohyun; Lee, Insuk
Co-functional networks for soy bean, Glycine max
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Co-functional networks for soy bean, Glycine max
database summary
SPASCER Fan, Zhiwei; Luo, Yangyang; Lu, Huifen; Wang, Tiangang; Feng, Yuzhou; Zhao, Weiling; Kim, Pora; Zhou, Xiaobo1
Spatial transcriptomics annotation at single-cell resolution
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Spatial transcriptomics annotation at single-cell resolution
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SpatialDB: a database for spatially resolved transcriptomes Fan, Zhen;Chen, Runsheng;Chen, Xiaowei
Spatially resolved transcriptomic techniques allow the characterization of
database summary
Spatially resolved transcriptomic techniques allow the characterization of
database summary
SPDB Wang, Guohua; Wang, Fang; Liu, Chunpu; Li, Jiawei; Yang, Fan; Song, Jiangning; Yao, Jianhua
SPDB: a comprehensive resource and knowledgebase for proteomic data at the single-cell resolution
database summary
SPDB: a comprehensive resource and knowledgebase for proteomic data at the single-cell resolution
database summary
SPEED Chen, Yangfeng; Zhang, Xingliang; Peng, Xi; Jin, Yicheng; Ding, Peiwen; Xiao, Jiedan; Li, Changxiao; Chang, Ashley; Yue, Qizhen; Pu, Mingyi; Chen, Peixin; Shen, Jiayi; Li, Mengrou; Jia, Tengfei; Wang, Haoyu; Huang, Li; Guo, Guoji; Zhang, Wensheng .; Liu,
Single-cell pan-species atlas
database summary
Single-cell pan-species atlas
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SPENCER Xie, Yubin; Luo, Xiaotong; Huang, Yuantai; Li, Huiqin; Luo, Yihai; Zuo, Zhixiang; Ren, Jian.
Cancer-associated ncRNA-encoded small peptides
database summary
Cancer-associated ncRNA-encoded small peptides
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SPICA Carmona, Santiago; Andreatta, Massimo; David, Fabrice; Iseli, Christian; Guex, Nicolas
Swiss Portal for Immune Cell Analysis
database summary
Swiss Portal for Immune Cell Analysis
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SPIKE Arnon Paz, Zippora Brownstein, Yaara Ber, Shani Bialik, Eyal David, Dorit Sagir, Igor Ulitsky, Ran Elkon, Adi Kimchi, Karen B. Avraham, Yosef Shiloh, and Ron Shamir
Signaling Pathways Integrated Knowledge Engine
database summary
Signaling Pathways Integrated Knowledge Engine
database summary
SPIRE Schmidt, Thomas S; Fullam, Anthony; Ferretti, Pamela; Orakov, Askarbek; Maistrenko, Oleksandr; Ruscheweyh, Hans; Duan, Yiqian; Van Rossum, Thea; Sunagawa, Shinichi; Mende, Daniel R; Coelho, Luis Pedro; Bork, Peer
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
database summary
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
database summary
SporeWeb Eijlander, Robyn; de Jong, Anne; Krawczyk, Antonina; Holsappel, Siger; Kuipers, Oscar
Regulatory pathways during the sporulation cycle of Bacillus subtilis
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Regulatory pathways during the sporulation cycle of Bacillus subtilis
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SRA Katz, Ken; Shutov, Oleg; Lapoint, Richard; Kimelman, Michael; Brister, J.; Christopher, O'Sullivan
Sequence Read Archive
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Sequence Read Archive
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sRNATarBase Jiang Wang1, Tao Liu1, Bo Zhao1, Qixuan Lu1, Zheng Wang1, Yuan Cao2, Wuju Li1
Bacterial sRNAs are a class of small regulatory RNAs of about 40 – 5
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Bacterial sRNAs are a class of small regulatory RNAs of about 40 – 5
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SRPDB Alm Rosenblad, M.1, Zwieb, C.2, Samuelsson, T.1
Signal recognition particle RNA, SRP protein, and SRP receptor sequences and alignments
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Signal recognition particle RNA, SRP protein, and SRP receptor sequences and alignments
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SSRome Morad M. Mokhtar and Mohamed A. M. Atia
SSRome is a fully functional, comprehensive, integrated database and pipeli
database summary
SSRome is a fully functional, comprehensive, integrated database and pipeli
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SSRome: an integrated database and pipelines for exploring microsatellites in all organisms Mokhtar, Morad M;Atia, Mohamed A M
No description supplied
database summary
No description supplied
database summary
SSToSS - Sequence-Structural Templates of Single-member Superfamilies Chakrabarti, S.1, Manohari, G.2 and R. Sowdhamini1
Signal recognition particle RNA, SRP protein, and SRP receptor sequences and alignments
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Signal recognition particle RNA, SRP protein, and SRP receptor sequences and alignments
database summary
STAB Liting Song, Shaojun Pan, Zichao Zhang, Longhao Jia, Wei-Hua Chen, and Xing-Ming Zhao
Spatio-Temporal Cell Atlas of the Human Brain
database summary
Spatio-Temporal Cell Atlas of the Human Brain
database summary
STAB Zhao, Xing-Ming; Yang, Yucheng T.; Gan, ziquan; Zhang, Jinglong; Zhao, Xingzhong; Yang, Yifan; Han, Shuwen; Wu, Wei
STAB2: an updated Spatio-Temporal cell Atlas of the human and mouse Brain
database summary
STAB2: an updated Spatio-Temporal cell Atlas of the human and mouse Brain
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StarBASE Li, Jun-Hao; Liu, Shun; Zhou, Hui`'; Qu, Liang-Hu; Yang, Jian-Hua
microRNA-mRNA interaction maps
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microRNA-mRNA interaction maps
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Start2Fold Vranken, Wim; Pancsa, Rita; Varadi, Mihaly; Tompa, Peter
Hydrogen/deuterium exchange data on protein folding and stability
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Hydrogen/deuterium exchange data on protein folding and stability
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STCDB - Signal Transduction Classification Database Ming Chen, Susana Lin, Ralf Hofestaedt
Signal transductions classification
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Signal transductions classification
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STCRDab Deane, Charlotte; Leem, Jinwoo; de Oliveira, Saulo; Krawczyk, Konrad
No description supplied
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No description supplied
database summary
Stem Cell Discovery Engine Winston Hide
Comparison system for cancer stem cell analysis
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Comparison system for cancer stem cell analysis
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StemDriver Zhou, Xiaobo1; Guo, Jingjing; Liu, Yang; Kim, Pora; Luo, Yangyang; Wen, Jianguo; Zhao, Weiling; Huang, Kexin
StemDriver:a knowledgebase of gene functions for hematopoietic stem cell fate determination
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StemDriver:a knowledgebase of gene functions for hematopoietic stem cell fate determination
database summary
STEMFORMATICS Choi, Jarny; Pacheco, Chris M; Mosbergen, Rowland; Korn, Othmar; Chen, Tyrone; Nagpal, Isha; Englart, Steve; Angel, Paul W; Wells, Christine A;
Stemformatics is an established gene expression data portal containing over
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Stemformatics is an established gene expression data portal containing over
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StemMapper Pinto, José; Machado, Rui; Magno, Ramiro; Oliveira, Daniel; Machado, Susana; Andrade, Raquel; Bragança, José; Duarte, Isabel; Futschik, Matthias
No description supplied
database summary
No description supplied
database summary
STIFDB2 Mahantesha Naika1,2, Khader Shameer2,3, Oommen K. Mathew2, Ramanjini Gowda1 and R. Sowdhamini 2*
STIFDB2: Stress responsive TrancrIption Factor DataBase version 2
database summary
STIFDB2: Stress responsive TrancrIption Factor DataBase version 2
database summary
STITCH Kuhn, Michael; Szklarczyk, Damian; Pletscher-Frankild, Sune; Blicher, Thomas; von Mering, Christian; Jensen, Lars,; Bork, Peer
Search Tool for Interactions of Chemicals
database summary
Search Tool for Interactions of Chemicals
database summary
STOmicsDB Ma, Kailong; Xu, Zhicheng; Wang, Weiwen; Yang, Tao; Chen, Jing; Huang, Yan; Gould, Joshua; Du, Wensi; Yang, Fan7; Li, Ling; Hua, cong; Hu, shoujie; Cai, jia; You, lijin; Zeng, wenjun; Wang, bo; Liu, Longqi; Xu, Xun; Chen, Fengzhen; Wei, Xiaofeng; Ma, xizheng; Wang, jieyu; Lu, huifang; li, zhiyong; hu, qingjiang; liu, yiqun; Zhang, Yong13; Li, Yuxiang; Chen, Ao
STOmicsDB: a database of Spatial Transcriptomic data
database summary
STOmicsDB: a database of Spatial Transcriptomic data
database summary
StrainInfo.net Bioportal
Virtual catalogue providing integrated downstream information on microorganisms deposited within a global network of biological resource centers.
database summary
Virtual catalogue providing integrated downstream information on microorganisms deposited within a global network of biological resource centers.
database summary
StreptomeDB Günther, Stefan; Moumbock, Aurélien A. F.; Gao, Mingjie; Qaseem, Ammar; Li, Jianyu; Kirchner, Pascal A.; Ndingkokhar, Bakoh; Bekono, Boris D.; Simoben, Conrad V.; Babiaka, Smith B.; Malange, Yvette I.; Sauter, Florian; Zierep, Paul; Ntie-Kang, Fidele
No description supplied
database summary
No description supplied
database summary
Strepto_DB
Database for comparative genome analysis of 15 strains of the genus Streptococcus
database summary
Database for comparative genome analysis of 15 strains of the genus Streptococcus
database summary
STRING Szklarczyk, Damian; Kirsch, Rebecca; Koutrouli, Mikaela; Nastou, Katerina; Mehryary, Farrokh; Hachilif, Radja; Gable, Annika; FANG, TAO; Doncheva, Nadezhda; Pyysalo, Sampo`; Bork, Peer; Jensen, Lars,; von Mering, Christian
The STRING database in 2023: protein–protein association networks and fun
database summary
The STRING database in 2023: protein–protein association networks and fun
database summary
STRING von Mering, Christian; Szklarczyk, Damian; Gable, Annika; Nastou, Katerina; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo`; Doncheva, Nadezhda; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars
Predicted functional associations between proteins
database summary
Predicted functional associations between proteins
database summary
SUBA Heazlewood, J.L., Verboom, R.E., Tonti-Filippini, J., Small, I. and Millar, A.H.
Subcellular localisation of Arabidopsis proteins
database summary
Subcellular localisation of Arabidopsis proteins
database summary
SubtiWiki Stülke, Jörg; Pedreira, Tiago; Elfmann, Christoph
The current state of SubtiWiki, the database for the model organism Bacillu
database summary
The current state of SubtiWiki, the database for the model organism Bacillu
database summary
SubtiWiki Stülke, Jörg; Michna, Raphael; Commichau, Fabian; Tödter, Dominik; Zschiedrich, Christopher
Collaborative resource for the Bacillus community
database summary
Collaborative resource for the Bacillus community
database summary
SugarBindDB Lisacek, Frederique; Packer, Nicolle; Mariethoz, Julien; Campbell, Matthew Peter; Karlsson, Niclas; Alocci, Davide; Khatib, Khaled; Mullen, Elaine
Host-pathogen interactions mediated by glycans
database summary
Host-pathogen interactions mediated by glycans
database summary
SulfAtlas MICHEL, Gurvan; Stam, Mark; Lelièvre, Pernelle; Hoebeke, Mark; Corre, Erwan; Barbeyron, Tristan
Sulfatase families
database summary
Sulfatase families
database summary
SUMMER Wang, Meilin; Xin, Junyi; Chen, Silu; Ben, Shuai; Li, Huiqin; Zhang, Zhengdong; Du, Mulong
Biomarkers, GWAS and cancer survival
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Biomarkers, GWAS and cancer survival
database summary
SuperCAT
A database for multilocus sequence typing analysis of the Bacillus cereus group of bacteria
database summary
A database for multilocus sequence typing analysis of the Bacillus cereus group of bacteria
database summary
SuperCYP Saskia Preissner, Katharina Kroll, Mathias Dunkel, Christian Senger, Gady Goldsobel, Daniel Kuzman, Stefan Guenther, Rainer Winnenburg, Michael Schroeder, and Robert Preissner
Cytochrome P450 alleles and drug interactions
database summary
Cytochrome P450 alleles and drug interactions
database summary
SuperDrug Goede, A.1, Dunkel, M.1, Mester, N.1, Preissner, R.1
A conformational drug database
database summary
A conformational drug database
database summary
SuperDrug2 Preissner, Robert; Siramshetty, Vishal; Eckert, Andreas; Gohlke, Björn; Goede, Andrean; Chen, Qiaofeng; Devarakonda, Prashanth; Preissner, Saskia
No description supplied
database summary
No description supplied
database summary
SUPERFAMILY Oates, Matt; Stahlhacke, Jonathan; Vavoulis, Dimitrios; Smithers, Ben; Rackham, Owen; Sardar, Adam; Zaucha, Jan; Thurlby, Natalie; Fang, Hai; Gough, Julian
Assignments of proteins to structural superfamilies
database summary
Assignments of proteins to structural superfamilies
database summary
SuperFly Jaeger, Johannes; Cicin-Sain, Damjan; Hermoso, Antonio; Crombach, Anton; Wotton, Karl; Jiménez-Guri, Eva; Taly, Jean-François; Roma, Guglielmo
spatio-temporal gene expression patterns indipteran embryos
database summary
spatio-temporal gene expression patterns indipteran embryos
database summary
SuperHapten Guenther S., Hempel D., Dunkel M., Rother K. and Preissner R.
A comprehensive database for small immunogenic compounds
database summary
A comprehensive database for small immunogenic compounds
database summary
SuperNatural Dunkel, Mathias; Banerjee, Priyanka; Erehman, Jevgeni; Gohlke, Björn; Wilhelm, Thomas; Preissner, Robert
Natural compounds and their suppliers
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Natural compounds and their suppliers
database summary
SuperNatural Gallo, Kathleen; Kemmler, Emanuel; Goede, Andrean; Becker, Finnja; Dunkel, Mathias; Preissner, Robert; Banerjee, Priyanka
SuperNatural 3.0 - a database of natural products
database summary
SuperNatural 3.0 - a database of natural products
database summary
SuperPain Preissner, Saskia; Gohlke, Björn; Preissner, Robert
No description supplied
database summary
No description supplied
database summary
SuperSweet Jessica Ahmed 1, Saskia Preissner 1, Mathias Dunkel 1, Catherine L. Worth 1,Andreas Eckert 1 and Robert Preissner 1
Natural and artificial sweetening agents
database summary
Natural and artificial sweetening agents
database summary
SuperTarget Hecker, Nikolai; Ahmed, Jessica; von Eichborn, Joachim; Dunkel, Mathias; Macha, Karel; Eckert, Andreas; Bourne, Phil; Gilson, Michael; Preissner, Robert
Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontology terms of the target proteins
database summary
Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontology terms of the target proteins
database summary
SUPFAM Mudgal, R., Krishnadev, O., and Srinivasan, N.
This database elucidates the remote relationships found between Pfam families and structural families (SCOP) and uses the evolutionary information inherent of SCOP classification to identify related Pfam familiesRemote relationships between Pfam families.
database summary
This database elucidates the remote relationships found between Pfam families and structural families (SCOP) and uses the evolutionary information inherent of SCOP classification to identify related Pfam familiesRemote relationships between Pfam families.
database summary
SureChEMBL Hersey, Anne; Papadatos, George; Davies, Mark; Dedman, Nathan; Chambers, Jon; Gaulton, Anna; Siddle, James; Koks, Richard; Irvine, Sean; Pettersson, Joe; Goncharoff, Nicko; Overington, John
Chemical compounds extracted from patent documents
database summary
Chemical compounds extracted from patent documents
database summary
SWEET-DB Loß, Alex1, Bunsmann. P.1, Bohne, A.4, Loß, Annika1, Schwarzer, E.1, Lang, E.3, von der Lieth, C.-W.4
Annotated carbohydrate structure and substance information
database summary
Annotated carbohydrate structure and substance information
database summary
SWISS-2DPAGE Hoogland C.
Annotated two-dimensional polyacrylamide gel electrophoresis database
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Annotated two-dimensional polyacrylamide gel electrophoresis database
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SwissBioisostere Vincent Zoete
A database of molecular replacements for ligand design
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A database of molecular replacements for ligand design
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SwissBioisostere Zoete, Vincent; Cuozzo, Alessandro; Daina, Antoine; Perez, Marta; Michielin, Olivier
SwissBioisostere 2021: updated structural, bioactivity and physicochemical
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SwissBioisostere 2021: updated structural, bioactivity and physicochemical
database summary
SwissRegulon Pachkov M., Erb I., Molina N. and van Nimwegen E.
Genome-wide annotations of regulatory sites in the intergenic regions
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Genome-wide annotations of regulatory sites in the intergenic regions
database summary
SYNBIP Xue, Weiwei; WANG, Xiaona; Li, Fengcheng; QIU, Wenqi; XU, Binbin; LI, Yanlin; LIAN, Xichen; YU, Hongyan; ZHANG, Zhao; WANG, Jianxin; LI, Zhaorong; Zhu, Feng
Synthetic binding proteins
database summary
Synthetic binding proteins
database summary
SynDB W. Zhang1, Y. Zhang1, H. Zheng2, C. Zhang3, W. Xiong 2,J.G. Olyarchuk 1, M. Walker 4, W. Xu 5, M. Zhao 1, S. Zhao 1 , Z. Zhou 2 and L. Wei1
Proteins involved in synaptic activity
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Proteins involved in synaptic activity
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SyntDB: defining orthologues of human long noncoding RNAs across primates Bryzghalov, Oleksii;Szcześniak, Michał Wojciech;Makałowska, Izabela
No description supplied
database summary
No description supplied
database summary
Synthetic Gene Database Wu G., Zheng Y., Qureshi I., Zin H., Beck T., Bulka B. and Freeland S.J.
Synthetic genes described in peer-reviewed literature
database summary
Synthetic genes described in peer-reviewed literature
database summary
Sys-BodyFluid Su-Jun Li, Mao Peng, Hong Li, Bo-Shu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li and Rong Zeng
Sys-BodyFluid is a body fluid proteome database for 11 fluids.
database summary
Sys-BodyFluid is a body fluid proteome database for 11 fluids.
database summary
SysteMHC Atlas Caron, Etienne; Shao, Wenguang; Pedrioli, Patrick; Wolski, Witold; Scurtescu, Cristian; Schmid, Emanuel; Vizcaino, Juan Antonio; Courcelles, Mathieu; Schuster, Heiko; Kowalewski, Daniel; Marino, Fabio; Arlehamn, Cecilia; Vaughan, Kerrie; Sette, Alessandro; Peters, Bjoern,; Ottenhoff, Tom; Meijgaarden, Krista; Nieuwenhuizen, Natalie; Kaufmann, Stefan; Schlapbach, Ralph; Castle, John; Nesvizhskii, Alexey; Nielsen, Morten; Deutsch, Erik; Campbell, David; Moritz, Robert; Zubarev, Roman; Ytterberg, Jimmy; Purcell, Anthony; Marcilla, Miguel; Paradela, Alberto; Wang, Qi; Costello, Catherine; Ternette, Nicola; van Veelen, Peter; Heck, Albert; van Els, Cécile; de Souza, Gustavo A; Sollid, Ludvig; Admon, Arie; Stevanovic, Stefan; Rammensee, Hans-Georg; Thibault, Pierre; Perreault, Claude; Bassani-Sternberg, Michal; Aebersold, Ruedi
Mass spectrometry (MS)-based immunopeptidomics investigates the repertoire
database summary
Mass spectrometry (MS)-based immunopeptidomics investigates the repertoire
database summary
SysteMHC Atlas Shao, Wenguang (proxy) (contact); Huang, Xiaoxiang; Gan, Ziao; Cui, Haowei; Lan, Tian; Liu, Yansheng; Caron, Etienne
The SysteMHC Atlas v2.0, an updated resource for mass spectrometry-based immunopeptidomics
database summary
The SysteMHC Atlas v2.0, an updated resource for mass spectrometry-based immunopeptidomics
database summary
SYSTERS Krause, A.1, Haas, S.A.1, Coward, E.2, Vingron, M.1
Integrated database of protein families, EST clusters and their genomic positions
database summary
Integrated database of protein families, EST clusters and their genomic positions
database summary
SYSTOMONAS Choi C.1, MÜnch R.1, Leupold S.1, Klein J.1, Siegel I.1, Thielen B.2, Benkert B.1, Kucklick M.1, Schobert M.1, Barthelmes J.2, Ebeling C.2, Haddad I.1, Scheer M.1,4, Grote A.3, Hiller K.1, Boyke B.1, Schreiber K.1, Retter I.1, Schomburg D.1 and Jahn D.1
SYSTems biology of pseudOMONAS
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SYSTems biology of pseudOMONAS
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SZGR Zhao, Zhongming; Jia, Peilin; Han, Guangchun; Zhao, Junfei; Lu, Pinyi
SchiZophrenia Gene Resource
database summary
SchiZophrenia Gene Resource
database summary
T-cell COVID-19 Atlas Nersisyan, Stepan; Zhiyanov, Anton; Shkurnikov, Maxim; Tonevitsky, Alexander
Predicted affinities between SARS-CoV-2 peptides and HLA alleles
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Predicted affinities between SARS-CoV-2 peptides and HLA alleles
database summary
T-psi-C: user friendly database of tRNA sequences and structures Sajek, Marcin Piotr;Woźniak, Tomasz;Sprinzl, Mathias;Jaruzelska, Jadwiga;Barciszewski, Jan
tRNAs have been widely studied for their role as genetic code decoders in t
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tRNAs have been widely studied for their role as genetic code decoders in t
database summary
T2D portal
This portal provides access to comprehensive results from 28 large human ge
database summary
This portal provides access to comprehensive results from 28 large human ge
database summary
T3DB Wishart, David; Arndt, David; Pon, Allison; Sajed, Tanvir; Guo, An Chi; Djoumbou, Yannick; Knox, Craig; Wilson, Michael ,; Liang, Jack; Grant, Jason; Liu, Yifeng; Goldansaz, Seyed; Rappaport, Stephen
Toxin and Toxin-Target Database
database summary
Toxin and Toxin-Target Database
database summary
Tabloid Proteome Martens, Lennart; Gupta, Surya; Turan, Demet; Tavernier, Jan
No description supplied
database summary
No description supplied
database summary
TADB Ou, Hong-Yu; Xie, Yingzhou; WEI, Yiqing; Shen, Yue; Li, Xiaobin; Zhou, Hao; Tai, Cui; Deng, Zixin
No description supplied
database summary
No description supplied
database summary
TADB Yucheng Shao 1, Ewan M. Harrison 2, Dexi Bi1, Cui Tai 1, Xinyi He 1, Hong-Yu Ou 1, Kumar Rajakumar 2,3 and Zixin Deng 1
Type II Toxin-Antitoxin loci in bacteria and archaea
database summary
Type II Toxin-Antitoxin loci in bacteria and archaea
database summary
TADB OU, Hong-Yu; Guan, Jiahao; Chen, Yongkui; Goh, Ying-Xian; Wang, Meng; Tai, Cui; Deng, Zixin1; Song, Jiangning
TADB 3.0: an updated database of bacterial toxin-antitoxin loci and associated mobile genetic elements
database summary
TADB 3.0: an updated database of bacterial toxin-antitoxin loci and associated mobile genetic elements
database summary
TAED - The Adaptive Evolution Database
A phylogeny-based tool for comparative genomics
database summary
A phylogeny-based tool for comparative genomics
database summary
TarBase Hatzigeorgiou, Artemis; Karagkouni, Dimitra; Paraskevopoulou, Maria; Chatzopoulos, Serafeim; Vlachos, Ioannis; Tastsoglou, Spyros; Kanellos, Ilias; Papadimitriou, Dimitris; Kavakiotis, Ioannis; Maniou, Sophia; Skoufos, Giorgos; Vergoulis, Thanasis; Dalamagas, Thodoris
TarBase is a reference database dedicated to produce, curate and deliver high quality experimentally-supported miRNA targets on protein-coding transcripts.
database summary
TarBase is a reference database dedicated to produce, curate and deliver high quality experimentally-supported miRNA targets on protein-coding transcripts.
database summary
Tarbase Hatzigeorgiou, Artemis; Skoufos, Giorgos; Kakoulidis, Panos; Tastsoglou, Spyros; Zacharopoulou, Elissavet; Kotsira, Vasiliki; Miliotis, Marios; Mavromati, Galatea; Grigoriadis, Dimitris; Zioga, Maria; Velli, Angeliki; Koutou, Ioanna; Karagkouni, Dimitra;
TarBase-v9.0 extends experimentally supported miRNA-gene interactions to cell-types and virally encoded miRNAs
database summary
TarBase-v9.0 extends experimentally supported miRNA-gene interactions to cell-types and virally encoded miRNAs
database summary
TarBase Vlachos, Ioannis; Paraskevopoulou, Maria; Karagkouni, Dimitra; Georgakilas, Georgios; Vergoulis, Thanasis; Kanellos, Ilias; Anastasopoulos, Ioannis-Laertes; Maniou, Sophia; Karathanou, Konstantina; Kalfakakou, Despina; Dalamagas, Thodoris; Hatzigeorgiou, Artemis
Database of experimental supported microRNA targets
database summary
Database of experimental supported microRNA targets
database summary
Target-Pathogen Fernandez Do Porto, Dario; Sosa, Ezequiel; Burguener, Germán; Lanzarotti, Esteban; Defelipe, Lucas A; Radusky, Leandro; Pardo, AgustÃÂn; MartÃÂ, Marcelo; Turjanski, Adrián
The successful use of antibiotics has been facing challenges because microb
database summary
The successful use of antibiotics has been facing challenges because microb
database summary
TargetGene Jia, Peilin; Lin, Shiqi; Wu, Song; Zhao, Wei27; Fang, Zhanjie; Hongen, Kang; Liu, Xinxuan; Pan, Siyu; Yu, Fudong; Bao, Yi-Ming
TargetGene: a comprehensive database of cell-type-specific target genes for genetic variants
database summary
TargetGene: a comprehensive database of cell-type-specific target genes for genetic variants
database summary
TassDB Hiller M.1, Nikolajewa S.2, Huse K.3, Szafranski K.3, Rosenstiel P.4, Schuster S.2, Backofen R.1 and Platzer M.3
TAndem Splice Site DataBase
database summary
TAndem Splice Site DataBase
database summary
tatDB Grigoriev, Andrey; Guan, Lingyu
Experimentally supported targets of tRNA-derived fragments
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Experimentally supported targets of tRNA-derived fragments
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TBDB Narasimhan, Kamesh; Marchand, Jorge; Smela, Merrick; Jordan, Thomas; Church, George
Structurally annotated T-box riboswitch: tRNA pairs
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Structurally annotated T-box riboswitch: tRNA pairs
database summary
TBestDB O'Brien, E.A.1, Koski, L.1, Zhang, Y.1, Yang, L.1, Wang, E., Gray, M.W.2, Burger, G.1 and Lang, B.F.1
EST sequences and genes from unicellular eukaryotes
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EST sequences and genes from unicellular eukaryotes
database summary
TCDB Saier Jr, Milton H.; Reddy, Vamsee S.; Moreno-Hagelsieb, Gabriel; Hendargo, Kevin J.; Zhang, Yichi; Iddamsetty, Vasu; Lam, Katie Jing Kay; Tian, Nuo; Russum, Steven; Wang, Jianing; Medrano-Soto, Arturo.
Transporter Classification Database
database summary
Transporter Classification Database
database summary
TCGA SpliceSeq Ryan, Michael; Wong, Wing Chung; Brown, Robert; Akbani, Rehan; Su, Xiaoping; Melott, James; Broom, Bradley; Weinstein, John
No description supplied
database summary
No description supplied
database summary
TCOD Zhao, Wen-Ming; Hailong, Kang; Huang, Tianhao; Duan, Guangya; Meng, Yuyan; Chen, Xiaoning; He, Shuang; Xia, Zhiqiang; Zhou, Xincheng; Chao, Jinquan; Tang, Bi-Xia; Wang, Zhonghuang; Zhu, Jun-Wei; Du, Zhenglin; sun, yanling; Zhang, Sisi; Xiao, Jingfa; Tian, Weimin; Wang, Wenquan
TCOD: an integrated resource for tropical crops
database summary
TCOD: an integrated resource for tropical crops
database summary
TcoF-DB Ulf Schaefer 1, Sebastian Schmeier 1 and Vladimir B. Bajic 1
Database for Human Transcription Co-Factors
database summary
Database for Human Transcription Co-Factors
database summary
TcoFBase Li, Chunquan; Zhang, Yuexin; Song, Chao; Zhang, Yimeng; Wang, Yuezhu; Feng, Chenchen; Chen, Jia-Xin; Wei, Ling; Pan, Qi; Shang, Desi; Zhu, Yanbing; Zhu, Jiang',; Fang, Shuangsang; Zhao, Xilong; Xu, Xiaozheng; Wang, Qiuyu; Guo, Jin-Cheng
Transcription co-factors in human and mouse
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Transcription co-factors in human and mouse
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TCRD/Pharos Edwards, Jeremy; Kelleher, Keith; Sheils, Timothy; Mathias, Stephen; Yang, Jeremy; Metzger, Vincent; Siramshetty, Vishal; Nguyen, Dac-Trung; Jensen, Lars,; Vidovic, Dusica; Schürer, Stephan C.; Holmes, Jayme; Jones, Karlie; Pillai, Ajay; Bologa, Cristian;
TCRD and Pharos 2023: An Integrated Resource for the Understudied Human Pro
database summary
TCRD and Pharos 2023: An Integrated Resource for the Understudied Human Pro
database summary
TCSBN Mardinoglu, Adil; Lee, Sunjae; Zhang, Cheng.'; Arif, Muhammad; Liu, Zhengtao; Benfeitas, Rui; Bidkhori, Gholamreza; Deshmukh, Sumit; Al Shobky, Mohamed; Lovric, Alen; Boren, Jan; Nielsen, Jens; Uhlén, Matthias
No description supplied
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No description supplied
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TDRtargets
Identification and ranking of targets against neglected tropical diseases
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Identification and ranking of targets against neglected tropical diseases
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TED - Tomato Functional Genomics Database Zhangjun Fei, Je-Gun Joung, Xuemei Tang, Yi Zheng, Mingyun Huang, Je Min Lee, Ryan McQuinn, Denise M. Tieman, Rob Alba, Harry J. Klee, and James J. Giovannoni
Tomato gene expression database
database summary
Tomato gene expression database
database summary
TEDD Dong, Zirui; Zhou, Ziheng; Tan, Cong; Chau, Matthew Hoi Kin; Jiang, Xiaosen; Ke, Ziyuan; Chen, Xiaoyan; Cao, Ye; Kwok, Yvonne K; Bellgard, Matthew; Leung, Tak Yeung; Choy, Kwong Wai
Temporal Expression of Development Database
database summary
Temporal Expression of Development Database
database summary
Telobase Fojtová, Miloslava; LyÄ\x8Dka, Martin; BubenÃk, Michal; ZávodnÃk, Michal; Peska, Vratislav; Fajkus, Petr; Demko, Martin; Fajkus, Jiri
TeloBase: a community-curated database of telomere sequences across the tree of life
database summary
TeloBase: a community-curated database of telomere sequences across the tree of life
database summary
Telomerase database
Sequences and structures of the RNA and protein subunits of telomerase, mutations of telomerase components
database summary
Sequences and structures of the RNA and protein subunits of telomerase, mutations of telomerase components
database summary
TETSS Zhang, Xiao-Ou; Gu, Xiaobing; Wang, Mingdong
TETSS: an integrated data resource of human and mouse transposable element (TE)-derived transcription start site (TSS)
database summary
TETSS: an integrated data resource of human and mouse transposable element (TE)-derived transcription start site (TSS)
database summary
TF-Marker Li, Chunquan; Xu, Mingcong; Bai, Xuefeng; Ai, Bo; Zhang, Guorui; Song, Chao; Zhao, Jun; Wang, Yuezhu; Wei, Ling; Qian, Feng-Cui; Li, Yanyu; Zhou, Xinyuan; Zhou, Li-Wei; Yang, YongSan; Chen, Jia-Xin; Liu, Jiaqi; Shang, Desi; Wang, Xuan; Zhang, Jian'; Wang,
Human transcription factors, especially as cell markers
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Human transcription factors, especially as cell markers
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TFBSbank Chen, Dongsheng; Jiang, Sanjie; Ma, Xiaoyan; Li, Fang
Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data
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Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data
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TFBSshape Lin Yang1, Tianyin Zhou1, Iris Dror1,2, Anthony Mathelier3, Wyeth W. Wasserman3, Raluca Gordân4, and Remo Rohs1
DNA shape features of transcription factor binding sites
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DNA shape features of transcription factor binding sites
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TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites Chiu, Tsu-Pei;Xin, Beibei;Markarian, Nicholas;Wang, Yingfei;Rohs, Remo
No description supplied
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No description supplied
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TFcheckpoint Acencio, Marcio; Vazquez, Miguel; Chawla, Konika; Lagreid, Astrid; Kuiper, Martin
TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat
database summary
TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat
database summary
TFClass Wingender, Edgar; Schoeps, Torsten; Haubrock, Martin; Krull, Mathias; Doenitz, Juergen
No description supplied
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No description supplied
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TFClass Wingender, Edgar; Schoeps, Torsten; Haubrock, Martin; Doenitz, Juergen
TFClass: An expandable hierarchical classification of human transcription factors
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TFClass: An expandable hierarchical classification of human transcription factors
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TGD - Tetrahymena Genome Database Stover, N.A., Krieger, C.J. and Cherry, J.M.
Tetrahymena thermophila genes, gene products and their annotations.
database summary
Tetrahymena thermophila genes, gene products and their annotations.
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The ABCD database: a repository for chemically defined antibodies Lima, Wanessa C;Gasteiger, Elisabeth;Marcatili, Paolo;Duek, Paula;Bairoch, Amos;Cosson, Pierre
No description supplied
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No description supplied
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The Autism Chromosome Rearrangement Database Zhang J., Kanematsu E., Duggan G., Khaja R., MacDonald J.R. and Scherer S.W.
Curated collection of genomic features related to autism
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Curated collection of genomic features related to autism
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The Chromosome 7 Annotation Project MacDonald J.R., Cheung J., Zhang J., Khaja R., Duggan G., Kanematsu E. and Scherer S.W.
Human chromosome 7 sequence and annotation
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Human chromosome 7 sequence and annotation
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The European Bioinformatics Institute Tools McEntyre, Johanna; Thakur, Matthew; Buniello, Annalisa; Brooksbank, Catherine; Gurwitz, Kim; Hall, Matthew; Mithani, Aziz; Mutasa-Gottgens, Euphemia; Hartley, Matthew; Hulcoop, David; Leach, Andrew R; Martin, Maria; McDonagh, Ellen; Ochoa, David; Perez-Riverol, Yasset; Stephenson, James; Varadi, Mihaly; Velankar, Sameer; Vizcaino, Juan Antonio; Witham, Rick
Data resources at the European Bioinformatics Institute (EMBL-EBI, https://
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Data resources at the European Bioinformatics Institute (EMBL-EBI, https://
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The Immune Epitope Database (IEDB): 2018 update Vita, Randi;Mahajan, Swapnil;Overton, James A;Dhanda, Sandeep Kumar;Martini, Sheridan;Cantrell, Jason R;Wheeler, Daniel K;Sette, Alessandro;Peters, Bjoern
No description supplied
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No description supplied
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The IUPHAR/BPS Guide to PHARMACOLOGY Harding, Simon; Armstrong, Jane; Faccenda, Elena; Southan, Christopherinactive; Alexander, Stephen PH; Davenport, Anthony; Spedding, Michael; Davies, Jamie
The IUPHAR/BPS Guide to PHARMACOLOGY in 2024
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The IUPHAR/BPS Guide to PHARMACOLOGY in 2024
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The Lafora Database Zhang J., MacDonald J.R., Khaja R., Duggan G., Ianzano L., Chan E.M., Lohi H., Minassian B.A. and Scherer SW.
Mutations and polymorphisms associated with Lafora progressive myoclonus epilepsy
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Mutations and polymorphisms associated with Lafora progressive myoclonus epilepsy
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The MemProtMD database: a resource for membrane-embedded protein structures and their lipid interactions Newport, Thomas D;Sansom, Mark S P;Stansfeld, Phillip J
No description supplied
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No description supplied
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The Sequence Read Archive (SRA) Yuichi Kodama, Martin Shumway and Rasko Leinonen
Sequence Read Archive
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Sequence Read Archive
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The Small Subunit rRNA Modification Database
Modified nucleosides in small subunit rRNA
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Modified nucleosides in small subunit rRNA
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The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications Nilsson, Rolf Henrik;Larsson, Karl-Henrik;Taylor, Andy F S;Bengtsson-Palme, Johan;Jeppesen, Thomas S;Schigel, Dmitry;Kennedy, Peter;Picard, Kathryn;Glöckner, Frank Oliver;Tedersoo, Leho;Saar, Irja;Kõljalg, Urmas;Abarenkov, Kessy
No description supplied
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No description supplied
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TheMarker Chen, Yu Zong; ZHANG, Yintao; ZHOU, Ying; Zhou, Yuan; Yu, Xinyuan; Shen, Xinyi; Hong, Yanfeng; Zhang, Yuxin; Wang, Shanshan; Tao, Lin; Qiu, Yunqing; Zhu, Feng
TheMarker: a comprehensive database of therapeutic biomarkers
database summary
TheMarker: a comprehensive database of therapeutic biomarkers
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ThermoMutDB Pires, Douglas E.V.; Xavier, Joicymara; Rezende, Pâmela; Velloso, João; Ascher, David
Protein Mutation Thermodynamics Database
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Protein Mutation Thermodynamics Database
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Thing Metabolome Repository family Sakurai, Nozomu; Yamazaki, Shinichi; Suda, Kunihiro; Hosoki, Ai; Akimoto, Nayumi; Takahashi, Haruya; Shibata, Daisuke; Aoki, Yuichi
LC-MS metabolomics data
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LC-MS metabolomics data
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ThYme David C. Cantu, Yingfei Chen, Matthew L. Lemons, and Peter J. Reilly
Thioester-active enzymes
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Thioester-active enzymes
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TIARA - Total Integrated Archive of short-Read and Array Dongwan Hong1, Sung-Soo Park2, Young Seok Ju1,3,4, Sheehyun Kim1,4, Jong-Yeon Shin1,2, Sujung Kim2, Saet-Byeol Yu2, Won-Chul Lee2, Seungbok Lee5, Hansoo Park6, Jong-Il Kim1,2,5 and Jeong-Sun Seo1,2,3,4,5
Totally Integrated high-resolution Array cgh data and high-throughput sequencing Read data Archive for human whole genomes
database summary
Totally Integrated high-resolution Array cgh data and high-throughput sequencing Read data Archive for human whole genomes
database summary
TIGR Maize database Chan A.P.1, Pertea G.1, Cheung F.1, Lee D.1, Zheng L.1, Whitelaw C.1, Pontaroli A.C.2, SanMiguel P.3, Yuan Y.4, Bennetzen J.2, Barbazuk B.5, Quackenbush J.1,6,7 and Rabinowicz P.D.1
Maize genome sequencing consortium site
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Maize genome sequencing consortium site
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TIGR Plant Transcript Assembly database Childs K.L., Hamilton J., Zhu W., Ly E., Cheung F., Wu H., Rabinowicz P.D., Town C.D., Buell C.R., Chan A.P.
Transcript assemblies of plant EST and cDNA sequences
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Transcript assemblies of plant EST and cDNA sequences
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TIMEDB WANG, XUEYING; Chen, Lingxi; LIU, WEI; ZHANG, Yuanzheng; LIU, Dawei; ZHOU, Chenxin; SHI, Shuai; DONG, Jiajie; LAI, Zhentao; ZHANG, Wenjingyu; ZHAO, Bingran; CHENG, Haoyue; LI, Shuaicheng
RNAseq data and the tumor immune micro-environment
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RNAseq data and the tumor immune micro-environment
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TiProD Chen X.1, Wu J.-M.1, Hornischer K.2, Kel A.2 and Wingender E.2,3
Human promoter sequences
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Human promoter sequences
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TISCH Wang, Chenfei; Sun, Dongqing; Wang, Jin; Han, Ya; Dong, Xin; Zheng, Rongbin; Ge, Jun; Shi, Xiaoying; Wang, Binbin; Li, Ziyi,; Ren, Pengfei; Sun, Liangdong; Yan, Yilv; Zhang, Peng`; Zhang, Fan; Li, Taiwen
Uniformly processed tumor (and microenvironment) scRNA-seq data
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Uniformly processed tumor (and microenvironment) scRNA-seq data
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TISCH Han, Ya; Wang, Yuting; Dong, Xin; Sun, Dongqing; Liu, Zhaoyang; Wang, Haiyun; Li, Taiwen; Wang, Chenfei
TISCH2: expanded datasets and new tools for single-cell transcriptome analy
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TISCH2: expanded datasets and new tools for single-cell transcriptome analy
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TISMO Zeng, Zexian; Wong, Cheryl; Yang, Lin; Ouardaoui, Nofal; Li, Dian; Zhang, Wubing; Gu, Shengqing; Zhang, Yi; Liu, Yang; Wang, Xiaoqing; Fu, Jingxin; Zhou, Liye; Zhang, Boning; Kim, Sarah; Yates, Kathleen B; Brown, Myles; Freeman, Gordon J.; Uppaluri, Ravin
Mouse syngeneic tumor models
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Mouse syngeneic tumor models
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TissGDB Zhao, Zhongming; Kim, Pora; Park, Aekyung; Han, Guangchun; Sun, Hua; Jia, Peilin
Tissue-specific gene expression is critical in understanding biological pro
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Tissue-specific gene expression is critical in understanding biological pro
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TissueNexus Wang, Jianxin; Lin, Cuixiang; Li, Hongdong,; Deng, Chao; Guan, Yuanfang
Tissue or cell line functional gene networks
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Tissue or cell line functional gene networks
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TmAlphaFold Tusnády, Gábor; Dobson, László; Szekeres, Levente; Gerdán, Csongor; Langó, Tamás; Zeke, András
AlphaFold TM protein predictions, membrane-embedded and assessed
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AlphaFold TM protein predictions, membrane-embedded and assessed
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tModBase Lei, Hao-Tian; Wang, Zhang-Hao; Li, Bin ,; Sun, Yang; Mei, Shi-Qiang; Yang, Jian-Hua; Qu, Liang-Hu; Zheng, Lingling
tRNA modifications: enzymes, dynamics, diseases
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tRNA modifications: enzymes, dynamics, diseases
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TMPad Allan Lo, Cheng-Wei Cheng, Yi-Yuan Chiu, Ting-Yi Sung, and Wen-Lian Hsu
Helix-packing folds in transmembrane proteins
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Helix-packing folds in transmembrane proteins
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tmRDB Burks, J1, Zwieb, C2, Gorodkin, J3, Knudsen, B4 and Wower, J4
tmRNA (10Sa RNA) sequences and alignments
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tmRNA (10Sa RNA) sequences and alignments
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TomatEST DB D'Agostino N.1, Aversano M.1, Frusciante L.2 and Chiusano M.L.1
EST collection from multiple tomato species
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EST collection from multiple tomato species
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TopDB Tusnády, Gábor; Dobson, László; Langó, Tamás; Reményi, István
Topology Data Bank of transmembrane proteins
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Topology Data Bank of transmembrane proteins
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TopFIND Nikolaus Fortelny1,2,3,4, Sharon Yang3,5,6, Paul Pavlidis4,7, Philipp F. Lange2,3,* and Christopher M. Overall1,2,3,*
Protein N- and C-termini and protease processing
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Protein N- and C-termini and protease processing
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TOPSAN Kyle Ellrott 1,2, Christian M. Zmasek 3,4, Dana Weekes 1,4, S. Sri Krishna ,4 Constantina Bakolitsa 1,4, Adam Godzik 1,2,3,4 and John Wooley 1,2,4
The Open Protein Structure Annotation Network
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The Open Protein Structure Annotation Network
database summary
ToxoDB - The Toxoplasma gondii Genome Database Kissinger, J.C.1, Gajria, B.2, Li, L.2, Paulsen, I.T.3, Roos, D.S.2
Apicomplexan parasite Toxoplasma gondii genome
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Apicomplexan parasite Toxoplasma gondii genome
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TOXRIC Bo, Xiaochen; Wu, Lianlian; Yan, Bowei; Han, Junshan; He, Song
Toxicological data and benchmarks
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Toxicological data and benchmarks
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TPIA Xia, Enhua; Gao, Qijuan; Tong, Wei; Li, Fangdong; Wang, Yanli; Wu, Qiong; Wan, Xiaochun
TPIA2: an updated tea plant information archive for Camellia genomics
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TPIA2: an updated tea plant information archive for Camellia genomics
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TPMD - Taiwan polymorphic microsatellite marker database
Microsatellite markers genotyped in Taiwanese populations
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Microsatellite markers genotyped in Taiwanese populations
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TRACTOR db abelito@bioinfo.cu
Transcription factors in gamma-proteobacteria database
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Transcription factors in gamma-proteobacteria database
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TransCirc Wang, Zefeng; Huang, Wendi; Ling, Yunchao; Zhang, Sirui; Xia, Qiguang; Cao, Rui-Fang; Fan, Xiao-Juan; Zhang, Guo-Qing
Protein coding potential of circRNAs
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Protein coding potential of circRNAs
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TRANSCompel® Kel-Margoulis, O.1, Kel, A.1, Reuter, I.1, Deineko, I.2, Wingender, E.1
Transcriptional regulation, composite regulatory elements
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Transcriptional regulation, composite regulatory elements
database summary
TRANSFAC® Matys, V., Kel-Margoulis, O.V., Fricke, E., Liebich, I., Land, S., Barre-Dirrie, A., Reuter, I., Chekmenev, D., Krull, M., Hornischer, K., Voss, N., Stegmaier, P., Lewicki-Potapov, B., Saxel, H., Kel, A.E., and Wingender, E.
Transcription factors, gene regulation, positional weight matrices
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Transcription factors, gene regulation, positional weight matrices
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Transformer Preissner, Saskia; Hoffmann, Michael; Preissner, Sarah; nickel, janette; Dunkel, Mathias; Preissner, Robert
Biotransformation of xenobioitics - drugs and food ingredients - by human enzymes
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Biotransformation of xenobioitics - drugs and food ingredients - by human enzymes
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TranslatomeDB Zhang, Gong '; Liu, Wanting; Xiang, Lunping; Zheng, Tingkai
No description supplied
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No description supplied
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TransLnc Li, Yongsheng; Lv, Dezhong; Chang, Zhenghong; Cai, Yangyang; Li, Junyi; Wang, Liping; Jiang, Qiushuang; Xu, Kang1; Ding, Na; Li, Xia; Xu, Juan,
Coding potential of lncRNAs across tissues, including neoantigens
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Coding potential of lncRNAs across tissues, including neoantigens
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TransmiR Juan Wang, Ming Lu, Chengxiang Qiu, and Qinghua Cui
Regulatory relations between transcription factors and microRNAs
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Regulatory relations between transcription factors and microRNAs
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TransmiR v2.0: an updated transcription factor-microRNA regulation database Tong, Zhan;Cui, Qinghua;Wang, Juan;Zhou, Yuan
No description supplied
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No description supplied
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TRANSPATH® Krull, M.1, Pistor, S.1, Voss, N.1, Kel, A.1, Reuter, I.1, Potapov, A.1,2, Choi, C.1, Kel-Margoulis, O.1, Wingender, E.1,2
Signal transduction pathways, vizualization and expression data analysis
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Signal transduction pathways, vizualization and expression data analysis
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TranspoGene
Transposed elements influence on the transcriptome of seven vertebrates and invertebrates
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Transposed elements influence on the transcriptome of seven vertebrates and invertebrates
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TransportDB
Sequences and classification of predicted membrane transporters encoded in complete genomes
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Sequences and classification of predicted membrane transporters encoded in complete genomes
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TRED - Transcriptional Regulatory Element Database
Transcriptional regulatory element database
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Transcriptional regulatory element database
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TreeBase Piel W.H.1 and Miller M.A.2
Phylogenetic trees and the data matrices used to generate them
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Phylogenetic trees and the data matrices used to generate them
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TreeFam Schreiber F, Patricio M, Muffato M, Pignatelli M, Bateman A.
Tree families database: phylogenetic trees of animal genes
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Tree families database: phylogenetic trees of animal genes
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tRFdb Dutta, Anindya; kumar, pankaj; Mudunuri, Suresh; Anaya, Jordan
Short (14-32 nt) tRNA-related fragments
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Short (14-32 nt) tRNA-related fragments
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tRFtarget Wang, Zuoheng; Li, Ningshan; Yao, Siqiong; Yu, Guangjun; Lu, Lingeng
tRFtarget 2.0: expanding the targetome landscape of transfer RNA-derived fragments
database summary
tRFtarget 2.0: expanding the targetome landscape of transfer RNA-derived fragments
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tRFtarget Wang, Zuoheng; Li, Ningshan; Shan, Nayang; Lu, Lingeng
Targets of tRNA-derived fragments
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Targets of tRNA-derived fragments
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TriForC database Goossens, Alain; Miettinen, Karel; Iñigo, Sabrina; Kreft, Lukasz; Pollier, Jacob; De Bo, Christof; Botzki, Alexander; Coppens, Frederik; Bak, Søren
No description supplied
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No description supplied
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TRIP Young-Cheul Shin 1, Soo-Yong Shin 2, Insuk So 1, Dongseop Kwon 3, and Ju-Hong Jeon 1
Protein-protein interactions for mammalian TRP channels
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Protein-protein interactions for mammalian TRP channels
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TropGENE DB Ruiz, M.
Genetics and genomics of tropical crops: sugarcane, banana, cocoa
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Genetics and genomics of tropical crops: sugarcane, banana, cocoa
database summary
TRRUST v2 Lee, Insuk; Han, Heonjong; Cho, Jae-Won; Lee, Sangyoung; Yun, Ayoung; Kim, Hyojin; Bae, Dasom; Yang, Sunmo; Kim, Chanyoung; Lee, Muyoung; Kim, Eunbeen; Lee, Sungho; Kang, Byunghee; Jeong, Dabin; Kim, Yaeji; Jeon, Hyeon-Nae; Jung, Haein; Nam, Sunhwee; Chung, Michael; Kim, Jong-Hoon
No description supplied
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No description supplied
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TrypanoCyc Jourdan, Fabien; Shameer, Sanu; Logan-Klumper, Flora; Vinson, Florence; COTTRET, Ludovic; Merlet, Benjamin; Achcar, Fiona; Boshart, Michael; Berriman, Matt; Breitling, Rainer; Bringaud, Frédéric; Bütikofer, Peter; Cattanach, Amy; Bannerman-Chukualim, Bridget; Creek, Darren; Crouch, Kathryn; de Koning, Harry; Denise, Hubert; Ebikeme, Charles; Fairlamb, Alan; Ferguson, Michael; Hertz-Fowler, Christiane; Kerkhoven, Eduard; Mäser, Pascal; Michels, Paul; Nayak, Archana; Nolan, Derek; Olsen, Christian; Silva-Franco, Fatima; Smith, Terry; Taylor, Martin; Tielens, Aloysius; Urbaniak, Michael; van Hellemond, Jaap; Vincent, Isabel; Wilkinson, Shane; Wyllie, Susan; Opperdoes, Fred; Barrett, Mike; Ginger, Michael
Biochemical pathways of Trypanosoma brucei
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Biochemical pathways of Trypanosoma brucei
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tsRBase Peng, Yong; Zuo, Yuanli; Zhu, Lei; Guo, Zhixin; Liu, Wenrong; Zhang, Jiting; Zeng, Zhen; Wu, Qingbin; Cheng, Jian; Fu, Xin; Jin, Yang; Zhao, Yun
tRNA-derived small RNA expression and function
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tRNA-derived small RNA expression and function
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tsRFun Zheng, Lingling; Wang, Junhao; Chen, Wenxin; Yang, Yuedong.; Yang, Jian-Hua; Qu, Liang-Hu
tsRNA expression and networks
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tsRNA expression and networks
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TSTMP Julia Varga1,2, László Dobson2, István Reményi2 and Gábor E. Tusnády2
Target Selection database for human TransMembrane Proteins
database summary
Target Selection database for human TransMembrane Proteins
database summary
TTD Ying Zhou 1 2 3, Yintao Zhang 1, Donghai Zhao 1, Xinyuan Yu 1, Xinyi Shen 4, Yuan Zhou 1, Shanshan Wang 5, Yunqing Qiu 1 2, Yuzong Chen 6 7, Feng Zhu 1 3
Therapeutic Target Database (TTD) is a database to provide information abou
database summary
Therapeutic Target Database (TTD) is a database to provide information abou
database summary
TTD - Therapeutic Target Database Chen, Yu Zong; Qin, Chu; Zhang, Cheng; Feng, Xu; Zhu, Feng; Chen, Shang Ying; Zhang, Peng;
Therapeutic Target Database
database summary
Therapeutic Target Database
database summary
TTSMI Jenjaroenpun, Piroon; Chew, Chee; YONG, Taipang; Choowongkomon, Kiattawee; Thammasorn, Wimada; Kuznetsov, Vladimir
Triplex Target DNA Sites in the human genome
database summary
Triplex Target DNA Sites in the human genome
database summary
Tumor Associated Gene database Chan H.-H.1, Tsai S.-J.2,3, Sun H.S.1,3
Tumor-associated genes
database summary
Tumor-associated genes
database summary
TumorFusions Zheng, Siyuan; Hu, Xin; Wang, Qianghu; Tang, Ming; Barthel, Floris; Amin, Samirkumar; Yoshihara, Kosuke; Lang, Frederick; Martinez-Ledesma, Emmanuel; Lee, Soo Hyun; Verhaak, Roel
No description supplied
database summary
No description supplied
database summary
TWAS Atlas Xiao, Jingfa; Lu, Mingming; Zhang, Yadong; Yang, Fengchun; Mai, Jialin; Gao, Qainwen; Xu, Xiaowei; Kang, Hongyu; Hou, Li; Shang, Yunfei; Qian, Qiheng; Liu, Jie; Jiang, Meiye; Zhang, Hao; Bu, Congfan; Wang, Jinyue; Zhang, Zhewen; Zhang, Zaichao; Zeng, Jing
Transcriptome-wide association studies
database summary
Transcriptome-wide association studies
database summary
Ubibrowser Li, Dong; Wang, Xun; Li, Yang; He, Mengqi; Kong, Xiangren; Jiang, Peng; Liu, Xi; Diao, Lihong; Zhang, Xinlei; Li, Honglei; Ling, Xinping; Xia, Simin; Liu, Zhongyang; Liu, Yuan; Cui, Chun-Ping; Wang, Yan; Tang, Liujun; Zhang, Lingqiang; He, Fuchu
Proteome-wide ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotes
database summary
Proteome-wide ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotes
database summary
UCNEbase Philipp Bucher
A database of ultraconserved non-coding elements and gene regulatory blocks
database summary
A database of ultraconserved non-coding elements and gene regulatory blocks
database summary
UCSC Archaeal Genome Browser Patricia P. Chan, Andrew D. Holmes, Andrew M. Smith, Danny Tran and Todd M. Lowe
The UCSC Archaeal Genome Browser
database summary
The UCSC Archaeal Genome Browser
database summary
UCSC Cancer Genomics Browser Goldman, Mary; Craft, Brian; Swatloski, Teresa; Cline, Melissa; Morozova, Olena; Diekhans, Mark; Haussler, David; Zhu, Jingchun
Web-based tools to integrate, visualize and analyze cancer genomics and clinical data
database summary
Web-based tools to integrate, visualize and analyze cancer genomics and clinical data
database summary
UCSC Genome Browser Tyner, Cath1, Barber, Galt P.1, Casper, Jonathan1, Clawson, Hiram1, Diekhans, Mark1, Eisenhart, Christopher 1, Fischer, Clayton M.1, Gibson, David1, Navarro Gonzalez, Jairo1, Guruvadoo, Luvina1, Haeussler, Maximilian1, Heitner, Steve 2, Hinrichs, Angie S.1, Karolchik, Donna1, Lee, Brian T.1, Lee, Christopher M.1, Nejad, Parisa1, Raney, Brian J.1, Rosenbloom, Kate R.1, Speir, Matthew L.1, Villarreal, Chris1, Vivian, John1, Zweig, Ann S.1, Haussler, David1,3, Kuhn, Robert M.1, and Kent, W. James1
Genome assemblies and annotation
database summary
Genome assemblies and annotation
database summary
UCSC Genome Browser Raney, Brian; Barber, Galt; Benet Pagès, Anna; Casper, Jonathan; Clawson, Hiram; Cline, Melissa; Diekhans, Mark; Fischer, Clayton; Navarro Gonzalez, Jairo; Hickey, Glenn; Hinrichs, Angie; Kuhn, Robert; Lee, Brian; Lee, Christopher; Le Mercier, philippe; Miga, Karen H.; Nassar, Luis; Nejad, Parisa; Paten, Benedict; Perez, Gerardo; Schmelter, Daniel; Speir, Matthew; Wick, Brittney; Zweig, Ann; Haussler, David; Kent, James; Haeussler, Maximilian
The UCSC Genome Browser database provides high-quality genomics data visual
database summary
The UCSC Genome Browser database provides high-quality genomics data visual
database summary
UCSD-Nature Signaling Gateway Molecule Pages
Expert-authored and peer-reviewed information on mammalian proteins involved in cellular signaling
database summary
Expert-authored and peer-reviewed information on mammalian proteins involved in cellular signaling
database summary
UET Lua, Rhonald; Wilson, Stephen; Konecki, Daniel; Wilkins, Angela; Venner, Eric; Morgan, Daniel; Lichtarge, Olivier
Universal Evolutionary Trace database
database summary
Universal Evolutionary Trace database
database summary
UFCG Kim, Dongwook; Gilchrist, Cameron; Chun, Jongsik; Steinegger, Martin
Fungal core genes
database summary
Fungal core genes
database summary
UgMicroSatdb
UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes
database summary
UniGene MicroSatellite database: short tandem repeats from various eukaryotic genomes
database summary
UMD-BRCA1/BRCA2 databases Sandrine Caputo
BRCA1 and BRCA2 mutations detected in France
database summary
BRCA1 and BRCA2 mutations detected in France
database summary
UniCarbKB Packer, Nicolle; Campbell, Matthew; Peterson, Robyn; Mariethoz, Julien; Gasteiger, Elisabeth;
N- and O-linked glycan structures and biological sources
database summary
N- and O-linked glycan structures and biological sources
database summary
Uniclust Steinegger, Martin; Mirdita, Milot; von den Driesch, Lars; Galiez, Clovis; Martin, Maria; Söding, Johannes
Clustered protein sequences and multiple sequence alignments
database summary
Clustered protein sequences and multiple sequence alignments
database summary
UniHI Futschik, Matthias; Kalathur, Ravi; Pinto, José; Hernandez-Prieto, Miguel; Machado, Rui; Chaurasia, Gautam
Unified Human Interactome: human protein-protein interactions
database summary
Unified Human Interactome: human protein-protein interactions
database summary
UniLectin Lisacek, Frederique; Schnider, Boris; M'Rad, Yacine; El Ahmadie, Jalaa; de Brevern, Alexandre; Imberty, Anne
HumanLectome, an update of UniLectin for the annotation and prediction of human lectins
database summary
HumanLectome, an update of UniLectin for the annotation and prediction of human lectins
database summary
UniParc Apweiler R.1, Bairoch A.2 and Wu C.H.3,4
UniProt archive: a repository of all protein sequences
database summary
UniProt archive: a repository of all protein sequences
database summary
UniPROBE Hume, Maxwell; Barrera, Luis; Gisselbrecht, Steve; Bulyk, Martha
Universal Protein binding microarray Resource for Oligonucleotide Binding Evaluation
database summary
Universal Protein binding microarray Resource for Oligonucleotide Binding Evaluation
database summary
UniRef Apweiler R.1, Bairoch A.2 and Wu C.H.3,4
UniProt non-redundant reference databases: clustered sets of related sequences.
database summary
UniProt non-redundant reference databases: clustered sets of related sequences.
database summary
UniSave Apweiler R.1, Bairoch A.2 and Wu C.H.3,4
UniProtKB Sequence/Annotation Version Archive
database summary
UniProtKB Sequence/Annotation Version Archive
database summary
UniSTS
Unified non-redundant view of sequence tagged sites with marker and mapping data from a variety of resources
database summary
Unified non-redundant view of sequence tagged sites with marker and mapping data from a variety of resources
database summary
UNITE Abarenkov, Kessy; Nilsson, Henrik; Larsson, Karl-Henrik; Taylor, Andy F. S.; May, Tom; Frøslev, Tobias; Pawlowska, Julia; Lindahl, Björn; Põldmaa, Kadri; Truong, Camille; Vu, Duong; Hosoya, Tsuyoshi; Niskanen, Tuula; Piirmann, Timo; Ivanov, Filipp; Zirk, Allan; Peterson, Marko; Cheeke, Tanya; Ishigami, Yui; Jansson, Arnold; Jeppesen, Thomas; Kristiansson, Erik,; Mikryukov, Vladimir; Miller, Joseph; Oono, Ryoko; Ossandon, Francisco; Paupério, Joana; Saar, Irja; Schigel, Dmitry; Suija, Ave; Tedersoo, Leho; Koljalg, Urmas
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa, and classifications reconsidered
database summary
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa, and classifications reconsidered
database summary
UniTmp Tusnády, Gábor; Dobson, László; Gerdán, Csongor; Tusnády, Simon; Szekeres, Levente; Kuffa, Katalin; Langó, Tamás; Zeke, András
UniTmp: Unified resources for transmembrane proteins
database summary
UniTmp: Unified resources for transmembrane proteins
database summary
UniTrap
Unambiguous insertions in the same subgenic regions of annotated mouse genes
database summary
Unambiguous insertions in the same subgenic regions of annotated mouse genes
database summary
UniVec
Vector sequences, adapters, linkers and primers used in DNA cloning, can be used to check for vector contamination
database summary
Vector sequences, adapters, linkers and primers used in DNA cloning, can be used to check for vector contamination
database summary
University of Pittsburgh Bioinformatics Resources Collection Chen Y.-B.1, Chattopadhyay A1, Bergen P.1, Gadd C.2, Tannery, N.1
A collection of bioinformatic databases and software tools
database summary
A collection of bioinformatic databases and software tools
database summary
uORFdb Manske, Felix; Ogoniak, Lynn; Jürgens, Lara; Grundmann, Norbert; Makałowski, Wojciech; Wethmar, Klaus
The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research
database summary
The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research
database summary
uORFdb Wethmar, Klaus; Barbosa da Silva, Adriano; Andrade-Navarro, Miguel; Leutz, Achim
Upstream ORFs and their effect of translation of downstream CDSs
database summary
Upstream ORFs and their effect of translation of downstream CDSs
database summary
UTexas Aptamer Database Stovall, Gwendolyn; Askari, Ali; Kota, Sumedha; Ferrell, Hailey; Swamy, Shriya; Goodman, Kayla; Okoro, Christine; Spruell Crenshaw, Isaiah; Hernandez, Daniela; Oliphant, Taylor; Badrayani, Akshata; Ellington, Andrew
UTexas Aptamer Database: The Collection and Long-Term Preservation of Aptamer Sequence Information
database summary
UTexas Aptamer Database: The Collection and Long-Term Preservation of Aptamer Sequence Information
database summary
UTGB/medaka
University of Tokyo Genome Browser of medaka fish (Oryzias latipes) genomic data
database summary
University of Tokyo Genome Browser of medaka fish (Oryzias latipes) genomic data
database summary
UTRdb Lo Giudice, Claudio; Zambelli, Federico.; Chiara, Matteo; Pavesi, Giulio; Tangaro, Marco Antonio; Picardi, Ernesto; Pesole, Graziano
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untr
database summary
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untr
database summary
UTRdb/UTRsite Pesole, G.1, Liuni, S.2, Grillo, G.2, Licciulli, F.3, Mignone, F.1, Gissi, C.1, Saccone, C.3
5' and 3' UTRs of eukaryotic mRNAs and relevant functional patterns
database summary
5' and 3' UTRs of eukaryotic mRNAs and relevant functional patterns
database summary
VADE Imanishi, Tadashi; Nagai, Yoko; Takahashi, Yasuko
VarySysDB Disease Edition: Disease-associated genomic polymorphisms
database summary
VarySysDB Disease Edition: Disease-associated genomic polymorphisms
database summary
ValidatorDB Sehnal, David; Svobodová VaÃ…â„¢eková, Radka; Pravda, Lukáš; Ionescu, Crina-Maria; Geidl, Stanislav; Horský, VladimÃÂr; Jaiswal, Deepti; Wimmerova, Michaela; KoÄ\x8Da, Jaroslav
Precomputed validation results for ligands and residues in the PDB
database summary
Precomputed validation results for ligands and residues in the PDB
database summary
VannoPortal Li, Mulin Jun; Huang, Dandan; Zhou, Yao1; Yi, Xianfu; Fan, Xutong; Wang, Jianhua; Yao, Hongcheng; Sham, Pak
Human genetic variants vs traits and diseases
database summary
Human genetic variants vs traits and diseases
database summary
VARAdb Li, Chunquan; Pan, Qi; Liu, Yuejuan; Bai, Xuefeng; Han, Xiaole; Jiang, Yong'; Ai, Bo; Shi, Shanshan; Wang, Fan,; Xu, Mingcong; Wang, Yuezhu; Zhao, Jun; Chen, Jia-Xin; Zhang, Jian'; Li, Xuecang; Zhu, Jiang',; Zhang, Guorui; Wang, Qiuyu
Variants and regulatory information
database summary
Variants and regulatory information
database summary
VarCards Li, Jinchen; Wang, Zheng; Zhao, Guihu; Zhu, Zhaopo; Zhang, Shiyu; Wang, Yijing; Luo, Tengfei; Zhou, Qiao; Qiu, Jian; Tang, Beisha; Xia, Kun; Li, Bin
VarCards2: an integrated genetic and clinical database for ACMG-AMP variant-interpretation guidelines in human whole genome
database summary
VarCards2: an integrated genetic and clinical database for ACMG-AMP variant-interpretation guidelines in human whole genome
database summary
VarCards Sun, zhongsheng; Li, Jinchen; Shi, Leisheng; Zhang, Kun; Zhang, Yi; Zhao, Tingting; Teng, Huajing; Li, Xianfeng'; Jiang, Yi; Ji, Liying
No description supplied
database summary
No description supplied
database summary
VarEPS Wu, Linhuan; Sun, Qinglan; Shu, Chang; Shi, Wenyu; Luo, Yingfeng; Fan, Guomei; Nie, Jingyi; Bi, Yuhai; Wang, Qihui; Qi, Jianxun; Lu, Jian; Zhou, Yuanchun; Shen, Zhihong; Meng, Zhen; Zhang, Xinjiao; Yu, Zhengfei; Gao, Shenghan; Ma, Juncai; Hu, Songnian
SARS-CoV-2 variants, known and theoretical, vs therapies
database summary
SARS-CoV-2 variants, known and theoretical, vs therapies
database summary
VarEPS-influ Wu, Linhuan; Shu, Chang; Sun, Qinglan; Fan, Guomei; Peng, Kesheng; Yu, Zhengfei; Luo, Yingfeng; Gao, Shenghan; Deng, Tao; Ma, Juncai; Hu, Songnian
VarEPS-Influ:an evaluation and prewarning system of occurred and virtual variations of Influenza Virus genomes
database summary
VarEPS-Influ:an evaluation and prewarning system of occurred and virtual variations of Influenza Virus genomes
database summary
VARIDT Jiayi Yin, Wen Sun, Fengcheng Li, Jiajun Hong, Xiaoxu Li, Ying Zhou, Yinjing Lu, Mengzhi Liu, Xue Zhang, Na Chen, Xiuping Jin, Jia Xue, Su Zeng, Lushan Yu, Feng Zhu
Variability of Drug Transporter Database
database summary
Variability of Drug Transporter Database
database summary
VARIDT Zhu, Feng; Fu, Tingting; Li, Fengcheng; Zhang, Yang; Yin, Jiayi; QIU, Wenqi; Li, Xuedong; Liu, Xingang; Xin, Wenwen; Wang, Chengzhao; Yu, Lushan; Zheng, Qingchuan; Zeng, Su
VARIDT 2.0: Structural Variability of Drug Transporter
database summary
VARIDT 2.0: Structural Variability of Drug Transporter
database summary
VARIDT Zhu, Feng; Yin, Jiayi; CHEN, Zhen; You, Nanxin; Li, Fengcheng; Zeng, Su
VARIDT 3.0: regulatory variability of drug transporter
database summary
VARIDT 3.0: regulatory variability of drug transporter
database summary
VBASE2 Retter, I.1, Althaus, H.H.2,3, MÜnch, R.4 and MÜller, W.1
Variable genes from the Ig loci of human and mouse
database summary
Variable genes from the Ig loci of human and mouse
database summary
VDJdb Chudakov, Dmitry; Shugay, Mikhail; Bagaev, Dmitriy; Zvyagin, Ivan; Vroomans, Renske; Crawford, Jeremy; Dolton, Garry; Komech, Ekaterina; Sycheva, Anastasiya; Koneva, Anna; van Dyk, Ewald; Dash, Pradyot; Attaf, Meriem; Rius, Cristina; Ladell, Kristin; McLaren, James; Clemens, E; Douek, Danny; Luciani, Fabio; van Baarle, D; Kesmir, Can; Kedzierska, Katherine; Thomas, Paul G; Price, David A; Sewell, Andy
The primary goal of VDJdb is to facilitate access to existing information o
database summary
The primary goal of VDJdb is to facilitate access to existing information o
database summary
VectorBase Emrich, Scott; Giraldo-Calderon, Gloria; MacCallum, Robert; Maslen, Gareth; Gesing, Sandra; Dialynas, Emmanuel; Topalis, Pantelis; Ho, Nicholas; Madey, Greg; Collins, Frank; Lawson, Dan
Invertebrate Vectors of Human Pathogens
database summary
Invertebrate Vectors of Human Pathogens
database summary
VEGA Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S, Wilming LG.
Vertebrate genome annotation database
database summary
Vertebrate genome annotation database
database summary
Vesiclepedia Mathivanan, Suresh; Chitti, Sai V.; Gummadi, Sriram; Kang, Taeyoung; Shahi, Sanjay; Marzan, Akbar L.; Nedeva, Christina; Sanwlani, Rahul; Bramich, Kyle; Stewart, Sarah; Petrovska, Monika; Sen, Biswadeep; Ozkan, Alper; Akinfenwa, Maria; Fonseka, Pamali
Vesiclepedia 2024: An extracellular vesicles and extracellular vesicle-like nanoparticles repository
database summary
Vesiclepedia 2024: An extracellular vesicles and extracellular vesicle-like nanoparticles repository
database summary
VEuPathDB Harb, Omar; Amos, Beatrice; Aurrecoechea, Cristina; Barba, Matthieu; Barreto, Anna; Basenko, Evelina; Bażant, Wojciech; Belnap, Robert; Blevins, Ann; Boehme, Ulrike; Brestelli, John; Brunk, Brian; Caddick, Mark; Callan, Danielle; Christensen, Mikkel; Chri
Genomics of eukaryote pathogens and their vectors
database summary
Genomics of eukaryote pathogens and their vectors
database summary
VEuPathDB Warrenfeltz, Susanne; Alvarez-Jarreta, Jorge; Amos, Beatrice; Aurrecoechea, Cristina; Bah, Saikou; Barba, Matthieu; Barreto, Anna; Basenko, Evelina; Belnap, Robert; Blevins, Ann; Boehme, Ulrike; Brestelli, John; Brown, Stuart; Callan, Danielle; Campbell, Lahcen; Christophides, George; Crouch, Kathryn; Davison, Helen; DeBarry, Jeremy; Demko, Richard; Douherty, Ryan; Duan, Yikun; Dundore, Walter; Dyer, Sarah; Falke, Dave; Fisher, Steve; Gajria, Bindu; Galdi, Daniel; Giraldo-Calderon, Gloria; Harb, Omar; Harper, Elizabeth; Helb, Danica; Howington, Connor; Hu, Sufen; Humphrey, Jay; Iodice, John; Jones, Andrew; Judkins, John; Kelly, Sarah; Kissinger, Jessica; Kittur, Nupur; Kwon, Dae; Lamoureuxx, Kristopher; Li, Wei; Lodha, Disha; MacCallum, Robert; Maslen, Gareth; McDowell, Mary Ann; Myers, Jeremy; Mural, Mustafa; Roos, David; Rund, Samuel; Shanmugasundram, Achchuthan; Sitnik, Vasily; Spruill, Drew; Starns, David; Tomko, Sheena; Wang, Haiming; Wieck, Robert; Wilkinson, Paul; Zheng, Jie2
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.
database summary
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.
database summary
VFDB Yang, Jian; Liu, Bo `; Zheng, Dandan; Zhou, Siyu,; Chen, Lihong,
VFDB 2022: a general classification scheme for bacterial virulence factors
database summary
VFDB 2022: a general classification scheme for bacterial virulence factors
database summary
VFDB - Virulence Factors Database Liu, Bo; Zheng, Dandan; Zhou, Siyu; Chen, Lihong; Yang, Jian
Reference database for microbial virulence factors
database summary
Reference database for microbial virulence factors
database summary
ViBrism DB Masahiko Morita1, Kazuro Shimokawa2, Masaomi Nishimura1, Sakiko Nakamura1, Yuki Tsujimura1, Satoko Takemoto1, Takehiro Tawara1, Hideo Yokota1, Shuhei Wemler3, Daisuke Miyamoto4, Hidetoshi Ikeno5, Akira Sato6, Teiichi Furuichi6, Norio Kobayashi7, Yoshihiro Okumura8, Yoko Yamaguchi8 and Yuko Okamura-Oho1,9
ViBrism DB (http://vibrism.neuroinf.jp/) is a database for anatomical gene
database summary
ViBrism DB (http://vibrism.neuroinf.jp/) is a database for anatomical gene
database summary
ViMIC Zhang, Xiaoyan; Wang, Ying; Tong, Yuantao; Zhang, Zeyu; Zheng, Rongbin; Huang, Danqi; Yang, Jinxuan; Zong, Hui; Tan, Fanglin; Xie, Yujia; Huang, Honglian
Virus Mutations, Integration sites and Cis-effects
database summary
Virus Mutations, Integration sites and Cis-effects
database summary
VIOLIN He, Yongqun; Racz, Rebecca; Sayers, Samantha; Lin, Yu; Todd, Thomas; Hur, Junguk; Li, Xinna; Patel, Mukti; Zhao, Boyang; Chung, Monica; Ostrow, Joseph; Sylora, Andrew; Dungarani, Priya; Ulysse, Guerlain; Kochhar, Kanika; Vidri, Boris; Strait, Kelsey; Jourdian, George; Xiang, Zuoshuang
Vaccine Investigation and Online Information Network
database summary
Vaccine Investigation and Online Information Network
database summary
VIPERdb Reddy, Vijay; Montiel-Garcia, Daniel; Santoyo-Rivera, Nelly; Ho, Phuong; Carrillo-Tripp, Mauricio; Brooks, III, Charles; Johnson, Jack
VIrus Particle ExploreR data base
database summary
VIrus Particle ExploreR data base
database summary
ViPR Pickett, Brett; Sadat, Eva; Zhang, Yun,; Noronha, Jyothi; Squires, Richard; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larsen, Christopher; Dietrich, Jon; Klem, Ed; Scheuermann, Richard
Virus Pathogen and analysis Resource
database summary
Virus Pathogen and analysis Resource
database summary
Viral Bioinformatics Resource Upton C.1 and Lefkowitz E.J.2
Viral genomes, orthologous genes and gene families
database summary
Viral genomes, orthologous genes and gene families
database summary
Viral Genomes Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Obichuck, Alejandro A. Schäffer and J. Rodney Brister
Nucleotide and protein sequences of viral reference genomes
database summary
Nucleotide and protein sequences of viral reference genomes
database summary
ViralORFeome (discontinued) J. Pellet, L. Tafforeau, M. Lucas-Hourani, V. Navratil, L. Meyniel, G. Achaz, A. Guironnet-Paquet, A. Aublin-Gex, G. Caignard, P. Cassonnet, A. Chaboud, T. Chantier, A. Deloire, C. Demeret, M. Le Breton, G. Neveu, L. Jacotot, P. Vaglio, S. Delmotte, C. Gautier, C. Combet, G. Deleage, M. Favre, F. Tangy, Y. Jacob, P. Andre, V. Lotteau, C. Rabourdin-Combe, and P. O. Vidalain
A reference collection of viral ORFs and their clones
database summary
A reference collection of viral ORFs and their clones
database summary
ViralZone Chantal Hulo 1, Edouard de Castro 1, Patrick Masson 1, Lydie Bougueleret 1,Amos Bairoch 2,3, Ioannis Xenarios 1,4 and Philippe Le Mercier 1
Molecular and epidemiological information on viral genera and families
database summary
Molecular and epidemiological information on viral genera and families
database summary
ViralZone Le Mercier, philippe; De Castro, Edouard; Hulo, Chantal; Masson, Patrick; Auchincloss, Andrea; Bridge, Alan J
ViralZone 2024 provides higher-resolution images and advanced virus-specific resources.
database summary
ViralZone 2024 provides higher-resolution images and advanced virus-specific resources.
database summary
ViRBase Wang, Dong; Cheng, Jun; Lin, Yunqing; Xu, Linfu; Chen, Chenke; Kang, Juanjuan; Cui, Tianyu; Li, Qi; Xu, Kaixin; Ning, Lin; Huang, Yan; Zhao, Xiaoyang; Su, Xi; Li, Yan- Hui; Yang, Bin
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with
database summary
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with
database summary
ViRBase Yanhui Li; Changliang Wang; Zhengqiang Miao; Xiaoman Bi; Deng Wu; Nana Jin; Liqiang Wang; Hao Wu; Kun Qian; Chunhua Li; Ting Zhang; Chunrui Zhang; Ying Yi; Hongyan Lai; Yongfei Hu; Lixin Cheng; Kwong-Sak Leung; Xiaobo Li; Fengmin Zhang; Kongning Li; Xia Li; Dong Wang
Virus-host interaction-associated ncRNA
database summary
Virus-host interaction-associated ncRNA
database summary
VirHostNet Guirimand, Thibaut; Delmotte, Stéphane; Navratil, Vincent
A knowledgebase of virus-host molecular interaction networks
database summary
A knowledgebase of virus-host molecular interaction networks
database summary
ViroidDB Lee, Benjamin; Neri, Uri; Oh, Caleb; Simmonds, Peter`; Koonin, Eugene
Viroids and viroid-like circular RNA agents
database summary
Viroids and viroid-like circular RNA agents
database summary
VirOligo Onodera K., Song Y. and Melcher U.
Virus-specific oligonucleotides for PCR and hybridization
database summary
Virus-specific oligonucleotides for PCR and hybridization
database summary
Virus Mentha Calderone, Alberto; Licata, Luana; Cesareni, Gianni
Virus-host protein interactions
database summary
Virus-host protein interactions
database summary
Virus Taxonomy Lefkowitz, Elliot; Dempsey, Donald; Hendrickson, Robert; Orton, Richard; Smith, Donald
No description supplied
database summary
No description supplied
database summary
ViruSurf Arif Canakoglu1, Pietro Pinoli1, Anna Bernasconi1, Tommaso Alfonsi1, Damianos P. Melidis2 and Stefano Ceri1
Integrated database to investigate viral sequences
database summary
Integrated database to investigate viral sequences
database summary
VISTA Enhancer Browser Visel A.1, Minovitsky S.1, Dubchak I.1,2 and Pennacchio L.A.1,2
Enhancer elements in the human genome
database summary
Enhancer elements in the human genome
database summary
Voronoia
A database for the computation of atomic packing density values of protein structures
database summary
A database for the computation of atomic packing density values of protein structures
database summary
VThunter Chen, Dongsheng; Tan, Cong; Ding, Peiwen; Luo, Lihua; Zhu, Jiacheng; Jiang, Xiaosen; Ou, Zhihua; Ding, Xiangning; Lan, Tianming; Zhu, Yixin; Jia, Yi; Wei, Yanan; Li, Runchu; Qin, Qiuyu; Sun, chengcheng; Zhao, Wandong; Lv, Zhiyuan; Wang, Haoyu; Wu, Wendi;
scRNA-seq-based analysis of virus receptor expression across animals
database summary
scRNA-seq-based analysis of virus receptor expression across animals
database summary
WALTZ-DB Nikolaos Louros, Katerina Konstantoulea, Matthias De Vleeschouwer, Meine Ramakers, Joost Schymkowitz, Frederic Rousseau
The Switch Lab introduces WALTZ-DB 2.0, an open-access database containing
database summary
The Switch Lab introduces WALTZ-DB 2.0, an open-access database containing
database summary
WDCM Ma, Juncai; Wu, Linhuan; Sun, Qinglan; DESMETH, Philippe; Sugawara, Hideaki; McCluskey, Kevin; Smith, David; Alexander, Vasilenko; Lima, Nelson; Ohkuma, Moriya; Robert, Vincent; Zhou, Yuguang; Li, Jianhui; Fan, Guomei; Ingsriswang, Supawadee; Ozerskaya, Svetlana
World Data Center of Microorganisms collections
database summary
World Data Center of Microorganisms collections
database summary
WDDD - Worm Developmental Dynamics Database Kyoda, K.1,2,3, Adachi, E. 2,3, Masuda, E. 4, Nagai, Y. 4, Suzuki, Y. 4, Oguro, T. 4, Urai, M. 4, Arai, R. 3, Furukawa, M. 3, Shimada, K. 2, Kuramochi, J. 2, Nagai, E. 2, and Onami, S. 1,2,3,4,5,6
Worm Developmental Dynamics Database
database summary
Worm Developmental Dynamics Database
database summary
WDSPdb Wu, Yun-dong; Wang, Yang; Hu, Xue-Jia; Zou, Xu-Dong; Wu, Xian-hui; Ye, Zhi -Qiang
WD40 domain structure predictions
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WD40 domain structure predictions
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WebGeSTer DB Anirban Mitra 1, Anil K. Kesarwani 2, Debnath Pal 2 and Valakunja Nagaraja 1,3
Genome Scanner for bacterial transcriptional Terminators
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Genome Scanner for bacterial transcriptional Terminators
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webTWAS Cao, Chen; Wang, Jianhua; Kwok, Devin; Zhang, Zilong; Cui, Feifei; Zhao, Da; Jun Li, Mulin; Zou, Quan.
Transcriptome-Wide Association Studies
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Transcriptome-Wide Association Studies
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WeGET Szklarczyk, Radek; Megchelenbrink, Wout; Cizek, Pavel; Ledent, Marie; Szklarczyk, Damian; Velemans, Gonny; Huynen, Martijn
Weighted gene co-expression tool
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Weighted gene co-expression tool
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WERAM Xue, Yu; Xu, Yang,'; Zhang, Shuang; Lin, Shaofeng; Guo, Yaping; Deng, Wankun; Zhang, Ying.
Writers, Erasers and Readers of Histone Acetylation and Methylation
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Writers, Erasers and Readers of Histone Acetylation and Methylation
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wFleaBase Gilbert, D.G. and Colbourne, J.K.
Genome database of the eco-genetic model organism waterflea, Daphnia pulex
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Genome database of the eco-genetic model organism waterflea, Daphnia pulex
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WholeCellKB - Model Organism Databases for Comprehensive Whole-Cell Models Karr, J.R.1, Sanghvi, J.C.2, Macklin, D.N.2, Arora, A.3 and Covert, M.W.2
An integrated pathway/genome database for whole-cell modeling
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An integrated pathway/genome database for whole-cell modeling
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WikiPathways Pico, Alex; Agrawal, Ayushi; Balci, Hasan; Hanspers, Kristina; Coort, Susan; Martens, Marvin; Slenter, Denise; Ehrhart, Friederike; Digles, Daniela; Waagmeester, Andra; Wassink, Isabel; abbassidaloii, t; Lopes, Elisson; Iyer, Aishwarya; Acosta, Javier; Willighagen, Lars; Nishida, Kozo; Riutta, Anders; Basaric, Helena; Evelo, Chris; Willighagen, Egon; Kutmon, Martina
WikiPathways 2024: next generation pathway database
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WikiPathways 2024: next generation pathway database
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WikiPathways Kutmon, Martina; Martens, Marvin; Ammar, Ammar; Riutta, Anders; Waagmeester, Andra; Slenter, Denise; Hanspers, Kristina; Miller, Ryan; Digles, Daniela; Lopes, Elisson; Ehrhart, Friederike; Dupuis, Lauren; Winckers, Laurent; Coort, Susan; Willighagen, Egon
WikiPathways (wikipathways.org) captures the collective knowledge represent
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WikiPathways (wikipathways.org) captures the collective knowledge represent
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WITHDRAWN Drwal, Malgorzata; Siramshetty, Vishal; nickel, janette; Gohlke, Björn; Omieczynski, Christian; Preissner, Robert
Withdrawn and discontinued drugs
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Withdrawn and discontinued drugs
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WITHDRAWN preissner, robert; Gallo, Kathleen; Goede, Andrean; Eckert, Andreas; Gohlke, Björn
Withdrawn 2.0 - update on withdrawn drugs with pharmacovigilance data
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Withdrawn 2.0 - update on withdrawn drugs with pharmacovigilance data
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WormBase Lee, Raymond; Howe, Kevin; Harris, Todd; Valerio, Arnaboldi; CAin, Scott; Chan, Juancarlos; Chen, Wen; Davis, Paul,; Gao, Sibyl; Grove, Christian; Kishore, Ranjana; Müller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael.; Raciti, Daniela; Rodgers, Faye; Russell, Matthew; Schindelman, Gary; Tuli, Mary Ann; Van Auken, Kimberly; Wang, Qinghua; Williams, Gary; Wright, Adam; Yook, Karen; Berriman, Matt; Kersey, Paul; Schedl, Tim; Stein, Lincoln; Sternberg, Paul
WormBase (http://www.wormbase.org) is an important knowledge resource for b
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WormBase (http://www.wormbase.org) is an important knowledge resource for b
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WormBook Girard, L.1, Fiedler, T.3, Harris, T.3, Carvalho, F.4, Antoshechkin, I.1, Han, M.5, Sternberg, P.2, Stein, L.3 and Chalfie, M.6
Peer-reviewed chapters on the biology of C. elegans
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Peer-reviewed chapters on the biology of C. elegans
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WormQTLHD Swertz, Morris; van der Velde, Kasper; de Haan, Mark; Zych, Konrad; Arends, Danny; Snoek, Basten; Kammenga, Jan; Jansen, Ritsert; Li, Yang
Links from human disease to natural variation data in C. elegans
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Links from human disease to natural variation data in C. elegans
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X:MAP
Annotation and visualization of genome structure for Affymetrix exon array analysis
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Annotation and visualization of genome structure for Affymetrix exon array analysis
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Xenbase Karimi, Kamran; Fortriede, Joshua; Lotay, Vaneet; Burns, Kevin; Wang, Dong; Fisher, Malcolm; Pells, Troy; James-Zorn, Christina; Wang, Ying; Ponferrada, Virgilio; Chu, Stanley; Chaturvedi, Praneet; Zorn, Aaron; Vize, Peter
No description supplied
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No description supplied
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XenBase Karpinka, J; Fortriede, Joshua; Burns, Kevin; Ponferrada, Virgilio; James-Zorn, Christina; Lee, Jacqueline M; Karimi, Kamran; Zorn, Aaron; Vize, Peter
Xenopus genomics resource
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Xenopus genomics resource
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XTalkDB Sam, Sarah; Teel, Joelle; Tegge, Allison; Bharadwaj, Aditya; Murali, T. M.
Crosstalk among signaling pathways
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Crosstalk among signaling pathways
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yApoptosis Wanichthanarak K, Cvijovic M, Molt A, Petranovic D.
yeast apoptosis database
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yeast apoptosis database
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Yeast Intron Database Telerski, A.1, Centers, R. J.2, Ares, M.2
Splicesomal introns in Saccharomyces cerevisiae
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Splicesomal introns in Saccharomyces cerevisiae
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YeastNet Lee, Insuk; Kim, Hanhae; Shin, Junha; Kim, Eiru; Kim, Hyojin,; Shim, Jung
Functional gene networks for Saccharomyces cerevisiae
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Functional gene networks for Saccharomyces cerevisiae
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YEASTRACT Teixeira M.C.1,3, Monteiro2, Jain P.2, Tenreiro S.1,3, Fernandes A.R.1,3, Mira N.1,3, Alenquer M.1,3, Freitas A.T.2,3, Oliveira A.L.2,3 and Sá-Correia I.1,3
Yeast transcriptional regulation
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Yeast transcriptional regulation
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YEASTRACT Sá-Correia, Isabel; Teixeira, Miguel; Monteiro, Pedro; Palma, Margarida; Costa, Catarina; Godinho, Cláudia; Pais, Pedro; Cavalheiro, Mafalda; Antunes, Miguel; Lemos, Alexandre; Pedreira, Tiago
No description supplied
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No description supplied
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YEASTRACT+ Monteiro, Pedro ; Teixeira, Miguel; Viana, Romeu; Palma, Margarida; Oliveira, Jorge; Galocha, Mónica; Mota, Marta; Couceiro, Diogo; Galhardas, Maria; Antunes, Miguel; Costa, Inês; Pais, Pedro; Parada, Carolina; Chaouiya, Claudine; Sá-Correia, Isabel
YEASTRACT+: a portal for the exploitation of global transcription regulatio
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YEASTRACT+: a portal for the exploitation of global transcription regulatio
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YM500 Cheng, Wei-Chung; Chung, I-Fang; Tsai, Cheng-Fong; Huang, Tse-Shun; Chen, Chen-Yang; Wang, Shao-Chuan; Chang, Ting-Yu; Sun, Hsing-Jen; Chao, Jeffrey Yung-Chuan; Cheng, Cheng-Chung; Wu, Cheng-Wen; Wang, Hsei-Wei
smRNA-seq database for miRNA research
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smRNA-seq database for miRNA research
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YPA Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu, and Wei-Sheng Wu
Yeast Promoter Atlas
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Yeast Promoter Atlas
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ZEBRA Kern, Fabian; Flotho, Matthias; Amand, Jérémy; Hirsch, Pascal; Grandke, Friederike; Wyss-Coray, Tony; Keller, Andreas
ZEBRA: A hierarchically integrated gene expression atlas of the murine and human brain at single-cell resolution
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ZEBRA: A hierarchically integrated gene expression atlas of the murine and human brain at single-cell resolution
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ZFIN Howe, Douglas; Ramachandran, Sridhar; Bradford, Yvonne; Fashena, David; Toro, Sabrina; Eagle, Anne; Frazer, Ken; Kalita, Patrick; Mani, Prita; Martin, Ryan; Taylor, Sierra; Paddock, Holly; Pich, Christian; Ruzicka, Leyla; Schaper, Kevin; Shao, Xiang; Singer, Amy; van Slyke, Ceri; Westerfield, Monte
The Zebrafish Information Network
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The Zebrafish Information Network
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ZOVER Yang, Jian; Zhou, Siyu,; Liu, Bo `; Han, Yelin; Wang, Yuyang; Chen, Lihong,; Wu, Zhiqiang
Zoonotic and vector-borne viruses
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Zoonotic and vector-borne viruses
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