CATH Structural domains in AlphaFold2 models for 21 model organisms
Creators
- 1. University College London
- 2. Universiti Kebangsaan Malaysia
- 3. Technical University of Munich
- 4. Seoul National University
- 5. EMBL-EBI
Description
CATH structural domain assignments for AlphaFold2 models in 21 model organisms.
The table cath-v4_3_0.alphafold-v2.2022-11-22.tsv contains the domain assignments with information on model quality, CATH superfamily and Class, organism, average pLDDT, percentage of residues not in secondary structure, globularity and domain origin (CATH-PDB, CATH-HMM,Pfam,newfams).
Organisms included:
Arabidopsis thaliana
Caenorhabditis elegans
Candida albicans
Danio rerio
Dictyostelium discoideum
Drosophila melanogaster
Escherichia coli
Glycine max
Homo sapiens
Leishmania infantum
Methanocaldococcus jannaschii
Mus musculus
Mycobacterium tuberculosis
Oryza sativa
Plasmodium falciparum
Rattus norvegicus
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Staphylococcus aureus
Trypanosoma cruzi
Zea mays
The archive
cath-v4_3_0.alphafold-v2.2022-11-22.by_superfamily.tgz
contains all domains assigned by CATH in the dataset as PDB files, divided by superfamily.
Alternatively, if you're interested in a particular organism, an individual tarball containing all CATH domains as PDB files is available
e.g. cath-v4_3_0.alphafold-v2.2022-11-22.arabidopsis_thaliana.tgz
All domains included in this release are named as af_[UniProt_ID]_[start]_[stop].
Files
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