Chapter 2

First Steps of Protein Structure Prediction

Karolina Majorek

Karolina Majorek

Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, 61-614 Poznan, Poland

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Łukasz Kozłowski

Łukasz Kozłowski

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, 02-109 Warsaw, Poland

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Marcin Jąkalski

Marcin Jąkalski

Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, 61-614 Poznan, Poland

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Janusz M. Bujnicki

Janusz M. Bujnicki

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, 02-109 Warsaw, Poland

Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, 61-614 Poznan, Poland

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First published: 18 December 2008
Citations: 1

Summary

This chapter contains sections titled:

  • Introduction

  • Definition of Secondary Structure and Its Assignment for Known Protein Structures

  • Prediction of Secondary Structure and Solvent Accessibility for Water-soluble Proteins

  • Prediction of Secondary Structure for Transmembrane Proteins

  • Prediction of Supersecondary Structure

  • Disorder Prediction

  • Prediction of Long-range Contacts between Amino Acid Residues

  • Summary

  • Acknowledgements

  • References

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