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The origins of enzyme kinetics
Abstract
The equation commonly called the Michaelis–Menten equation is sometimes attributed to other authors. However, although Victor Henri had derived the equation from the correct mechanism, and Adrian Brown before him had proposed the idea of enzyme saturation, it was Leonor Michaelis and Maud Menten who showed that this mechanism could also be deduced on the basis of an experimental approach that paid proper attention to pH and spontaneous changes in the product after formation in the enzyme-catalysed reaction. By using initial rates of reaction they avoided the complications due to substrate depletion, product accumulation and progressive inactivation of the enzyme that had made attempts to analyse complete time courses very difficult. Their methodology has remained the standard approach to steady-state enzyme kinetics ever since.
1 Introduction
Michaelis and Menten are by far the best known of the scientists who created the subject of enzyme kinetics, but what was their real contribution? Have they simply received the credit for work already published by Brown [1] and Henri [2, 3] before their paper of 1913 [4] (Fig. 1 ), as some authors [5, 6] have suggested? Here I shall argue that although earlier authors, especially Henri, made important advances they lacked Michaelis and Menten's insight of realizing that an analysis in terms of initial rates would eliminate the complications that had plagued their predecessors’ efforts to interpret time courses.
2 The basic contribution of Michaelis and Menten
Of course, no discovery appears from nowhere — other, perhaps, than Newton's study of colours [9] — and not only did Brown and Henri contribute, but numerous other developments of the preceding century were also important, including general ideas of chemical kinetics [10], the law of mass action [11], the discovery of a papain–substrate complex [12], and earlier studies of invertase [13, 14]. Nonetheless, Michaelis and Menten's paper [4] represented a major turning point in the history of our understanding of enzyme catalysis, and its effects are still relevant 100 years later, because they defined how kinetic experiments need to be done if useful information is to be obtained from them: they were the first to understand the importance of controlling the pH, and the first to recognize that initial rates are easier to interpret than time courses. Their third contribution — taking account of the effects of spontaneous mutarotation on the kinetics observed by polarimetric methods — was important for the study of invertase, but does not have a wider importance beyond the obvious point that if the products of a reaction undergo spontaneous changes that affect the method of assay this needs to be taken into account. Not only did they define how experiments should be done, but they also carried them out rigorously, and obtained results with a precision that can stand comparison with that obtainable today; almost as important, they described what they had done with sufficient clarity and completeness for Johnson and Goody [15] to be able to repeat them and check them nearly a century later. Unfortunately, not all enzyme kinetic experiments are described so clearly today, and that is why the guidelines proposed by the strenda Commission of the Beilstein-Institut [16, 17] have become necessary.
Two modern translations of Michaelis and Menten's paper are available: one, by Boyde [18], is included in this Special Issue of FEBS Letters, and is based on an earlier one by the same author [19]. The other is a downloadable supplement to the recent paper of Johnson and Goody [15]. Boyde [19] also includes translations of some relevant publications of Henri [2, 3], Sørensen [20] and others. Various of these (but not Michaelis and Menten's paper) have been translated by Friedmann [21].
3 Advances made by other early authors: the enzyme–substrate complex
3.1 Brown and Henri
Most of the early discussion of the enzyme–substrate complex incorporated two assumptions: that it must necessarily participate as an intermediate in the reaction mechanism; and that it was maintained at equilibrium with the free enzyme and substrate. Although Henri [2, 3] thought that its participation as an intermediate was the most likely interpretation, he also considered an alternative possibility, and found that if the complex existed only as a “nuisance complex” in a side reaction the kinetic behaviour would be indistinguishable from that given by assuming it to be an intermediate. That is true so far as the steady state is concerned, but transient-state measurements allow the two possibilities to be distinguished [23, 24]. Non-productive complexes can certainly exist, and can complicate the interpretation of data for enzymes that act in nature on large polymers when studied with small synthetic substrates [25], but no examples are known for which Henri's alternative mechanism is the whole explanation of enzyme saturation.
3.2 Van Slyke and Cullen
Van Slyke and co-workers did not mention Michaelis and Menten's paper, and were almost certainly unaware of it. Much later in his life Van Slyke made an indirect but important contribution to enzymology when he sponsored publication of the theory of induced fit [29]. In 1911, at the beginning of his career, he had worked with Emil Fischer in Berlin, but that did not inhibit him from facilitating the first dent in the long established lock-and-key model of enzyme specificity.
3.3 Reassessing Henri's contribution
4 Michaelis and Menten's experimental approach
4.1 Control of pH
Although the term and definition of pH are rightly associated with Sørensen [20], Michaelis already had a clear grasp of the importance of the concept, and his work on the effect of hydrogen ions on invertase [32] appeared only a short time after publication of Sørensen's analysis. In the previous work on invertase, Henri [2, 3] ignored the question altogether, and Brown [1] reported that control of acidity was not necessary. O'Sullivan and Tompson [13] had carried out many experiments (they referred to “hundreds”) to determine how much acid needed to be added if reproducible results were to be obtained, but they did not attempt a theoretical analysis and simply made a vague statement that “the acidity was in the most favourable proportion”. Presumably Henri and Brown were able to evade the question by using preparations that contained enough natural buffering agents to maintain the pH constant, but it is clear that the reforms introduced by Sørensen [20] and Michaelis [32] are essential for any biochemical experiment today. Michaelis had a long-term interest in hydrogen-ion concentration, and his book [33] became the standard work on the subject. In particular, he introduced the “Michaelis functions” that allow interpretation of bell-shaped pH profiles. As noted already, Van Slyke and Zacharias [28] were also quick to recognize the importance of the hydrogen-ion concentration.
Michaelis's work on hydrogen ions was, in fact, well advanced when Sørensen's paper appeared. He discussed this in his autobiographical notes [34]:
The method of the hydrogen electrode was developed in order to measure the hydrogen ion concentration. It was shown that the effect of an enzyme such as invertase, trypsin, etc. depends on the concentration of the hydrogen ions, and not on the titration acidity. Just when this work was coming to a conclusion, the paper by Sorensen on the same subject was published. However, being familiar with the method, Michaelis, although deprived of the priority, extended these studies by showing that the dependence of enzyme activity on pH was of the same nature as the dependence of the dissociation of a weak acid on pH. The theory of buffers (under the name of “hydrogen ion regulators”) was developed.
4.2 Characterization of inhibitors
4.3 Initial rates
- 1.
Complications due to the progress of the reaction vanish: inhibition by accumulated products, loss of activity of the enzyme, and, in the case of the polarimetric methods used for studying invertase, spontaneous mutarotation of the products.
- 2.
The reverse reaction can be ignored, because it cannot occur until some products have had time to appear.
- 3.
An initial-rate equation is much simpler to derive and use than an equation for the full time course of a reaction.
- 4.
There is no drift in the pH or other conditions at zero time.
4.4 The foundation of steady-state kinetics
The importance of Michaelis and Menten's experimental approach lies in the fact that it was a general procedure, readily applicable to other cases, and easily extensible to take advantage of improvements in techniques and knowledge: if it were no more a method for studying invertase it would be forgotten by now. As already mentioned, Michaelis himself played a large part in developing methods for studying pH dependence [32, 33], as well as methods for characterizing enzyme inhibitors [35, 36].
The basic theory of steady-state enzyme kinetics could then be regarded as complete, and provided a firm foundation for the later development of methods for studying reactions with multiple substrates, reversibility and specificity. Although Haldane mentioned multiple substrates in his book [8], they were first studied in depth in the 1950s [46-48], but this work had comparatively little impact until it was brought into wide use by a set of landmark papers by Cleland [37, 49, 50]. These appeared just at the midpoint between Michaelis and Menten and the present, and thus have their 50th anniversary this year. Sad to report, Mo Cleland had a fatal accident only a few days after he had agreed to contribute to this Special Issue of FEBS Letters.
Haldane's analysis of reversibility [8] had come earlier: it later opened the door to analysis of the relationships between the thermodynamics and kinetics of enzyme catalysis [51-53]; see also the article by Noor et al. [54] in this issue. Just two important other components remained to be added to the basic theory to allow such development. The first was a convenient method for deriving non-trivial rate equations, which was provided by King and Altman's graphical method [55]; this is readily converted to algorithmic for computer implementation [56] and usable with modern packages such as Mathematica™ [57]. The second was the introduction of statistically satisfactory methods of data analysis, which were supplied by Wilkinson [58] and Johansen and Lumry [59] and brought into wide use with Cleland's computer programs [60].
5 The impact of Michaelis and Menten's paper
Not surprisingly, Michaelis and Menten's paper has been very heavily cited (Fig. 2 ), though perhaps less heavily read — a citation error in the well known paper of Lineweaver and Burk [62], which gave the first page as 1333 rather than 333, has been reproduced in at least 27 later publications between 1938 and 2007. After a rapid growth in citation frequency after 1945, the level remained relatively stable until the huge increase that has occurred in the 21st century, with around 30% of all the citations occurring since 1999. This parallels the rise of systems biology, metabolic modelling and kinetic studies with single molecules, and, astonishingly, the year that has seen the greatest number of citations until today is 2011, and every complete year after 2005 has shown a higher level than the peak of 1953.
Other papers by Michaelis related to enzyme kinetics, especially those already mentioned [32, 35, 36] have also been highly cited (Fig. 2b). In the first part of the 20th century these were as heavily cited as that of Michaelis and Menten [4], and despite a decline after 1955 they continue to be cited from time to time today. Michaelis's output in the years leading up to the First World War was enormous, high even by today's standards: 1913 was, in fact, the least productive of the five years from 1910 to 1914, which saw 94 publications, including his book on hydrogen ion concentration [33], and four other books. His later work in Japan [64] and in the USA included numerous major contributions.
The place of Michaelis in the history of enzyme kinetics is thus assured, but what of Menten? She had a long and distinguished career at the University of Pittsburgh, but the work that she published after her brief period in Berlin is not well known by enzymologists, as it took her away from kinetics, and especially into pathology. Her obituary by Stock and Carpenter [65] stated that her reputation rested on three pieces of work in addition to the paper with Michaelis: the discovery of the hyperglycaemic effects of Salmonella toxins [66], an azo-dye coupling method to detect the presence of alkaline phosphatase in the kidney [67], and, in the same year, a method based on sedimentation and electrophoresis to show that the differences between adult and foetal haemoglobins in humans was due to multiple molecular forms ([68]). This last work, potentially important, was overshadowed by a later but far better known application of a similar approach to show the molecular nature of sickle cell anaemia [69], and unfortunately it appears not to have survived modern scrutiny of the methods used (M. Brunori, personal communication).
Acknowledgements
This work was supported by the . I thank María Luz Cárdenas and Jean-Pierre Mazat for helpful comments on the text, and Maurizio Brunori for shedding light on Menten's studies of haemoglobin.