Assignment of Endogenous Substrates to Enzymes by Global Metabolite Profiling†
- Alan Saghatelian
- ,
- Sunia A. Trauger
- ,
- Elizabeth J. Want
- ,
- Edward G. Hawkins
- ,
- Gary Siuzdak
- , and
- Benjamin F. Cravatt
Abstract
Enzymes regulate biological processes through the conversion of specific substrates to products. Therefore, of fundamental interest for every enzyme is the elucidation of its natural substrates. Here, we describe a general strategy for identifying endogenous substrates of enzymes by untargeted liquid chromatography−mass spectrometry (LC−MS) analysis of tissue metabolomes from wild-type and enzyme-inactivated organisms. We use this method to discover several brain lipids regulated by the mammalian enzyme fatty acid amide hydrolase (FAAH) in vivo, including known signaling molecules (e.g., the endogenous cannabinoid anandamide) and a novel family of nervous system-enriched natural products, the taurine-conjugated fatty acids. Remarkably, the relative hydrolytic activity that FAAH exhibited for lipid metabolites in vitro was not predictive of the identity of specific FAAH substrates in vivo. Thus, global metabolite profiling establishes unanticipated connections between the proteome and metabolome that enable assignment of an enzyme's unique biochemical functions in vivo.
†
This work was supported by the NIH (Grants DA015197 and DA017259), the Helen L. Dorris Child and Adolescent Neurological and Psychiatric Disorder Institute, and the Skaggs Institute for Chemical Biology. A.S. is supported by a Merck Fellowship of the Life Sciences Research Foundation.
*
To whom correspondence should be addressed. Phone: (858) 784-8633. Fax: (858) 784-8023. E-mail: [email protected].
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