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Abstract

Noncoding RNAs (ncRNAs) have been found to have roles in a great variety of processes, including transcriptional regulation, chromosome replication, RNA processing and modification, messenger RNA stability and translation, and even protein degradation and translocation. Recent studies indicate that ncRNAs are far more abundant and important than initially imagined. These findings raise several fundamental questions: How many ncRNAs are encoded by a genome? Given the absence of a diagnostic open reading frame, how can these genes be identified? How can all the functions of ncRNAs be elucidated?

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REFERENCES AND NOTES

1
Eddy S. R., Nature Rev. Genet. 2, 919 (2001).
2
Non-mRNAs have been denoted ncRNA = noncoding RNA, snmRNA = small non-mRNA, sRNA = small RNA, fRNA = functional RNA, and oRNA = other RNA, and it is likely that the nomenclature of these RNAs will need to be revisited.
3
Lagos-Quintana M., Rauhut R., Lendeckel W., Tuschl T., Science 294, 853 (2001).
4
Lau N. C., Lim L. P., Weinstein E. G., Bartel D. P., Science 294, 858 (2001).
5
Lee R. C., Ambros V., Science 294, 862 (2001).
6
Mourelatos Z., et al., Genes Dev. 16, 720 (2002).
7
Ruvkun G., Science 294, 797 (2001).
8
Grosshans H., Slack F. J., J. Cell Biol. 156, 17 (2002).
9
Wassarman K. M., Zhang A., Storz G., Trends Microbiol. 7, 37 (1999).
10
Altuvia S., Wagner E. G. H., Proc. Natl. Acad. Sci. U.S.A. 97, 9824 (2000).
11
Sleutels F., Zwart R., Barlow D. P., Nature 415, 810 (2002).
12
Erdmann V. A., Szymanski M., Hochberg A., de Groot N., Barciszewski J., Nucleic Acids Res. 28, 197 (2000).
13
Avner P., Heard E., Nature Rev. Genet. 2, 59 (2001).
14
Wassarman K. M., Storz G., Cell 101, 613 (2000).
15
Yang Z., Zhu Q., Luo K., Zhou Q., Nature 414, 317 (2001).
16
Nguyen V. T., Kiss T., Michels A. A., Bensaude O., Nature 414, 322 (2001).
17
Lanz R. B., et al., Cell 97, 17 (1999).
18
Chen J.-L., Blasco M. A., Greider C. W., Cell 100, 503 (2000).
19
Frank D. N., Pace N. R., Annu. Rev. Biochem. 67, 153 (1998).
20
Will C. L., Lührmann R., Curr. Opin. Cell Biol. 13, 290 (2001).
21
Kiss T., EMBO J. 20, 3617 (2001).
22
T.-H. Tang et al., Proc. Natl. Acad. Sci. U.S.A., in press.
23
Kable M. L., Heidmann S., Stuart K. D., Trends Biochem. Sci. 22, 162 (1997).
24
Simpson L., Thiemann O. H., Savill N. J., Alfonzo J. D., Maslov D. A., Proc. Natl. Acad. Sci. U.S.A. 97, 6986 (2000).
25
Nishikura K., Cell 107, 415 (2001).
26
Zamore P. D., Science 296, 1265 (2002).
27
Massé E., Gottesman S., Proc. Natl. Acad. Sci. U.S.A. 99, 4620 (2002).
28
Gillet R., Felden B., Mol. Microbiol. 42, 879 (2001).
29
Keenan R. J., Freymann D. M., Stroud R. M., Walter P., Annu. Rev. Biochem. 70, 755 (2001).
30
Kuryshev V. Y., Skryabin B. V., Kremerskothen J., Jurka J., Brosius J., J. Mol. Biol. 309, 1049 (2001).
31
Wang W., Brunet F. G., Nevo E., Long M., Proc. Natl. Acad. Sci. U.S.A. 99, 4448 (2002).
32
Lowe T. M., Eddy S. R., Science 283, 1168 (1999).
33
Gaspin C., Cavaillé J., Erauso G., Bachellerie J.-P., J. Mol. Biol. 297, 895 (2000).
34
Olivas W. M., Muhlrad D., Parker R., Nucleic Acids Res. 25, 4619 (1997).
35
Wassarman K. M., Repoila F., Rosenow C., Storz G., Gottesman S., Genes Dev. 15, 1637 (2001).
36
Argaman L., et al., Curr. Biol. 11, 941 (2001).
37
S. Chen et al., Biosystems, in press.
38
R. J. Klein, Z. Misulovin, S. Eddy, Proc. Natl. Acad. Sci. U.S.A., in press.
39
Rivas E., Klein R. J., Jones T. A., Eddy S. R., Curr. Biol. 11, 1369 (2001).
40
Carter R. J., Dubchak I., Holbrook S. R., Nucleic Acids Res. 29, 3928 (2001).
41
Cavaillé J., et al., Proc. Natl. Acad. Sci. U.S.A. 97, 14311 (2000).
42
Hüttenhofer A., et al., EMBO J. 20, 2943 (2001).
43
Selinger D. W., et al., Nature Biotechnol. 18, 1262 (2000).
44
Plant K. E., Routledge S. J. E., Proudfoot N. J., Mol. Cell. Biol. 21, 6507 (2001).
45
Chen X., Quinn A. M., Wolin S. L., Genes Dev. 14, 777 (2000).
46
Gu J., Chen Y., Reddy R., Nucleic Acids Res. 26, 160 (1998).
47
Samarsky D. A., Fournier M. J., Nucleic Acids Res. 27, 161 (1999).
48
Souza A. E., Hermann T., Göringer H. U., Nucleic Acids Res. 25, 104 (1997).
49
Batey R. T., Rambo R. P., Lucast L., Rha B., Doudna J. A., Science 287, 1232 (2000).
50
I thank S. Altuvia, J. Brosius, S. Gottesman, K. M. Wassarman, and A. Zhang for helpful discussions and comments on the manuscript. I also thank them and many other investigators for extensive discussion of the nomenclature.

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Published In

Science
Volume 296 | Issue 5571
17 May 2002

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Published in print: 17 May 2002

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Gisela Storz
Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA. E-mail: [email protected]

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