Mark A. Musen
- Baker, M. (2012). Databases fight funding cuts: online tools are becoming ever more important to biology, but financial support is unstable. Nature, 489(7414):19.Google Scholar
Cross Ref
- Bechhofer, S., Horrocks, I., Goble, C., and Stevens, R. (2001). OilEd: a reason-able ontology editor for the Semantic Web. In: Proceedings of the Joint German/Austrian Conference on Artificial Intelligence, Vienna. Springer-Verlag LNAI Vol. 2174, pp 396--408. Google ScholarDigital Library
- Cardoso, J. (2007). The Semantic Web vision. Where are we? IEEE Intelligent Systems, 22(5):84--88. Google ScholarDigital Library
- Crubézy, M. and Musen, M. A. (2004). Ontologies in support of problem solving. In: Staab, S. and Studer, R. eds. Handbook on Ontologies. Berlin: Springer-Verlag, pp. 321--341.Google ScholarCross Ref
- Eriksson, H., Puerta, A. R., and Musen, M. A. (1994). Generation of knowledge-acquisition tools from domain ontologies. International Journal of Human--Computer Studies, 41:425--453. Google ScholarDigital Library
- Eriksson, H., Shahar, Y., Tu, S. W., Puerta, A. R., and Musen, M. A. (1995). Task modeling with reusable problem-solving methods. Artificial Intelligence, 79:293--326. Google ScholarDigital Library
- Friedland, P. E., and Iwasaki, Y. (1985). The concept and implementation of skeletal plans. Journal of Automated Reasoning, 1(2):161--208.Google ScholarCross Ref
- Ghazvinian, A., Noy, N. F., and Musen, M. A. (2009). Creating mappings for ontologies in biomedicine: simple methods work. In: Proceedings of the AMIA Annual Symposium. American Medical Informatics Association, San Francisco, CA, pp. 198--202.Google Scholar
- Gennari, J. H., Musen, M. A., Fergerson, R. W., Grosso, W. E., Crubézy, M., Eriksson, H., Noy, N. F., and Tu, S. W. (2003). The evolution of Protégé: An environment for knowledge-based systems development. International Journal of Human-Computer Studies, 58(1):89--123. Google ScholarDigital Library
- Guarino, N., and Musen, M. A. (2015). Applied Ontology: The next decade begins. Applied Ontology, 10(1):1--4.Google ScholarCross Ref
- Horridge, M. (2011). A Practical Guide To Building OWL Ontologies Using Protégé 4 and CO-ODE Tools. Edition 1.3. http://mowl-power.cs.man.ac.uk/protegeowltutorial/resources/ProtegeOWLTutorialP4_v1_3.pdf.Google Scholar
- Knublauch, H., Fergerson, R. W., Noy, N. F., Musen, M. A. (2004). The Protégé OWL plugin: an open development environment for Semantic Web applications. In: Third International Conference on the Semantic Web, Hiroshima, Japan, pp. 229--243.Google ScholarDigital Library
- Mortensen, J. M., Minty, E. P., Januszyk, M., Sweeney, T. E., Rector, A. L., Noy, N. F., and Musen, M. A. (2014). Using the wisdom of the crowds to find critical errors in biomedical ontologies: A study of SNOMED CT. Journal of the American Medical Informatics Association. doi:10.1136/amiajnl-2014-002901.Google Scholar
- Musen, M. A. (1989). Automated Generation of Model-Based Knowledge-Acquisition Tools. London: Pitman, Artificial Intelligence Research Notes Series. Google ScholarDigital Library
- Musen, M. A. (2005). Protégé: Community is everything. International Journal of Human--Computer Studies, 62(5):545--552. Google ScholarDigital Library
- Musen, M. A., Fagan, L. M., Combs, D. M., and Shortliffe, E. H. (1987). Use of a domain model to drive an interactive knowledge-editing tool. International Journal of Man--Machine Studies, 26:105--121. Google ScholarDigital Library
- Musen, M. A., Tu, S. W., Das, A. K., and Shahar, Y. (1996). EON: A component-based approach to automation of protocol-directed therapy. Journal of the American Medical Informatics Association, 3:367--388.Google ScholarCross Ref
- Neches, R., Fikes, R. E., Finin, T., Gruber, T. R., Patil, R., Senator, T., and Swartout, W. (1991). Enabling technology for knowledge sharing. Al Magazine, 12(3):36--56. Google ScholarDigital Library
- Noy, N. F. and Musen, M. A. (2003). The PROMPT suite: Interactive tools for ontology merging and mapping. International Journal of Human--Computer Studies, 59(6):983--1024. Google ScholarDigital Library
- Noy, N. F., Sintek, M., Decker, S., Crubézy, M., Fergerson, R. W., and Musen, M. A. (2001). Creating Semantic Web contents with Protégé-2000. IEEE Intelligent Systems, 16(2):60--71. Google ScholarDigital Library
- Noy, N. F., de Coronado, S., Solbrig, H., Fragoso, G., Hartel, F. W. and Musen, M. A. (2008). Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. Applied Ontology, 3(3):173--190, 2008. Google ScholarDigital Library
- Parikh, P. P., Zheng, J., Logan-Klumpler, F., Stoeckert, C. J. Jr., Louis, C., Topalis, P., Protasio, A. V., Sheth, A. P., Carrington, M., Berriman, M., and Sahoo, S. S. (2012). The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary for lifecycle stages in parasitic organisms. Journal of Biomedical Semantics, 3:5.Google ScholarCross Ref
- Schreiber, G., Akkermans, H., Anjewierden, A., de Hoog, R., Shadbolt, N., Van de Velde, W., and Wielinga, B. (2000). Knowledge Engineering and Management: The CommonKADS Methodology. Cambridge, MA: MIT Press. Google ScholarDigital Library
- Stein, A., Musen, M. A., and Shahar, Y. (1996). Knowledge acquisition for temporal abstraction. In: Proceedings of the AMIA Fall Symposium. Washington, DC, pp. 204--208.Google Scholar
- Storey, M.-A., Musen, M. A., Silva, J., Best, C., Ernst, N., Fergerson, R., Noy, N. (2001). Jambalaya: Interactive visualization to enhance ontology authoring and knowledge acquisition in Protégé. In: Workshop on Interactive Tools for Knowledge Capture, First International Conference on Knowledge Capture. Victoria, British Columbia, Canada, pp. 35--43.Google Scholar
- Strohmaier, M., Walk, S., Pöschko, J., Lamprecht, D., Tudorache, T., Nyulas, C., Musen, M. A., Noy, N. F. (2013). How ontologies are made: Studying the hidden social dynamics behind collaborative ontology-engineering projects. Journal of Web Semantics, 20:18--34. Google ScholarDigital Library
- Tu, S. W., Kahn, M. G., Musen, M. A., Ferguson, J. C., Shortliffe, E. H., and Fagan, L. M. (1989). Episodic skeletal-plan refinement based on temporal data. Communications of the Association for Computing Machinery, 32:1439--1455. Google ScholarDigital Library
- Tudorache, T., Falconer, S. M., Nyulas, C. I., Noy, N. F., Musen, M. A. (2010). Will Semantic Web technologies work for the development of ICD-11? In: Ninth International Semantic Web Conference, Shanghai, China. Google ScholarDigital Library
- Tudorache, T. and Musen, M. A. (2011). Collaborative development of large-scale biomedical ontologies. In: Ekins, S., Hupcey, M. A. Z., and Williams, A. J., eds. Collaborative Computational Technologies for Biomedical Research. Hoboken, NJ: John Wiley & Sons.Google Scholar
- Zhang, Y., Tudorache, T., Horridge, M., and Musen, M. A. (2015). Helping users bootstrap ontologies: an empirical investigation. Computer--Human Interaction, Seoul, Korea. Google ScholarDigital Library
Index Terms
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