123 captures

14 Jan 2005 - 14 Jun 2023

Jan	FEB	Aug
	19
2004	2005	2006

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About this capture

COLLECTED BY

Organization: Alexa Crawls

Starting in 1996, Alexa Internet has been donating their crawl data to the Internet Archive. Flowing in every day, these data are added to the Wayback Machine after an embargo period.

Collection: Alexa Crawl EB

Crawl EB from Alexa Internet. This data is currently not publicly accessible.

TIMESTAMPS

Proteins: Biogenesis to Degradation

General

• Biochemistry Online: An Approach Based on Chemical Logic - Biochemistry within the framework of chemical principles and logic. (Henry Jakubowski, College of St. Benedict/St. John's University)
  • Composition, Sequence and Conformational Analysis of Proteins
  • Laboratory Determination of ΔG° for Protein Folding/Unfolding
  • A Model Binding System: Myoglobin. Hemoglobin, and Dioxygen
  • Reversible Binding I: Equations and Curves
  • Reversible Binding II: Experimental Binding Curves, K_d, and Error Analysis
  • Prediction of Secondary and Tertiary Structure From the Primary Sequence
  • Protein Folding - in vivo and in vitro
  • Protein Structure: What's New? Protein Aggregates - Not Junk Anymore
  • The Structure and Property of Amino Acids
  • Thermodynamics and IMFs in Protein Stability
  • Understanding Protein Conformation
• The Medical Biochemistry Page - An excellent biochemistry tutorial with information on a broad range of biochemical pathways. (Michael W. King, Terre Haute Center for Medical Education, Indiana University School of Medicine)
  • Basic Chemistry of Biomolecules
  • Hemoglobin and Myoglobin
  • Ionic Equilibria Review
  • Protein Structure
  • Thermodynamics Review
• MIT Biology Hypertextbook: Proteins - Tutorial on the biochemistry of proteins. (Beginner's Level)
• The Online Macromolecular Museum - A site for the display and study of macromolecular structures, as determined by crystallographic or NMR methods, including proteins and protein complexes. (California Lutheran University)
• Wikipedia - Free online encyclopedia with basic overviews. (Beginner's Level)
• Protein Idenfitication and Sequencing Using Mass Spectrometry Data - Slide-based lesson covering the use of MALDI-TOF, tandem MS, etc. in protein science.
  • Protein
  • Protein Folding
  • Protein Targeting
  • Proteome
  • Proteomics

See also the Chemical Biology, Enzymes, Metabolism, Cellular Respiration and Photosynthesis and Structural Biology pages.

Protein and Proteomics Databases

Enzyme Databases (Collections of Enzyme Functional and Nomenclature Data)

Macromolecular Structure Databases

Post-Translational Modification

• The Medical Biochemistry Page - An excellent biochemistry tutorial with information on a broad range of biochemical pathways. (Michael W. King, Terre Haute Center for Medical Education, Indiana University School of Medicine)
  • Glycoprotein Synthesis
  • Lipoproteins
  • Post-Translational Modification
• Wikipedia - Free online encyclopedia with basic overviews. (Beginner's Level)
  • Post-Translational Modification
    • Acetylation
    • Glycosylation
    • GPI Anchor
    • Phosphorylation

See also the Carbohydrates and Glycosylation page for more information on protein glycosylation and the Structure and Function Prediction Servers section of the Structural Biology page for post-translational modification and other sequence-based prediction servers.

Protein Folding and Unfolding

• The Chaperonin Home Page - A repository for information about the chaperonin class of heat shock proteins (GroEL and GroEL).
• Unraveling the Mystery of Protein Folding - Basic introduction to the protein folding problem. (W. A. Thomasson) (Just above Beginner's Level)

Protein Sorting, Targeting and Secretion

• Genes Involved in Protein Targeting, Asymmetric Cell Division, Apical/Basal Polarity - From The Interactive Fly: Evolutionarily Conserved Pathways. (Society for Developmental Biology)
• Kimball's Biology Pages: Protein Kinesis - Outline of protein targeting, especially secretory pathway. (Beginner's Level)

See also the Lipids, Membranes and Vesicle Trafficking page.

Membrane Proteins

Protein Degradation

• Lysosomal Proteolysis - An introduction to protein degradation in the lysosome with diagrams and images of lysosomes. (Emory University)
• Prolysis - Information on proteases, including the proteasome, and protease inhibitors.
• Protein Degradation Resource - Information on cytosolic and lysosomal protein degradation pathways.
• Ubiquitin and the Biology of the Cell - Online supplement to the book Ubiquitin and the Biology of the Cell.
• The Ubiquitin System for Protein Modification and Degradation - A broad range of information on the ubiquitin/proteasome pathway.

Protein Classes and Families

• The AAA Server - Information and databases on proteins of this proposed protein superfamily (AAA for ATPases Associated with various cellular Activities), which includes a range of proteins involved in processes such as cell cycle regulation, vesicular transport, mitochondrial function, peroxisome assembly and proteolysis (for instance, certain subunits of the 26S proteasome and metalloproteases). (University of Graz, Austria)
• MEROPS Database: Peptidase Clans and Families - Proteases classified into families, clans, and catalytic type based on structural similarities, with links to major database entries. (Wellcome Trust Sanger Institute, Cambridge, UK)
• Protein Domain Database - "The ProDom protein domain database consists of an automatic compilation of homologous domains." (Jerôme Gouzy and Florence Corpet, ProDom Team, Toulouse, France)
• Protein Family Databases - Index of a large number of databases devoted to distinct protein families.
• Serum Proteins - Slide-show on the laboratory methods for studying serum proteins. (Department of Pathology and Laboratory Medicine, Tulane University School of Medicine)

Discussion Groups

• The Virtual Library of Biochemistry and Cell Biology Discussion Board - Conceptual, practical and technical discussions and questions/answers for scientists and students.

• Usenet Newsgroup Archives (from BIOSCI/bionet):
  • FLUORESCENT-PROTEINS/bionet.molbio.proteins.fluorescent - Research on fluorescent proteins and bioluminescence.
  • PEPTIDES/bionet.molecules.peptides - Research involving peptides.
  • PROTEINS/bionet.molbio.proteins - Research on proteins and protein databases.
  • PROTEIN-ANALYSIS/bionet.molbio.proteins - Protein analysis.

See also the Discussion Groups section of the General Biochemistry and Cell Biology page.

Labs Studying Aspects of Protein Biogenesis or Degradation