RCSB PDB

218,853 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

3I85

The Crystal Structure of Human EMMPRIN N-terminal Domain 1

PDB DOI: https://doi.org/10.2210/pdb3I85/pdb

Classification: CELL ADHESION
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2009-07-09 Released: 2009-10-06
Deposition Author(s): Luo, J., Gilliland, G.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257
R-Value Work: 0.227
R-Value Observed: 0.229

wwPDB Validation 3D Report Full Report

This is version 1.5 of the entry. See complete history.

Literature

Structure of the EMMPRIN N-terminal domain 1: Dimerization via beta-strand swapping.

Luo, J., Teplyakov, A., Obmolova, G., Malia, T., Wu, S.J., Beil, E., Baker, A., Swencki-Underwood, B., Zhao, Y., Sprenkle, J., Dixon, K., Sweet, R., Gilliland, G.L.

(2009) Proteins 77: 1009-1014

PubMed: 19768682 Search on PubMed
DOI: https://doi.org/10.1002/prot.22577
Primary Citation of Related Structures:
3I84, 3I85

Organizational Affiliation

Centocor R&D, Inc., 145 King of Prussia Road, Radnor, Pennsylvania 19087, USA. jluo@its.jnj.com

Macromolecule Content

Total Structure Weight: 21.12 kDa
Atom Count: 1,241
Modelled Residue Count: 162
Deposited Residue Count: 196
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cervical EMMPRIN	A, B	98	Homo sapiens	Mutation(s): 2 Gene Names: hEMMPRIN, BSG, hCG_20562
UniProt & NIH Common Fund Data Resources
Find proteins for P35613 (Homo sapiens) Explore P35613 Go to UniProtKB: P35613
PHAROS: P35613 GTEx: ENSG00000172270
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P35613
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.257
R-Value Work: 0.227
R-Value Observed: 0.229
Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.48	α = 90
b = 83.48	β = 90
c = 49.72	γ = 120

Software Package:

Software Name	Purpose
d*TREK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
StructureStudio	data collection
d*TREK	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-10-06

Deposition Author(s):

Gilliland, G.L.

Revision History (Full details and data files)

Version 1.0: 2009-10-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2021-03-31
Changes: Database references, Source and taxonomy
Version 1.4: 2021-10-13
Changes: Database references
Version 1.5: 2023-09-06
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.