4RN5

B1 domain of human Neuropilin-1 with acetate ion in a ligand-binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Conserved water molecules in a ligand-binding site of neuropilin-1

Allerston, C.K.Yelland, T.S.Jarvis, A.Jenkins, K.Winfield, N.Cheng, L.Jia, H.Zachary, I.Selwood, D.L.Djordjevic, S.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
Molecule Chains  Sequence Length Organism Details Image
Neuropilin-1
A
158 Homo sapiens Mutation(s): 0 
Gene Names: NRP1NRPVEGF165R
UniProt & NIH Common Fund Data Resources
Find proteins for O14786 (Homo sapiens)
Explore O14786 
Go to UniProtKB:  O14786
PHAROS:  O14786
GTEx:  ENSG00000099250 
Entity Groups  
Sequence Clusters 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group O14786
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å ) Angle ( ˚ )
a = 62.839 α = 90
b = 62.839 β = 90
c = 87.918 γ = 90
Software Package:
Software Name Purpose
CrystalClear data collection
PHASER phasing
PHENIX refinement
d*TREK data reduction
SCALA data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-10-28
    Type: Initial release