ACS Publications. Most Trusted. Most Cited. Most Read
My Activity
CONTENT TYPES

Figure 1Loading Img

Pre-Steady-State Kinetic Studies of the Reductive Dehalogenation Catalyzed by Tetrachlorohydroquinone Dehalogenase

View Author Information
University of Colorado at Boulder, Department of Molecular, Cellular, and Developmental Biology and Cooperative Institute for Research in Environmental Sciences, University of Colorado at Boulder, Boulder, Colorado 80309
Cite this: Biochemistry 2007, 46, 45, 13211–13222
Publication Date (Web):October 23, 2007
https://doi.org/10.1021/bi701069n
Copyright © 2007 American Chemical Society

    Article Views

    411

    Altmetric

    -

    Citations

    31
    LEARN ABOUT THESE METRICS
    Other access options
    Supporting Info (1)»

    Abstract

    Abstract Image

    Tetrachlorohydroquinone dehalogenase catalyzes two successive reductive dehalogenation reactions in the pathway for degradation of pentachlorophenol in the soil bacterium Sphingobium chlorophenolicum. We have used pre-steady-state kinetic methods to probe both the mechanism and the rates of elementary steps in the initial stages of the reductive dehalogenation reaction. Binding of trichlorohydroquinone (TriCHQ) to the active site is followed by rapid deprotonation to form TriCHQ-2 and subsequent formation of 3,5,6-trichloro-4-hydroxycyclohexa-2,4-dienone (TriCHQ*). Further conversion of TriCHQ* to 2,6-dichlorohydroquinone (DCHQ) proceeds only in the presence of glutathione. Conversion of TriCHQ to DCHQ during the first turnover is quite rapid, occurring at about 25 s-1 when the enzyme is saturated with TriCHQ and glutathione. The rate of subsequent turnovers is limited by the rate of the thiol−disulfide exchange reaction required to regenerate the free enzyme after turnover, a reaction that is intrinsically less difficult, but is hampered by premature binding of the aromatic substrate to the active site before the catalytic cycle is completed.

    Read this article

    To access this article, please review the available access options below.

    Get instant access

    Purchase Access

    Read this article for 48 hours. Check out below using your ACS ID or as a guest.

    Recommended

    Access through Your Institution

    You may have access to this article through your institution.

    Your institution does not have access to this content. You can change your affiliated institution below.

     This work was supported by NSF Grant MCB-0077569.

    *

     To whom correspondence should be addressed. Phone:  (303) 492-6328. Fax:  (303) 492-1149. E-mail:  [email protected].

    Supporting Information Available

    ARTICLE SECTIONS
    Jump To

    Description of the determination of the KD for GS-Me and TCHQ dehalogenase in the presence of saturating TriCHQ. This material is available free of charge via the Internet at http://pubs.asc.org.

    Terms & Conditions

    Most electronic Supporting Information files are available without a subscription to ACS Web Editions. Such files may be downloaded by article for research use (if there is a public use license linked to the relevant article, that license may permit other uses). Permission may be obtained from ACS for other uses through requests via the RightsLink permission system: http://pubs.acs.org/page/copyright/permissions.html.

    Cited By

    This article is cited by 31 publications.

    1. Srinidhi Lokesh, Myron L. Lard, Robert L. Cook, Yu Yang. Critical Role of Semiquinones in Reductive Dehalogenation. Environmental Science & Technology 2023, 57 (38) , 14218-14225. https://doi.org/10.1021/acs.est.3c03981
    2. Anton Kozyryev, Daniel Lemen, Jessica Dunn, Steven E. Rokita. Substrate Electronics Dominate the Rate of Reductive Dehalogenation Promoted by the Flavin-Dependent Iodotyrosine Deiodinase. Biochemistry 2023, 62 (7) , 1298-1306. https://doi.org/10.1021/acs.biochem.3c00041
    3. Jonathan M. Musila, Steven E. Rokita. Sequence Conservation Does Not Always Signify a Functional Imperative as Observed in the Nitroreductase Superfamily. Biochemistry 2022, 61 (8) , 703-711. https://doi.org/10.1021/acs.biochem.2c00037
    4. Bart Raes, Benjamin Horemans, Daniel Rentsch, Jeroen T’Syen, Maarten G. K. Ghequire, René De Mot, Ruddy Wattiez, Hans-Peter E. Kohler, Dirk Springael. Aminobacter sp. MSH1 Mineralizes the Groundwater Micropollutant 2,6-Dichlorobenzamide through a Unique Chlorobenzoate Catabolic Pathway. Environmental Science & Technology 2019, 53 (17) , 10146-10156. https://doi.org/10.1021/acs.est.9b02021
    5. Zuodong Sun, Steven E. Rokita. Toward a Halophenol Dehalogenase from Iodotyrosine Deiodinase via Computational Design. ACS Catalysis 2018, 8 (12) , 11783-11793. https://doi.org/10.1021/acscatal.8b03587
    6. Hui Zhang, Ting Yu, Jie Li, Yi-Ran Wang, Guang-Li Wang, Feng Li, Yuan Liu, Ming-Hua Xiong, Ying-Qun Ma. Two dcm Gene Clusters Essential for the Degradation of Diclofop-methyl in a Microbial Consortium of Rhodococcus sp. JT-3 and Brevundimonas sp. JT-9. Journal of Agricultural and Food Chemistry 2018, 66 (46) , 12217-12226. https://doi.org/10.1021/acs.jafc.8b05382
    7. Patrick M. McTamney and Steven E. Rokita. A Mammalian Reductive Deiodinase has Broad Power to Dehalogenate Chlorinated and Brominated Substrates. Journal of the American Chemical Society 2009, 131 (40) , 14212-14213. https://doi.org/10.1021/ja906642n
    8. Joseph R. Warner, Linda S. Behlen and Shelley D. Copley. A Trade-Off between Catalytic Power and Substrate Inhibition in TCHQ Dehalogenase. Biochemistry 2008, 47 (10) , 3258-3265. https://doi.org/10.1021/bi702431n
    9. Anton Kozyryev, Petrina A. Boucher, Carla M. Quiñones-Jurgensen, Steven E. Rokita. The 2′-hydroxy group of flavin mononucleotide influences the catalytic function and promiscuity of the flavoprotein iodotyrosine dehalogenase. RSC Chemical Biology 2023, 4 (9) , 698-705. https://doi.org/10.1039/D3CB00094J
    10. Zuodong Sun, Bing Xu, Shaun Spisak, Jennifer M. Kavran, Steven E. Rokita. The minimal structure for iodotyrosine deiodinase function is defined by an outlier protein from the thermophilic bacterium Thermotoga neapolitana. Journal of Biological Chemistry 2021, 297 (6) , 101385. https://doi.org/10.1016/j.jbc.2021.101385
    11. Yamini Mathur, Sheryl Sreyas, Prathamesh M. Datar, Manjima B. Sathian, Amrita B. Hazra. CobT and BzaC catalyze the regiospecific activation and methylation of the 5-hydroxybenzimidazole lower ligand in anaerobic cobamide biosynthesis. Journal of Biological Chemistry 2020, 295 (31) , 10522-10534. https://doi.org/10.1074/jbc.RA120.014197
    12. Steven E. Rokita. Reductive Dehalogenases. 2020, 157-186. https://doi.org/10.1016/B978-0-12-409547-2.14689-X
    13. Panu Pimviriyakul, Pimchai Chaiyen. Flavin-dependent dehalogenases. 2020, 365-397. https://doi.org/10.1016/bs.enz.2020.05.010
    14. Panu Pimviriyakul, Thanyaporn Wongnate, Ruchanok Tinikul, Pimchai Chaiyen. Microbial degradation of halogenated aromatics: molecular mechanisms and enzymatic reactions. Microbial Biotechnology 2020, 13 (1) , 67-86. https://doi.org/10.1111/1751-7915.13488
    15. Olga M. Sokolovskaya, Kenny C. Mok, Jong Duk Park, Jennifer L. A. Tran, Kathryn A. Quanstrom, Michiko E. Taga, . Cofactor Selectivity in Methylmalonyl Coenzyme A Mutase, a Model Cobamide-Dependent Enzyme. mBio 2019, 10 (5) https://doi.org/10.1128/mBio.01303-19
    16. Jimin Hu, Qi Su, Jamie L. Schlessman, Steven E. Rokita. Redox control of iodotyrosine deiodinase. Protein Science 2019, 28 (1) , 68-78. https://doi.org/10.1002/pro.3479
    17. Na Li, Ren-Lei Tong, Li Yao, Qing Chen, Xin Yan, De-Rong Ding, Ji-Guo Qiu, Jian He, Jian-Dong Jiang, . Roles of Two Glutathione-Dependent 3,6-Dichlorogentisate Dehalogenases in Rhizorhabdus dicambivorans Ndbn-20 in the Catabolism of the Herbicide Dicamba. Applied and Environmental Microbiology 2018, 84 (17) https://doi.org/10.1128/AEM.00623-18
    18. Lara Sellés Vidal, Ciarán L. Kelly, Paweł M. Mordaka, John T. Heap. Review of NAD(P)H-dependent oxidoreductases: Properties, engineering and application. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2018, 1866 (2) , 327-347. https://doi.org/10.1016/j.bbapap.2017.11.005
    19. Panu Pimviriyakul, Panida Surawatanawong, Pimchai Chaiyen. Oxidative dehalogenation and denitration by a flavin-dependent monooxygenase is controlled by substrate deprotonation. Chemical Science 2018, 9 (38) , 7468-7482. https://doi.org/10.1039/C8SC01482E
    20. Zuodong Sun, Qi Su, Steven E. Rokita. The distribution and mechanism of iodotyrosine deiodinase defied expectations. Archives of Biochemistry and Biophysics 2017, 632 , 77-87. https://doi.org/10.1016/j.abb.2017.07.019
    21. Panu Pimviriyakul, Kittisak Thotsaporn, Jeerus Sucharitakul, Pimchai Chaiyen. Kinetic Mechanism of the Dechlorinating Flavin-dependent Monooxygenase HadA. Journal of Biological Chemistry 2017, 292 (12) , 4818-4832. https://doi.org/10.1074/jbc.M116.774448
    22. Abhishek Phatarphekar, Steven E. Rokita. Functional analysis of iodotyrosine deiodinase from drosophila melanogaster. Protein Science 2016, 25 (12) , 2187-2195. https://doi.org/10.1002/pro.3044
    23. Jimin Hu, Watchalee Chuenchor, Steven E. Rokita. A Switch between One- and Two-electron Chemistry of the Human Flavoprotein Iodotyrosine Deiodinase Is Controlled by Substrate. Journal of Biological Chemistry 2015, 290 (1) , 590-600. https://doi.org/10.1074/jbc.M114.605964
    24. Pankaj Kumar Arora, Hanhong Bae. Role of Dehalogenases in Aerobic Bacterial Degradation of Chlorinated Aromatic Compounds. Journal of Chemistry 2014, 2014 , 1-10. https://doi.org/10.1155/2014/157974
    25. Ta‐Yi Yu, Kenny C. Mok, Kristopher J. Kennedy, Julien Valton, Karen S. Anderson, Graham C. Walker, Michiko E. Taga. Active site residues critical for flavin binding and 5,6‐dimethylbenzimidazole biosynthesis in the flavin destructase enzyme BluB. Protein Science 2012, 21 (6) , 839-849. https://doi.org/10.1002/pro.2068
    26. Jennifer M. Buss, Patrick M. McTamney, Steven E. Rokita. Expression of a soluble form of iodotyrosine deiodinase for active site characterization by engineering the native membrane protein from Mus musculus. Protein Science 2012, 21 (3) , 351-361. https://doi.org/10.1002/pro.2020
    27. Shelley D. Copley, Joseph Rokicki, Pernilla Turner, Hajnalka Daligault, Matt Nolan, Miriam Land. The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway. Genome Biology and Evolution 2012, 4 (2) , 184-198. https://doi.org/10.1093/gbe/evr137
    28. Francisco Velazquez, Sew Yu Peak-Chew, Israel S. Fernández, Christopher S. Neumann, Robert R. Kay. Identification of a Eukaryotic Reductive Dechlorinase and Characterization of Its Mechanism of Action on Its Natural Substrate. Chemistry & Biology 2011, 18 (10) , 1252-1260. https://doi.org/10.1016/j.chembiol.2011.08.003
    29. Gerrit J. Poelarends, Christian P. Whitman. Mechanistic and Structural Studies of Microbial Dehalogenases: How Nature Cleaves a Carbon–Halogen Bond. 2010, 89-123. https://doi.org/10.1016/B978-008045382-8.00163-5
    30. Irene Axarli, Prathusha Dhavala, Anastassios C. Papageorgiou, Nikolaos E. Labrou. Crystal structure of Glycine max glutathione transferase in complex with glutathione: investigation of the mechanism operating by the Tau class glutathione transferases. Biochemical Journal 2009, 422 (2) , 247-256. https://doi.org/10.1042/BJ20090224
    31. Nerino Allocati, Luca Federici, Michele Masulli, Carmine Di Ilio. Glutathione transferases in bacteria. The FEBS Journal 2009, 276 (1) , 58-75. https://doi.org/10.1111/j.1742-4658.2008.06743.x

    Pair your accounts.

    Export articles to Mendeley

    Get article recommendations from ACS based on references in your Mendeley library.

    Pair your accounts.

    Export articles to Mendeley

    Get article recommendations from ACS based on references in your Mendeley library.

    You’ve supercharged your research process with ACS and Mendeley!

    STEP 1:
    Click to create an ACS ID

    Please note: If you switch to a different device, you may be asked to login again with only your ACS ID.

    Please note: If you switch to a different device, you may be asked to login again with only your ACS ID.

    Please note: If you switch to a different device, you may be asked to login again with only your ACS ID.

    MENDELEY PAIRING EXPIRED
    Your Mendeley pairing has expired. Please reconnect