Introduction
The formation of oxidized guanine nucleotides is a major cause of spontaneous mutations, and may contribute to carcinogenesis and ageing in mammals (
Kasai et al., 1986;
Ames & Gold, 1991;
Shibutani et al., 1991;
Sekiguchi & Tsuzuki, 2002). Studies on
Escherichia coli mutator mutants have shown that cells have elaborate mechanisms to prevent mutations caused by the oxidation of the guanine base, both in DNA and in the free‐nucleotide form. In DNA, 8‐oxoguanine residues are removed by the enzyme encoded by the
mutM gene, whereas the
mutY gene product removes adenine from an adenine:8‐oxoguanine mismatch (
Au et al., 1988;
Michaels et al., 1992). Thus, two proteins, MutM and MutY, act consecutively at sites of oxidized guanine residues in DNA to prevent the occurrence of mutations (
Tchou et al., 1993). Alternatively, mutations due to the misincorporation of 8‐oxo‐dGTP can be prevented by the
mutT gene product, which hydrolyses 8‐oxo‐dGTP (
Maki & Sekiguchi, 1992). Mutations in
mutT specifically cause A:T to C:G transversions (
Yanofsky et al., 1966), and this mutational specificity occurs through the combined actions of the MutM and MutY proteins (
Tajiri et al., 1995).
8‐Oxoguanine‐related mutagenesis may account for many spontaneous mutations in mammalian cells. Enzyme activities similar to those of the
E. coli proteins mentioned above have been identified in mammalian cells (
Yeh et al., 1991;
Bessho et al., 1993) and, among them, the MutT‐related protein has been studied the most extensively (
Sekiguchi & Tsuzuki, 2002). On the basis of the partial amino‐acid sequence determined from a purified 18‐kDa protein that has 8‐oxo‐dGTPase activity, complementary DNA and the gene for the human enzyme were isolated, and the gene was called
MTH1 (
Sakumi et al., 1993;
Furuichi et al., 1994). As the expression of human
MTH1 cDNA in
E. coli mutT− cells significantly suppressed the frequency of spontaneous mutations in these cells, the MTH1 protein may have the same antimutagenic ability as MutT. However, the levels of the increase in the frequency of spontaneous mutations due to the loss of MutT‐related functions vary considerably between
E. coli and mammalian cells. The frequency of spontaneous mutations detected in mouse
Mth1−/− cells is approximately twice that detected in
Mth1+/+ cells (
Tsuzuki et al., 2001), whereas the mutation frequency in
E. coli mutT− cells is 1,000 times greater than that of wild‐type cells (
Yanofsky et al., 1966;
Akiyama et al., 1989;
Tajiri et al., 1995). This difference may be due to the ability of the two types of enzyme to cleave 8‐oxo‐dGTP. The
Km values of MutT and MTH1 for 8‐oxo‐dGTP cleavage are 0.48 and 12.5, respectively (
Maki & Sekiguchi, 1992;
Mo et al., 1992). Considering these facts, mammalian cells must have another mechanism that is able to efficiently eliminate 8‐oxoguanine‐containing nucleotides from the precursor pool.
8‐Oxo‐dGMP, which is formed by the action of MTH1, cannot be used for DNA synthesis, as the cellular guanylate kinase enzyme is completely inactive for 8‐oxoguanine‐containing nucleotides (
Hayakawa et al., 1995). However, 8‐oxo‐dGDP, which is produced by the direct oxidation of dGDP, and also by the enzymatic cleavage of 8‐oxo‐dGTP, is readily phosphorylated by nucleoside diphosphate kinase to generate 8‐oxo‐dGTP. Considering these facts, it seems important for mammalian cells to be able to degrade 8‐oxo‐dGDP to the monophosphate. We report here that human NUDT5, which was originally known as ADP‐sugar pyrophosphatase (
Gasmi et al., 1999;
Yang et al., 2000), prevents mutations caused by the oxidation of guanine nucleotides by specifically degrading 8‐oxo‐dGDP to 8‐oxo‐dGMP.
Results and Discussion
To identify an enzyme that degrades 8‐oxo‐dGDP to the monophosphate, we made use of the GenBank human EST (expressed sequence tag) database (
http://www.ncbi.nlm.nih.gov/blast/Blast.cgi). On the basis of the 23‐amino‐acid sequence that is conserved in MutT‐related proteins (
Bessman et al., 1996;
Fujii et al., 1999), cDNA clones were isolated using the BLAST programme. Among several candidates, NUDT5 was found to have the highest level of similarity to MutT‐related proteins. Thirty (23.2%) and 27 (17.3%) amino‐acid residues of NUDT5 are identical to those of MutT and MTH1, respectively. Amino‐acid residues that are conserved in these three proteins were found to be located almost exclusively in the 23‐residue conserved sequence, which is essential for the hydrolysis of a phosphodiester bond in Nudix and in diphosphoinositol derivatives (
Bessman et al., 1996;
Fujii et al., 1999;
Nakabeppu, 2001). A comparison of amino‐acid sequences from
E. coli MutT and human MTH1 and NUDT5 proteins is shown in
Fig. 1A. It should be noted that in the highly conserved regions, two of the amino‐acid residues of NUDT5 (A96 and L98) differ from those of MutT and MTH1. The glycine residue (G37) of MutT, which corresponds to A96 of NUDT5, is essential for 8‐oxo‐dGTPase activity, as changes of this residue to any of the other 19 amino acids resulted in loss of enzyme activity (
Shimokawa et al., 2000). These amino‐acid residues may be required for the substrate specificities of the enzymes.
NUDT5 was expressed as a His‐tagged protein in
E. coli M15 cells and was purified (
Fig. 1B). Assays for enzyme activities were carried out using 5 µM 8‐oxo‐dGDP or 8‐oxo‐dGTP, and the products were analysed by high‐performance liquid chromatography (HPLC). As shown in
Fig. 2, NUDT5 efficiently degrades 8‐oxo‐dGDP to its monophosphate form. Under the same conditions, hydrolysis of 8‐oxo‐dGTP was never detected. Similar results were obtained with NUDT5 from which the His tag had been removed, which was made by treatment with Factor Xa, and with an authentic NUDT5 protein, which was purified on an anti‐NUDT5 IgG affinity column (data not shown). The corresponding fraction derived from M15 cells carrying vector only (
Fig. 1B, lane 6) had no hydrolytic activity.
The kinetic parameters of the NUDT5 enzyme (
Km and
Vmax) were measured for the hydrolysis of several nucleotides (
Table 1). The
Km for the hydrolysis of 8‐oxo‐dGDP is ten times lower than that for dGDP, which is the second best substrate for the enzyme. 8‐Oxo‐dGTP is only hydrolysed by NUDT5 at very low levels under these conditions, but when a large amount of NUDT5 was used in the reaction, cleavage of 8‐oxo‐dGTP was detected, for which the apparent
Km was 63 µM. It should be noted that NUDT5 has a
Km of 0.77 µM for 8‐oxo‐dGDP, which is considerably lower than those for ADP sugars (32 µM for ADP‐ribose, and higher values for other ADP sugars), which have previously been identified as substrates (
Yang et al., 2000). The value of NUDT5 for 8‐oxo‐dGDP is almost equal to that of MutT for 8‐oxo‐dGTP (0.48 µM). On the basis of these results, we conclude that 8‐oxo‐dGDP is a specific substrate for the NUDT5 protein.
To determine the biological significance of the cleavage of 8‐oxo‐dGDP, we expressed an
NUDT5 cDNA in
mutT‐deficient
E. coli mutant cells. As the
mutT mutator specifically results in an A:T to C:G transversion (
Yanofsky et al., 1966;
Tajiri et al., 1995), we used an
E. coli tester strain (CC101T) to detect this type of mutation (
Furuichi et al., 1994). Numerous papillae were formed in cells that carried the vector plasmid without cDNA, and this formation of papillae was almost completely suppressed when we introduced a plasmid carrying the human
NUDT5 cDNA into these cells (
Fig. 3A,B). More quantitative data were obtained in a fluctuation test using a procedure described in
Capizzi & Jameson (1973) and
Fujii et al. (1999). The mutation rate in
mutT− cells is almost 1,000‐fold higher than that in wild‐type cells, and this increased mutation rate was reduced to the wild‐type level by the introduction of
NUDT5 cDNA into
mutT− cells (
Fig. 3C). These results show that human NUDT5 can function in
E. coli to clean up the nucleotide pool. As a significantly high level of nucleoside triphosphatase activity is present in
E. coli CC101T (
mutT−) cell extracts (data not shown), suppression of the
mutT mutator activity by NUDT5 can be explained by the successive reactions of nucleotide triphophatase and NUDT5 (see
Fig. 4).
We note that NUDT5 and MutT/MTH1 have opposite preferences for substrates; NUDT5 cleaves 8‐oxo‐dGDP, but not 8‐oxo‐dGTP, whereas MutT and MTH1 degrade 8‐oxo‐dGTP, but not 8‐oxo‐dGDP. As these nucleotides are interconvertible within a cell, NUDT5 can replace MutT function. These situations are illustrated in
Fig. 4. 8‐Oxo‐dGDP can be phosphorylated to 8‐oxo‐dGTP by nucleoside diphosphate kinase, and 8‐oxo‐dGTP is cleaved to 8‐oxo‐dGDP by nucleoside triphosphatase (
Mo et al., 1992). In
E. coli cells, MutT protein, which has a potent 8‐oxo‐dGTPase activity, is almost solely responsible for reducing the mutagenic nucleotide level, on the basis of the finding that
mutT− mutants show a 1,000‐fold higher frequency of spontaneous mutations, as compared with wild‐type cells. In human cells, however, two types of enzyme seem to function; MTH1 specifically hydrolyses 8‐oxo‐dGTP, and NUDT5 cleaves 8‐oxo‐dGDP. Taking into account the parameters for these enzymatic reactions, NUDT5 may have a greater role than does MTH1. It should be noted that 8‐oxo‐dGDP is a potent inhibitor of the MTH1 reaction (
Bialkowski & Kasprzak, 1998;
Fujikawa et al., 1999). Thus, NUDT5 has another role in promoting the MTH1 reaction, in removing its inhibitor, 8‐oxo‐dGDP. In this respect, it is important to know the levels of 8‐oxo‐dGDP and 8‐oxo‐dGTP in the nucleotide pools, as well as their intracellular localization.
Recent studies of Mth1‐deficient mice revealed that MTH1 is involved, to some extent, in the suppression of spontaneous tumorigenesis (
Tsuzuki et al., 2001). More definite conclusions about the biological significance of NUDT5 and MTH1 proteins in maintaining the integrity of genetic information might be obtained by producing mice deficient for NUDT5, as well as those lacking both proteins. Studies on this line are in progress.